Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 3.0e-75 285.0 138 100.0
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 1.5e-34 149.8 73 97.3
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 2.6e-18 95.9 48 87.5
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 2.9e-17 92.4 48 83.3
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 5.4e-16 88.2 48 79.2
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 5.4e-16 88.2 48 81.2
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 5.4e-16 88.2 48 81.2
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 7.0e-16 87.8 50 78.0
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 7.0e-16 87.8 48 81.2
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 9.2e-16 87.4 48 81.2
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 9.2e-16 87.4 48 81.2
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 9.2e-16 87.4 48 79.2
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 9.2e-16 87.4 50 78.0
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 1.2e-15 87.0 50 76.0
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.2e-15 87.0 48 81.2
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 1.6e-15 86.7 48 79.2
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 1.6e-15 86.7 48 79.2
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 1.6e-15 86.7 48 77.1
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 1.6e-15 86.7 48 79.2
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 2.0e-15 86.3 48 79.2
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 2.0e-15 86.3 48 77.1
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 2.0e-15 86.3 48 79.2
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 2.0e-15 86.3 48 79.2
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 2.0e-15 86.3 48 77.1
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 2.0e-15 86.3 48 79.2
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 2.0e-15 86.3 48 77.1
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 2.0e-15 86.3 47 80.9
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 2.7e-15 85.9 48 77.1
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 2.7e-15 85.9 48 77.1
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 2.7e-15 85.9 48 77.1
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 2.7e-15 85.9 48 77.1
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 2.7e-15 85.9 48 77.1
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 2.7e-15 85.9 50 76.0
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 2.7e-15 85.9 48 77.1
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 2.7e-15 85.9 48 77.1
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 2.7e-15 85.9 48 77.1
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 2.7e-15 85.9 51 74.5
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 3.5e-15 85.5 48 77.1
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 3.5e-15 85.5 48 77.1
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 3.5e-15 85.5 48 77.1
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 3.5e-15 85.5 48 77.1
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 3.5e-15 85.5 48 77.1
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 3.5e-15 85.5 48 77.1
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 3.5e-15 85.5 50 76.0
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 4.6e-15 85.1 50 70.0
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 4.6e-15 85.1 48 77.1
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 4.6e-15 85.1 48 77.1
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 4.6e-15 85.1 48 77.1
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 4.6e-15 85.1 48 77.1
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 4.6e-15 85.1 48 77.1
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 4.6e-15 85.1 48 75.0
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 4.6e-15 85.1 48 75.0
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 6.0e-15 84.7 48 75.0
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 6.0e-15 84.7 48 77.1
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 6.0e-15 84.7 48 75.0
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 6.0e-15 84.7 47 76.6
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 7.8e-15 84.3 48 79.2
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 7.8e-15 84.3 48 77.1
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 7.8e-15 84.3 48 75.0
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 1.0e-14 84.0 48 77.1
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 1.0e-14 84.0 47 78.7
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 1.0e-14 84.0 48 75.0
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 1.0e-14 84.0 48 77.1
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 1.0e-14 84.0 48 77.1
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 1.0e-14 84.0 48 77.1
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 1.3e-14 83.6 48 77.1
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 1.3e-14 83.6 48 77.1
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 1.3e-14 83.6 48 77.1
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 1.7e-14 83.2 48 75.0
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 1.7e-14 83.2 48 75.0
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 1.7e-14 83.2 48 77.1
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 1.7e-14 83.2 48 75.0
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 1.7e-14 83.2 48 75.0
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 1.7e-14 83.2 48 77.1
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 2.3e-14 82.8 48 75.0
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 3.0e-14 82.4 48 75.0
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 3.0e-14 82.4 48 75.0
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 3.0e-14 82.4 48 75.0
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 3.0e-14 82.4 48 75.0
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 3.0e-14 82.4 48 75.0
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 3.9e-14 82.0 48 75.0
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 3.9e-14 82.0 48 75.0
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 3.9e-14 82.0 48 75.0
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 3.9e-14 82.0 48 75.0
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 3.9e-14 82.0 48 75.0
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 5.0e-14 81.6 48 75.0
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 5.0e-14 81.6 48 75.0
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 5.0e-14 81.6 48 72.9
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 6.6e-14 81.3 48 75.0
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 6.6e-14 81.3 48 75.0
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 6.6e-14 81.3 48 72.9
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 8.6e-14 80.9 48 72.9
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 8.6e-14 80.9 62 54.8
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 8.6e-14 80.9 62 54.8
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 8.6e-14 80.9 62 54.8
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 8.6e-14 80.9 48 72.9
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 8.6e-14 80.9 48 75.0
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 1.1e-13 80.5 48 77.1
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 1.5e-13 80.1 51 66.7
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 1.5e-13 80.1 51 66.7
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 1.9e-13 79.7 48 75.0
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 2.5e-13 79.3 51 66.7
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 4.3e-13 78.6 47 76.6
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 1.2e-12 77.0 48 70.8
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 2.8e-12 75.9 48 72.9
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 8.1e-12 74.3 47 68.1
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 1.8e-11 73.2 50 66.0
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 5.2e-11 71.6 48 66.7
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 2.2e-09 66.2 48 66.7
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 3.7e-09 65.5 47 61.7
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 1.1e-08 63.9 45 62.2
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 8.6e-06 54.3 31 74.2


User provided reference genes

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