Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0269461 Helianthus annuus HOM05D001990 ORTHO05D225438 9.7e-65 250.0 125 100.0
Nitab4.5_0006417g0010 Nicotiana tabacum HOM05D001990 ORTHO05D002033 2.3e-10 69.3 38 94.7
ECA234G4222 Erigeron canadensis HOM05D001990 ORTHO05D002033 4.0e-10 68.6 38 94.7
Nitab4.5_0000035g0200 Nicotiana tabacum HOM05D001990 ORTHO05D002033 4.0e-10 68.6 38 94.7
Solyc12g014290.2 Solanum lycopersicum HOM05D001990 ORTHO05D002033 4.0e-10 68.6 38 94.7
Sopen12g006080 Solanum pennellii HOM05D001990 ORTHO05D002033 4.0e-10 68.6 38 94.7
PGSC0003DMG400015336 Solanum tuberosum HOM05D001990 ORTHO05D002033 4.0e-10 68.6 38 94.7
Lsat_1_v5_gn_5_126601 Lactuca sativa HOM05D001990 ORTHO05D002033 8.9e-10 67.4 38 92.1
Lj1A829T33 Lonicera japonica HOM05D001990 ORTHO05D002033 1.2e-09 67.0 38 89.5
Solyc07g062400.3 Solanum lycopersicum HOM05D001990 ORTHO05D002033 1.2e-09 67.0 38 89.5
Sopen07g030650 Solanum pennellii HOM05D001990 ORTHO05D002033 1.2e-09 67.0 38 89.5
vmacro11943 Vaccinium macrocarpon HOM05D001990 ORTHO05D002033 1.2e-09 67.0 38 89.5
HanXRQChr12g0373411 Helianthus annuus HOM05D001990 ORTHO05D002033 1.5e-09 66.6 36 97.2
Oeu050666.1 Olea europaea HOM05D001990 ORTHO05D002033 1.5e-09 66.6 36 97.2
SalBow7G1709 Salvia bowleyana HOM05D001990 ORTHO05D002033 1.5e-09 66.6 38 89.5
SGA_v2.0_scaffold34G13783 Striga asiatica HOM05D001990 ORTHO05D002033 1.5e-09 66.6 36 97.2
SGA_v2.0_scaffold70G23380 Striga asiatica HOM05D001990 ORTHO05D002033 1.5e-09 66.6 36 97.2
Migut.H01999 Erythranthe guttata HOM05D001990 ORTHO05D002033 2.0e-09 66.2 36 94.4
Hma1.2p1_1016F.1_g248085 Hydrangea macrophylla HOM05D001990 ORTHO05D002033 2.6e-09 65.9 38 86.8
HanXRQChr10g0304901 Helianthus annuus HOM05D001990 ORTHO05D002033 3.4e-09 65.5 36 94.4
Oeu025332.1 Olea europaea HOM05D001990 ORTHO05D002033 3.4e-09 65.5 36 94.4
vmacro09213 Vaccinium macrocarpon HOM05D001990 ORTHO05D002033 3.4e-09 65.5 36 94.4
Actinidia09806 Actinidia chinensis HOM05D001990 ORTHO05D002033 4.4e-09 65.1 36 91.7
Actinidia12580 Actinidia chinensis HOM05D001990 ORTHO05D002033 4.4e-09 65.1 36 91.7
CSS0010899 Camellia sinensis var. sinensis HOM05D001990 ORTHO05D002033 4.4e-09 65.1 36 91.7
Dinv14995 Davidia involucrata HOM05D001990 ORTHO05D002033 4.4e-09 65.1 36 91.7
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 4.4e-09 65.1 36 91.7
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 4.4e-09 65.1 36 91.7
PSO229G0135 Papaver somniferum HOM05D001990 ORTHO05D002033 4.4e-09 65.1 38 86.8
PSO675G8063 Papaver somniferum HOM05D001990 ORTHO05D002033 4.4e-09 65.1 38 86.8
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 4.4e-09 65.1 36 91.7
Peaxi162Scf00692g00415 Petunia axillaris HOM05D001990 ORTHO05D002033 4.4e-09 65.1 36 91.7
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 4.4e-09 65.1 36 91.7
Sc03g0010520 Simmondsia chinensis HOM05D001990 ORTHO05D002033 4.4e-09 65.1 36 91.7
MSTRG.6679 Avicennia marina HOM05D001990 ORTHO05D002033 7.5e-09 64.3 36 91.7
CAN.G375.17 Capsicum annuum HOM05D001990 ORTHO05D002033 7.5e-09 64.3 36 91.7
CiPaw.04G133600 Carya illinoinensis HOM05D001990 ORTHO05D002033 7.5e-09 64.3 38 86.8
Migut.M00724 Erythranthe guttata HOM05D001990 ORTHO05D002033 7.5e-09 64.3 36 91.7
FAN02G4409 Fragaria x ananassa HOM05D001990 ORTHO05D002033 7.5e-09 64.3 38 86.8
FAN09G0849 Fragaria x ananassa HOM05D001990 ORTHO05D002033 7.5e-09 64.3 38 86.8
Nitab4.5_0000383g0170 Nicotiana tabacum HOM05D001990 ORTHO05D002033 7.5e-09 64.3 36 91.7
Oeu059261.2 Olea europaea HOM05D001990 ORTHO05D002033 7.5e-09 64.3 36 91.7
Potri.011G109500 Populus trichocarpa HOM05D001990 ORTHO05D002033 7.5e-09 64.3 38 86.8
RcHm_v2.0_Chr2g0130001 Rosa chinensis HOM05D001990 ORTHO05D002033 7.5e-09 64.3 38 86.8
TAR626G1110 Trochodendron aralioides HOM05D001990 ORTHO05D002033 7.5e-09 64.3 38 86.8
CSS0029513 Camellia sinensis var. sinensis HOM05D001990 ORTHO05D002033 9.9e-09 63.9 36 88.9
CiPaw.03G194700 Carya illinoinensis HOM05D001990 ORTHO05D002033 9.9e-09 63.9 38 84.2
Cc05_g11050 Coffea canephora HOM05D001990 ORTHO05D002033 9.9e-09 63.9 38 81.6
FAN05G2735 Fragaria x ananassa HOM05D001990 ORTHO05D002033 9.9e-09 63.9 38 84.2
Prupe.3G116500 Prunus persica HOM05D001990 ORTHO05D002033 9.9e-09 63.9 38 84.2
Hund10523 Selenicereus undatus HOM05D001990 ORTHO05D002033 9.9e-09 63.9 36 91.7
Ah.06g185390 Amaranthus hybridus HOM05D001990 ORTHO05D002033 1.3e-08 63.5 36 91.7
EL10Ac4g08349 Beta vulgaris HOM05D001990 ORTHO05D002033 1.3e-08 63.5 36 91.7
Eucgr.F01243 Eucalyptus grandis HOM05D001990 ORTHO05D002033 1.3e-08 63.5 36 91.7
Lj3g0003957 Lotus japonicus HOM05D001990 ORTHO05D002033 1.3e-08 63.5 36 88.9
arahy.Tifrunner.gnm1.ann1.1CR6HA Arachis hypogaea HOM05D001990 ORTHO05D002033 1.7e-08 63.2 36 88.9
arahy.Tifrunner.gnm1.ann1.B1IT4T Arachis hypogaea HOM05D001990 ORTHO05D002033 1.7e-08 63.2 36 88.9
FvH4_6g27570 Fragaria vesca HOM05D001990 ORTHO05D002033 1.7e-08 63.2 38 84.2
FAN14G1803 Fragaria x ananassa HOM05D001990 ORTHO05D002033 1.7e-08 63.2 38 84.2
Hma1.2p1_0290F.1_g114880 Hydrangea macrophylla HOM05D001990 ORTHO05D002033 1.7e-08 63.2 38 81.6
Lalb_Chr20g0109251 Lupinus albus HOM05D001990 ORTHO05D002033 1.7e-08 63.2 38 84.2
Sed0020959 Sechium edule HOM05D001990 ORTHO05D002033 1.7e-08 63.2 38 81.6
Solyc09g055470.1 Solanum lycopersicum HOM05D001990 ORTHO05D002033 1.7e-08 63.2 36 88.9
Solyc10g007350.4 Solanum lycopersicum HOM05D001990 ORTHO05D002033 1.7e-08 63.2 36 88.9
Sopen10g003180 Solanum pennellii HOM05D001990 ORTHO05D002033 1.7e-08 63.2 36 88.9
MSTRG.14234 Avicennia marina HOM05D001990 ORTHO05D002033 2.2e-08 62.8 36 86.1
CANSAT64G0401 Cannabis sativa HOM05D001990 ORTHO05D002033 2.2e-08 62.8 38 81.6
Cpa.g.sc77.11 Carica papaya HOM05D001990 ORTHO05D002033 2.2e-08 62.8 36 88.9
Cfa023602 Carpinus fangiana HOM05D001990 ORTHO05D002033 2.2e-08 62.8 38 81.6
Haze_13403 Corylus avellana HOM05D001990 ORTHO05D002033 2.2e-08 62.8 38 81.6
Os08g0366100 Oryza sativa ssp. japonica HOM05D001990 ORTHO05D002033 2.2e-08 62.8 40 77.5
Potri.001G390400 Populus trichocarpa HOM05D001990 ORTHO05D002033 2.2e-08 62.8 38 81.6
SalBow1G6403 Salvia bowleyana HOM05D001990 ORTHO05D002033 2.2e-08 62.8 36 88.9
SalBow8G4101 Salvia bowleyana HOM05D001990 ORTHO05D002033 2.2e-08 62.8 36 88.9
Sc16g0007640 Simmondsia chinensis HOM05D001990 ORTHO05D002033 2.2e-08 62.8 38 81.6
Thecc.01G152300 Theobroma cacao HOM05D001990 ORTHO05D002033 2.2e-08 62.8 38 81.6
unitig_0.g2274 Utricularia gibba HOM05D001990 ORTHO05D002033 2.2e-08 62.8 36 86.1
unitig_52.g17394 Utricularia gibba HOM05D001990 ORTHO05D002033 2.2e-08 62.8 36 86.1
Zm00001eb042750 Zea mays HOM05D001990 ORTHO05D002033 2.2e-08 62.8 40 77.5
Zm00001eb170690 Zea mays HOM05D001990 ORTHO05D002033 2.2e-08 62.8 40 77.5
Ah.04g164240 Amaranthus hybridus HOM05D001990 ORTHO05D002033 2.9e-08 62.4 36 88.9
arahy.Tifrunner.gnm1.ann1.CJ2NL1 Arachis hypogaea HOM05D001990 ORTHO05D002033 2.9e-08 62.4 36 88.9
arahy.Tifrunner.gnm1.ann1.S3Y1TX Arachis hypogaea HOM05D001990 ORTHO05D002033 2.9e-08 62.4 36 88.9
MSTRG.12864 Avicennia marina HOM05D001990 ORTHO05D002033 2.9e-08 62.4 36 86.1
Nn1g04469 Nelumbo nucifera HOM05D001990 ORTHO05D002033 2.9e-08 62.4 36 88.9
TWI59G1239 Tripterygium wilfordii HOM05D001990 ORTHO05D002033 2.9e-08 62.4 38 81.6
ClCG02G017890 Citrullus lanatus HOM05D001990 ORTHO05D002033 3.7e-08 62.0 36 86.1
COL.COLO4_33596 Corchorus olitorius HOM05D001990 ORTHO05D002033 3.7e-08 62.0 38 81.6
CsaV3_6G015300 Cucumis sativus L. HOM05D001990 ORTHO05D002033 3.7e-08 62.0 36 86.1
Lj1C679G9 Lonicera japonica HOM05D001990 ORTHO05D002033 3.7e-08 62.0 36 86.1
MD17G1265800 Malus domestica HOM05D001990 ORTHO05D002033 3.7e-08 62.0 38 81.6
MD17G1265900 Malus domestica HOM05D001990 ORTHO05D002033 3.7e-08 62.0 38 81.6
QL08p042027 Quercus lobata HOM05D001990 ORTHO05D002033 3.7e-08 62.0 38 81.6
SGA_v2.0_scaffold130G34292 Striga asiatica HOM05D001990 ORTHO05D002033 3.7e-08 62.0 36 88.9
Glyma.06G276200 Glycine max HOM05D001990 ORTHO05D002033 6.4e-08 61.2 36 83.3
Glyma.06G276300 Glycine max HOM05D001990 ORTHO05D002033 6.4e-08 61.2 36 83.3
Glyma.12G129100 Glycine max HOM05D001990 ORTHO05D002033 6.4e-08 61.2 36 83.3
Gohir.A08G234400 Gossypium hirsutum HOM05D001990 ORTHO05D002033 6.4e-08 61.2 36 86.1
Gohir.D08G254800 Gossypium hirsutum HOM05D001990 ORTHO05D002033 6.4e-08 61.2 36 86.1
Gorai.004G271900 Gossypium raimondii HOM05D001990 ORTHO05D002033 6.4e-08 61.2 36 86.1
Lj3g0016055 Lotus japonicus HOM05D001990 ORTHO05D002033 6.4e-08 61.2 36 83.3
Medtr2g084220 Medicago truncatula HOM05D001990 ORTHO05D002033 6.4e-08 61.2 36 83.3
Nn1g09166 Nelumbo nucifera HOM05D001990 ORTHO05D002033 6.4e-08 61.2 36 86.1
Sed0024304 Sechium edule HOM05D001990 ORTHO05D002033 6.4e-08 61.2 38 78.9
TPR.G21032 Trifolium pratense HOM05D001990 ORTHO05D002033 6.4e-08 61.2 36 83.3
AUR62019579 Chenopodium quinoa HOM05D001990 ORTHO05D002033 8.3e-08 60.8 36 86.1
Gohir.A04G042300 Gossypium hirsutum HOM05D001990 ORTHO05D002033 8.3e-08 60.8 36 83.3
Gohir.D05G340900 Gossypium hirsutum HOM05D001990 ORTHO05D002033 8.3e-08 60.8 36 83.3
Gorai.009G367300 Gossypium raimondii HOM05D001990 ORTHO05D002033 8.3e-08 60.8 36 83.3
MBI07_g09562_MAGBIO Magnolia biondii HOM05D001990 ORTHO05D002033 8.3e-08 60.8 36 83.3
Aqoxy1G02036 Aquilegia oxysepala HOM05D001990 ORTHO05D002033 1.1e-07 60.5 38 78.9
TAR627G0549 Trochodendron aralioides HOM05D001990 ORTHO05D002033 1.1e-07 60.5 36 83.3
Atru.chr2.2108 Acer truncatum HOM05D001990 ORTHO05D002033 1.4e-07 60.1 36 83.3
Ca_18868_v3 Cicer arietinum L. HOM05D001990 ORTHO05D002033 1.4e-07 60.1 36 83.3
ClCG07G002730 Citrullus lanatus HOM05D001990 ORTHO05D002033 1.4e-07 60.1 36 83.3
Lalb_Chr25g0285871 Lupinus albus HOM05D001990 ORTHO05D002033 1.4e-07 60.1 38 81.6
Medtr4g080090 Medicago truncatula HOM05D001990 ORTHO05D002033 1.4e-07 60.1 36 83.3
Psat7g163600 Pisum sativum HOM05D001990 ORTHO05D002033 1.4e-07 60.1 36 83.3
PGR142G1052 Punica granatum HOM05D001990 ORTHO05D002033 1.4e-07 60.1 36 83.3
VMungo1127G1014 Vigna mungo HOM05D001990 ORTHO05D002033 1.4e-07 60.1 36 83.3
ATR0012G036 Amborella trichopoda HOM05D001990 ORTHO05D002033 1.9e-07 59.7 38 73.7
Ciclev10022757m.g Citrus clementina HOM05D001990 ORTHO05D002033 1.9e-07 59.7 36 83.3
Phvul.005G094400 Phaseolus vulgaris HOM05D001990 ORTHO05D002033 1.9e-07 59.7 36 77.8
THA.LOC104802263 Tarenaya hassleriana HOM05D001990 ORTHO05D002033 1.9e-07 59.7 36 83.3
Duzib187G0040 Durio zibethinus HOM05D001990 ORTHO05D002033 2.4e-07 59.3 36 80.6
Duzib268G0236 Durio zibethinus HOM05D001990 ORTHO05D002033 2.4e-07 59.3 36 80.6
Thecc.07G117300 Theobroma cacao HOM05D001990 ORTHO05D002033 2.4e-07 59.3 36 80.6
TWI23G0558 Tripterygium wilfordii HOM05D001990 ORTHO05D002033 2.4e-07 59.3 36 80.6
VMungo1080G0411 Vigna mungo HOM05D001990 ORTHO05D002033 2.4e-07 59.3 36 77.8
Ca_01862_v3 Cicer arietinum L. HOM05D001990 ORTHO05D002033 3.2e-07 58.9 36 77.8
Dinv07702 Davidia involucrata HOM05D001990 ORTHO05D002033 3.2e-07 58.9 36 83.3
Mapoly0153s0035 Marchantia polymorpha HOM05D001990 ORTHO05D002033 3.2e-07 58.9 36 80.6
Phvul.011G128800 Phaseolus vulgaris HOM05D001990 ORTHO05D002033 3.2e-07 58.9 36 80.6
Psat5g249920 Pisum sativum HOM05D001990 ORTHO05D002033 3.2e-07 58.9 36 77.8
COL.COLO4_17540 Corchorus olitorius HOM05D001990 ORTHO05D002033 4.1e-07 58.5 36 80.6
Dinv01704 Davidia involucrata HOM05D001990 ORTHO05D002033 4.1e-07 58.5 36 80.6
Lj8A100T108 Lonicera japonica HOM05D001990 ORTHO05D002033 4.1e-07 58.5 37 78.4
Sed0015197 Sechium edule HOM05D001990 ORTHO05D002033 4.1e-07 58.5 36 77.8
THA.LOC104802969 Tarenaya hassleriana HOM05D001990 ORTHO05D002033 4.1e-07 58.5 36 80.6
Pp3c8_3310 Physcomitrium patens HOM05D001990 ORTHO05D002033 5.4e-07 58.2 40 70.0
SEGI_04096 Sequoiadendron giganteum HOM05D001990 ORTHO05D002033 5.4e-07 58.2 36 80.6
AL4G41230 Arabidopsis lyrata HOM05D001990 ORTHO05D002033 9.2e-07 57.4 36 77.8
AL5G40440 Arabidopsis lyrata HOM05D001990 ORTHO05D002033 9.2e-07 57.4 36 77.8
AT3G58680 Arabidopsis thaliana HOM05D001990 ORTHO05D002033 9.2e-07 57.4 36 77.8
A05p03360 Brassica napus HOM05D001990 ORTHO05D002033 9.2e-07 57.4 36 77.8
C04p03940 Brassica napus HOM05D001990 ORTHO05D002033 9.2e-07 57.4 36 77.8
BolC4t22030H Brassica oleracea HOM05D001990 ORTHO05D002033 9.2e-07 57.4 36 77.8
BraA05t19325Z Brassica rapa HOM05D001990 ORTHO05D002033 9.2e-07 57.4 36 77.8
Carub.0005s2547 Capsella rubella HOM05D001990 ORTHO05D002033 9.2e-07 57.4 36 77.8
CARHR289480 Cardamine hirsuta HOM05D001990 ORTHO05D002033 9.2e-07 57.4 36 77.8
Thhalv10006302m.g Eutrema salsugineum HOM05D001990 ORTHO05D002033 9.2e-07 57.4 36 77.8
Thhalv10017391m.g Eutrema salsugineum HOM05D001990 ORTHO05D002033 9.2e-07 57.4 36 77.8
Pp3c3_36750 Physcomitrium patens HOM05D001990 ORTHO05D002033 9.2e-07 57.4 40 70.0
Sp4g24820 Schrenkiella parvula HOM05D001990 ORTHO05D002033 9.2e-07 57.4 36 77.8
Sp5g04170 Schrenkiella parvula HOM05D001990 ORTHO05D002033 9.2e-07 57.4 36 77.8
Lj8P538T7 Lonicera japonica HOM05D001990 ORTHO05D002033 1.2e-06 57.0 38 81.6
Manes.03G100900 Manihot esculenta HOM05D001990 ORTHO05D002033 1.2e-06 57.0 36 75.0
BcaC07g37926 Brassica carinata HOM05D001990 ORTHO05D002033 1.6e-06 56.6 36 77.8
A04p02420 Brassica napus HOM05D001990 ORTHO05D002033 1.6e-06 56.6 36 77.8
C02p27120 Brassica napus HOM05D001990 ORTHO05D002033 1.6e-06 56.6 36 77.8
BraA04t15972Z Brassica rapa HOM05D001990 ORTHO05D002033 1.6e-06 56.6 36 77.8
CBR_g44532 Chara braunii HOM05D001990 ORTHO05D002033 1.6e-06 56.6 40 67.5
Aa31LG1G24460 Aethionema arabicum HOM05D001990 ORTHO05D002033 2.1e-06 56.2 36 75.0
Carub.0004s2512 Capsella rubella HOM05D001990 ORTHO05D002033 2.1e-06 56.2 36 75.0
MBI14_g43308_MAGBIO Magnolia biondii HOM05D001990 ORTHO05D002033 2.1e-06 56.2 36 75.0
Manes.15G095200 Manihot esculenta HOM05D001990 ORTHO05D002033 2.1e-06 56.2 36 75.0
Aa31LG10G13270 Aethionema arabicum HOM05D001990 ORTHO05D002033 2.7e-06 55.8 36 75.0
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 2.7e-06 55.8 36 75.0
BcaB02g07509 Brassica carinata HOM05D001990 ORTHO05D002033 2.7e-06 55.8 36 75.0
BcaC07g40216 Brassica carinata HOM05D001990 ORTHO05D002033 2.7e-06 55.8 36 75.0
BcaC08g44936 Brassica carinata HOM05D001990 ORTHO05D002033 2.7e-06 55.8 36 75.0
Gohir.A01G054100 Gossypium hirsutum HOM05D001990 ORTHO05D002033 2.7e-06 55.8 36 77.8
Gohir.D01G042718 Gossypium hirsutum HOM05D001990 ORTHO05D002033 2.7e-06 55.8 36 77.8
Gorai.002G054400 Gossypium raimondii HOM05D001990 ORTHO05D002033 2.7e-06 55.8 36 77.8
BcaB02g08241 Brassica carinata HOM05D001990 ORTHO05D002033 3.5e-06 55.5 36 75.0
GSVIVG01020722001 Vitis vinifera HOM05D001990 ORTHO05D002033 3.5e-06 55.5 36 80.6
C04p33820 Brassica napus HOM05D001990 ORTHO05D002033 4.6e-06 55.1 36 75.0
GSVIVG01014192001 Vitis vinifera HOM05D001990 ORTHO05D002033 4.6e-06 55.1 38 76.3
A03p23790 Brassica napus HOM05D001990 ORTHO05D002033 6.0e-06 54.7 36 72.2
C03p28380 Brassica napus HOM05D001990 ORTHO05D002033 6.0e-06 54.7 36 72.2
BolC3t15208H Brassica oleracea HOM05D001990 ORTHO05D002033 6.0e-06 54.7 36 72.2
BolC8t51000H Brassica oleracea HOM05D001990 ORTHO05D002033 6.0e-06 54.7 36 72.2
BraA03t11593Z Brassica rapa HOM05D001990 ORTHO05D002033 6.0e-06 54.7 36 72.2
Hma1.2p1_0280F.1_g112810 Hydrangea macrophylla HOM05D001990 ORTHO05D002033 7.8e-06 54.3 36 77.8


User provided reference genes

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