Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0268301 Helianthus annuus HOM05D004707 ORTHO05D005837 9.7e-144 513.5 257 100.0
HanXRQChr11g0349701 Helianthus annuus HOM05D004707 ORTHO05D005837 3.4e-141 505.0 268 95.9
HanXRQChr17g0534491 Helianthus annuus HOM05D004707 ORTHO05D005837 8.3e-103 377.5 209 90.9
HanXRQChr05g0161201 Helianthus annuus HOM05D015005 ORTHO05D000110 1.1e-43 181.0 123 77.2
HanXRQChr14g0443171 Helianthus annuus HOM05D015005 ORTHO05D000110 1.1e-43 181.0 123 77.2
HanXRQChr16g0520681 Helianthus annuus HOM05D004707 ORTHO05D005837 1.8e-33 147.1 85 85.9
HanXRQChr14g0439531 Helianthus annuus HOM05D015005 ORTHO05D000110 4.6e-29 132.5 116 65.5
Lsat_1_v5_gn_4_43000 Lactuca sativa HOM05D004707 ORTHO05D005837 6.1e-29 132.1 88 73.9
Lj9C587T4 Lonicera japonica HOM05D004707 ORTHO05D005837 8.2e-26 121.7 88 67.0
CSS0041396 Camellia sinensis var. sinensis HOM05D004707 ORTHO05D005837 1.1e-25 121.3 88 63.6
Actinidia18541 Actinidia chinensis HOM05D004707 ORTHO05D005837 3.1e-25 119.8 88 64.8
TAR375G0400 Trochodendron aralioides HOM05D004707 ORTHO05D005837 3.1e-25 119.8 88 63.6
GSVIVG01026989001 Vitis vinifera HOM05D004707 ORTHO05D005837 4.1e-25 119.4 88 63.6
Rhsim01G0164800 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.5e-24 117.5 88 64.8
Eucgr.D02313 Eucalyptus grandis HOM05D004707 ORTHO05D005837 2.0e-24 117.1 88 60.2
Cc00_g17840 Coffea canephora HOM05D004707 ORTHO05D005837 3.4e-24 116.3 88 63.6
Prupe.2G174600 Prunus persica HOM05D004707 ORTHO05D005837 5.9e-24 115.5 88 59.1
Ciclev10028150m.g Citrus clementina HOM05D004707 ORTHO05D005837 1.3e-23 114.4 88 59.1
Dinv43847 Davidia involucrata HOM05D004707 ORTHO05D005837 1.3e-23 114.4 88 62.5
Psat4g156520 Pisum sativum HOM05D004707 ORTHO05D005837 1.7e-23 114.0 88 59.1
Lalb_Chr04g0259171 Lupinus albus HOM05D004707 ORTHO05D005837 2.9e-23 113.2 88 60.2
Solyc10g012060.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 2.9e-23 113.2 88 61.4
Sopen10g005800 Solanum pennellii HOM05D004707 ORTHO05D005837 2.9e-23 113.2 88 61.4
SGA_v2.0_scaffold95G28817 Striga asiatica HOM05D004707 ORTHO05D005837 2.9e-23 113.2 84 60.7
ECA234G0026 Erigeron canadensis HOM05D004707 ORTHO05D005837 3.8e-23 112.8 82 64.6
Medtr8g028760 Medicago truncatula HOM05D004707 ORTHO05D005837 6.5e-23 112.1 88 58.0
Thecc.01G355200 Theobroma cacao HOM05D004707 ORTHO05D005837 6.5e-23 112.1 88 58.0
Ca_23597_v3 Cicer arietinum L. HOM05D004707 ORTHO05D005837 8.5e-23 111.7 88 56.8
Lj3g0007734 Lotus japonicus HOM05D004707 ORTHO05D005837 8.5e-23 111.7 88 60.2
HanXRQChr06g0173081 Helianthus annuus HOM05D003494 ORTHO05D004033 1.1e-22 111.3 66 80.3
MD01G1068400 Malus domestica HOM05D004707 ORTHO05D005837 1.1e-22 111.3 88 56.8
Nitab4.5_0000200g0180 Nicotiana tabacum HOM05D004707 ORTHO05D005837 1.4e-22 110.9 88 59.1
Nitab4.5_0000690g0060 Nicotiana tabacum HOM05D004707 ORTHO05D005837 1.4e-22 110.9 88 59.1
Peaxi162Scf00585g00318 Petunia axillaris HOM05D004707 ORTHO05D005837 1.4e-22 110.9 88 61.4
Sc06g0007250 Simmondsia chinensis HOM05D004707 ORTHO05D005837 1.4e-22 110.9 88 60.2
vmacro20909 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 1.4e-22 110.9 88 60.2
Atru.chr5.540 Acer truncatum HOM05D004707 ORTHO05D005837 1.9e-22 110.5 88 56.8
CANSAT56G0368 Cannabis sativa HOM05D004707 ORTHO05D005837 1.9e-22 110.5 88 60.2
Cpa.g.sc11.45 Carica papaya HOM05D004707 ORTHO05D005837 1.9e-22 110.5 88 59.1
CiPaw.01G064900 Carya illinoinensis HOM05D004707 ORTHO05D005837 1.9e-22 110.5 88 55.7
THA.LOC104825856 Tarenaya hassleriana HOM05D004707 ORTHO05D005837 1.9e-22 110.5 88 58.0
Haze_15544 Corylus avellana HOM05D004707 ORTHO05D005837 3.2e-22 109.8 88 59.1
Glyma.16G033400 Glycine max HOM05D004707 ORTHO05D005837 3.2e-22 109.8 88 55.7
VMungo0331G0696 Vigna mungo HOM05D004707 ORTHO05D005837 4.2e-22 109.4 88 55.7
Oeu015224.1 Olea europaea HOM05D004707 ORTHO05D005837 5.5e-22 109.0 84 61.9
PGR031G2856 Punica granatum HOM05D004707 ORTHO05D005837 5.5e-22 109.0 88 58.0
Glyma.07G067400 Glycine max HOM05D004707 ORTHO05D005837 7.2e-22 108.6 82 58.5
Phvul.010G102400 Phaseolus vulgaris HOM05D004707 ORTHO05D005837 7.2e-22 108.6 88 54.5
BcaC03g16035 Brassica carinata HOM05D004707 ORTHO05D005837 9.4e-22 108.2 88 60.2
TPR.G14976 Trifolium pratense HOM05D004707 ORTHO05D005837 1.2e-21 107.8 88 55.7
CAN.G91.14 Capsicum annuum HOM05D004707 ORTHO05D005837 1.6e-21 107.5 88 59.1
Potri.014G088200 Populus trichocarpa HOM05D004707 ORTHO05D005837 1.6e-21 107.5 88 60.2
TWI59G0961 Tripterygium wilfordii HOM05D004707 ORTHO05D005837 1.6e-21 107.5 88 58.0
A02p24040 Brassica napus HOM05D000315 ORTHO05D000527 2.1e-21 107.1 88 59.1
C02p37880 Brassica napus HOM05D000315 ORTHO05D000527 2.1e-21 107.1 88 59.1
BolC2t09805H Brassica oleracea HOM05D004707 ORTHO05D005837 2.1e-21 107.1 88 59.1
BraA02t07399Z Brassica rapa HOM05D000315 ORTHO05D000527 2.1e-21 107.1 88 59.1
Lalb_Chr17g0339181 Lupinus albus HOM05D004707 ORTHO05D005837 2.1e-21 107.1 85 57.6
AT4G00234 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 2.7e-21 106.7 88 60.2
arahy.Tifrunner.gnm1.ann1.HL3201 Arachis hypogaea HOM05D004707 ORTHO05D005837 2.7e-21 106.7 88 56.8
arahy.Tifrunner.gnm1.ann1.YM6R3T Arachis hypogaea HOM05D004707 ORTHO05D005837 2.7e-21 106.7 88 56.8
BcaB01g02199 Brassica carinata HOM05D004707 ORTHO05D005837 2.7e-21 106.7 88 58.0
CARHR248350 Cardamine hirsuta HOM05D004707 ORTHO05D005837 3.6e-21 106.3 88 58.0
Potri.002G162100 Populus trichocarpa HOM05D004707 ORTHO05D005837 3.6e-21 106.3 88 59.1
Hund16663 Selenicereus undatus HOM05D004707 ORTHO05D005837 3.6e-21 106.3 84 59.5
Nn6g33309 Nelumbo nucifera HOM05D004707 ORTHO05D005837 4.6e-21 105.9 85 57.6
AL6G53230 Arabidopsis lyrata HOM05D004707 ORTHO05D005837 6.1e-21 105.5 88 59.1
AT4G00290 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 6.1e-21 105.5 88 59.1
Thhalv10028609m.g Eutrema salsugineum HOM05D004707 ORTHO05D005837 6.1e-21 105.5 88 59.1
Gohir.D12G111000 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.0e-20 104.8 88 55.7
RcHm_v2.0_Chr1g0357041 Rosa chinensis HOM05D004707 ORTHO05D005837 1.0e-20 104.8 89 56.2
Sp6g00340 Schrenkiella parvula HOM05D004707 ORTHO05D005837 1.0e-20 104.8 88 58.0
Carub.0006s3698 Capsella rubella HOM05D004707 ORTHO05D005837 1.4e-20 104.4 88 58.0
FAN01G2554 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.4e-20 104.4 89 55.1
FAN06G2758 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.4e-20 104.4 89 55.1
FAN10G1283 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.4e-20 104.4 89 55.1
Gohir.D08G043200 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.4e-20 104.4 88 54.5
Gorai.008G120200 Gossypium raimondii HOM05D004707 ORTHO05D005837 1.4e-20 104.4 88 55.7
DCAR_008625 Daucus carota HOM05D001113 ORTHO05D000968 2.3e-20 103.6 85 64.7
FvH4_7g15010 Fragaria vesca HOM05D004707 ORTHO05D005837 2.3e-20 103.6 89 55.1
FAN06G3707 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.3e-20 103.6 89 55.1
FAN10G2784 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.3e-20 103.6 83 59.0
Gorai.004G041800 Gossypium raimondii HOM05D004707 ORTHO05D005837 3.9e-20 102.8 88 53.4
HanXRQChr14g0453371 Helianthus annuus HOM05D004707 ORTHO05D227563 3.9e-20 102.8 132 53.0
Aa31LG5G670 Aethionema arabicum HOM05D004707 ORTHO05D005837 5.1e-20 102.4 88 56.8
FAN03G0218 Fragaria x ananassa HOM05D004707 ORTHO05D005837 5.1e-20 102.4 89 53.9
Gohir.A08G032300 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.1e-19 101.3 88 52.3
Rhsim07G0012400 Rhododendron simsii HOM05D004707 ORTHO05D005837 2.6e-19 100.1 111 46.8
Solyc10g012050.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 3.3e-19 99.8 88 53.4
Sopen10g005790 Solanum pennellii HOM05D004707 ORTHO05D005837 3.3e-19 99.8 88 53.4
COL.COLO4_12751 Corchorus olitorius HOM05D004707 ORTHO05D005837 5.7e-19 99.0 88 52.3
Peaxi162Scf00020g01222 Petunia axillaris HOM05D004707 ORTHO05D005837 7.4e-19 98.6 85 58.8
CsaV3_3G008770 Cucumis sativus L. HOM05D004707 ORTHO05D005837 9.7e-19 98.2 88 53.4
Aqoxy5G00593 Aquilegia oxysepala HOM05D004707 ORTHO05D005837 1.7e-18 97.4 84 53.6
PSO063G6595 Papaver somniferum HOM05D004707 ORTHO05D005837 4.8e-18 95.9 85 52.9
ATR0661G226 Amborella trichopoda HOM05D004707 ORTHO05D005837 6.3e-18 95.5 85 50.6
MELO3C006094.2 Cucumis melo HOM05D004707 ORTHO05D005837 6.3e-18 95.5 88 52.3
HanXRQChr04g0101491 Helianthus annuus HOM05D021306 ORTHO05D227567 6.3e-18 95.5 62 80.6
Manes.01G254000 Manihot esculenta HOM05D004707 ORTHO05D005837 6.3e-18 95.5 88 52.3
HanXRQChr12g0364761 Helianthus annuus HOM05D021306 ORTHO05D000110 1.1e-17 94.7 66 75.8
SEGI_13365 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 2.4e-17 93.6 85 47.1
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 2.4e-17 93.6 85 50.6
Sed0023991 Sechium edule HOM05D004707 ORTHO05D005837 3.1e-17 93.2 88 50.0
ClCG05G001380 Citrullus lanatus HOM05D004707 ORTHO05D005837 5.3e-17 92.4 88 48.9
HanXRQChr09g0244171 Helianthus annuus HOM05D001524 ORTHO05D001392 5.3e-17 92.4 61 80.3
HanXRQChr13g0401311 Helianthus annuus HOM05D021306 ORTHO05D225008 5.3e-17 92.4 61 80.3
HanXRQChr02g0049641 Helianthus annuus HOM05D023464 ORTHO05D000110 1.2e-16 91.3 113 47.8
Pp3c10_20950 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.5e-16 90.9 84 46.4
AUR62022601 Chenopodium quinoa HOM05D004707 ORTHO05D005837 4.5e-16 89.4 84 48.8
HanXRQChr10g0312131 Helianthus annuus HOM05D021306 ORTHO05D220148 4.5e-16 89.4 65 80.0
MBI09_g26550_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 4.5e-16 89.4 85 54.1
Ah.05g180290 Amaranthus hybridus HOM05D004707 ORTHO05D005837 5.9e-16 89.0 84 46.4
Migut.B01788 Erythranthe guttata HOM05D004707 ORTHO05D005837 7.7e-16 88.6 88 47.7
AUR62004395 Chenopodium quinoa HOM05D004707 ORTHO05D005837 1.7e-15 87.4 84 47.6
HanXRQChr17g0563851 Helianthus annuus HOM05D000325 ORTHO05D000583 1.7e-15 87.4 53 84.9
EL10Ac1g00374 Beta vulgaris HOM05D004707 ORTHO05D005837 2.2e-15 87.0 88 43.2
Gohir.A12G107750 Gossypium hirsutum HOM05D004707 ORTHO05D005837 2.9e-15 86.7 81 53.1
HanXRQChr01g0029541 Helianthus annuus HOM05D023464 ORTHO05D000110 1.1e-14 84.7 108 45.4
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 1.4e-14 84.3 84 44.0
SHI13401 Sapria himalayana HOM05D004707 ORTHO05D005837 2.5e-14 83.6 88 44.3
vmacro20907 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 2.5e-14 83.6 87 51.7
vmacro13252 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 5.5e-14 82.4 94 43.6
unitig_26.g9294 Utricularia gibba HOM05D004707 ORTHO05D005837 9.4e-14 81.6 84 41.7
AagrBONN_evm.TU.Sc2ySwM_344.1481 Anthoceros agrestis HOM05D004707 ORTHO05D005837 1.6e-13 80.9 84 42.9
Os02g0681000 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 1.0e-12 78.2 88 40.9
Zm00001eb073200 Zea mays HOM05D004707 ORTHO05D005837 1.4e-12 77.8 88 40.9
HanXRQChr11g0324571 Helianthus annuus HOM05D004707 ORTHO05D222264 5.2e-12 75.9 76 56.6
Os04g0578700 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 5.2e-12 75.9 76 46.1
SMO116G0175 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 7.4e-11 72.0 84 44.0
Pp3c14_810 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.7e-10 70.9 85 38.8
HanXRQChr15g0464971 Helianthus annuus HOM05D021306 ORTHO05D221185 2.2e-10 70.5 52 73.1
TAR626G0135 Trochodendron aralioides HOM05D004707 ORTHO05D005837 4.8e-10 69.3 54 63.0
HanXRQChr06g0177151 Helianthus annuus HOM05D002934 ORTHO05D001564 5.3e-09 65.9 69 56.5
Mapoly0001s0022 Marchantia polymorpha HOM05D004707 ORTHO05D005837 2.0e-08 63.9 75 36.0
Pp3c15_19020 Physcomitrium patens HOM05D004707 ORTHO05D005837 3.5e-08 63.2 112 33.0
Rhsim05G0008500 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.3e-07 61.2 98 39.8
Pp3c9_20150 Physcomitrium patens HOM05D004707 ORTHO05D005837 6.5e-07 58.9 78 34.6
Rhsim05G0021600 Rhododendron simsii HOM05D004707 ORTHO05D005837 6.5e-07 58.9 78 42.3
HanXRQChr02g0057401 Helianthus annuus HOM05D014775 ORTHO05D222432 9.4e-06 55.1 93 39.8


User provided reference genes

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