Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 0.0e+00 1456.0 749 100.0
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 0.0e+00 1279.6 753 87.4
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 0.0e+00 1268.1 740 87.7
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 0.0e+00 1101.3 748 75.7
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1090.9 748 75.4
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 0.0e+00 1088.9 748 75.0
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1087.8 756 74.5
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 0.0e+00 1087.8 761 73.5
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 0.0e+00 1084.3 748 74.3
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 0.0e+00 1084.3 754 74.0
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 0.0e+00 1077.0 757 73.6
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 0.0e+00 1075.1 754 73.7
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 5.1e-312 1073.5 749 73.7
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 1.0e-311 1073.2 746 74.5
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 1.0e-310 1069.7 744 74.7
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 1.7e-310 1068.9 755 72.2
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 8.6e-310 1066.6 750 73.3
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 1.1e-309 1066.2 761 72.3
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 2.5e-309 1065.1 749 72.8
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 2.5e-309 1065.1 749 72.8
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 4.3e-309 1064.3 746 73.3
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 1.2e-308 1062.8 750 73.1
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 1.8e-307 1058.9 747 74.4
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 2.4e-307 1058.5 747 72.3
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 3.1e-307 1058.1 750 72.7
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 1.5e-306 1055.8 749 72.1
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 1.3e-305 1052.7 747 73.0
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 2.9e-305 1051.6 742 74.1
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 4.9e-305 1050.8 751 73.6
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 6.4e-305 1050.4 750 72.5
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 1.1e-304 1049.7 744 72.6
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 1.4e-304 1049.3 749 72.4
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 1.9e-304 1048.9 749 72.1
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 3.2e-304 1048.1 749 73.8
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 9.2e-304 1046.6 746 71.8
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 1.6e-303 1045.8 756 72.5
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 1.6e-303 1045.8 792 69.9
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 1.6e-303 1045.8 743 73.2
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 2.1e-303 1045.4 753 72.1
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 2.7e-303 1045.0 749 72.0
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 3.5e-303 1044.6 735 72.7
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 6.0e-303 1043.9 748 73.8
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 7.8e-303 1043.5 758 71.4
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.0e-302 1043.1 753 72.9
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 1.5e-301 1039.3 749 72.2
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 1.9e-301 1038.9 748 73.8
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 7.3e-301 1036.9 749 72.5
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 2.1e-300 1035.4 755 71.4
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 2.8e-300 1035.0 747 70.8
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 4.7e-300 1034.2 751 71.8
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 1.1e-299 1033.1 748 71.3
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 2.4e-299 1031.9 751 71.9
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 3.1e-299 1031.6 751 71.2
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 6.9e-299 1030.4 709 75.2
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 1.2e-298 1029.6 785 69.3
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 2.6e-298 1028.5 747 70.5
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 4.4e-298 1027.7 748 71.3
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 4.9e-297 1024.2 780 69.4
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 8.4e-297 1023.5 778 70.3
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 1.9e-296 1022.3 748 71.1
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 2.4e-296 1021.9 753 70.7
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 1.2e-295 1019.6 752 70.6
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.6e-295 1019.2 768 69.4
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.7e-295 1018.5 758 71.6
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 3.5e-295 1018.1 748 71.3
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 7.8e-295 1016.9 754 70.4
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 1.3e-294 1016.1 750 70.0
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 5.6e-293 1010.7 742 69.8
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 2.8e-292 1008.4 752 69.8
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 6.2e-292 1007.3 747 70.0
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 1.1e-291 1006.5 747 69.5
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 1.4e-291 1006.1 752 69.1
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 2.4e-291 1005.4 758 68.9
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 1.5e-290 1002.7 747 70.0
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 2.6e-290 1001.9 747 69.2
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 2.6e-290 1001.9 752 68.9
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 7.6e-290 1000.3 788 67.1
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 2.9e-289 998.4 708 73.9
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 6.4e-289 997.3 744 68.7
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 4.2e-288 994.6 753 70.4
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 1.3e-286 989.6 743 69.0
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 4.3e-285 984.6 758 68.1
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.3e-284 983.0 753 70.1
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 3.4e-282 974.9 750 68.1
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.5e-277 959.5 652 74.5
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 1.9e-277 959.1 709 69.4
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 3.3e-277 958.4 747 67.3
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 2.5e-272 942.2 701 70.2
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 7.4e-269 930.6 658 72.3
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 9.0e-267 923.7 651 73.4
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 2.0e-266 922.5 753 66.1
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 2.6e-266 922.2 838 59.7
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 1.6e-247 859.8 742 59.7
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 2.4e-243 845.9 741 59.4
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 5.2e-238 828.2 535 78.1
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 8.3e-228 794.3 722 60.4
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 2.8e-223 779.2 500 79.8
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 2.3e-217 759.6 555 71.9
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.2e-212 743.0 566 70.0
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 3.3e-208 729.2 606 64.7
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.6e-186 657.1 517 68.3
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 8.4e-180 634.8 620 55.2
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 7.6e-173 611.7 684 52.8
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 7.9e-170 601.7 425 72.5
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 1.3e-161 574.3 433 70.2
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 1.4e-155 554.3 431 68.2
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 2.7e-154 550.1 437 66.4
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 1.7e-143 514.2 435 60.7
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 5.3e-142 509.2 418 64.8
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 2.2e-140 503.8 437 60.4
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 3.1e-134 483.4 403 63.0
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 4.5e-125 453.0 371 65.2
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 8.5e-124 448.7 371 65.0
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 6.3e-119 432.6 498 51.4
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 7.3e-99 365.9 222 80.6
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 1.7e-92 344.7 267 69.3
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 3.3e-91 340.5 208 81.2
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 3.3e-67 260.8 230 61.3
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 2.8e-66 257.7 168 73.8
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 9.0e-65 252.7 160 79.4
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 8.1e-58 229.6 137 83.9
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.8e-52 211.8 142 74.6
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 3.3e-51 207.6 156 69.2
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 2.1e-50 204.9 296 42.6
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 4.0e-49 200.7 129 75.2
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 4.2e-46 190.7 287 44.3
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 9.3e-46 189.5 302 44.7
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 3.3e-43 181.0 97 88.7
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 1.2e-40 172.6 105 80.0
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 1.4e-38 165.6 93 89.2
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 3.9e-36 157.5 146 57.5
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 8.7e-36 156.4 243 40.3
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 4.3e-35 154.1 135 63.7
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.8e-34 151.4 141 56.7
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 1.4e-28 132.5 91 71.4
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 9.7e-27 126.3 94 68.1
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 2.6e-24 118.2 115 53.9
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 4.2e-22 110.9 133 47.4
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 3.0e-20 104.8 176 44.3
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 7.4e-19 100.1 71 70.4
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.8e-17 95.5 58 74.1
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 2.0e-16 92.0 58 70.7
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 7.7e-16 90.1 167 34.7
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 3.8e-15 87.8 144 42.4
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 5.0e-15 87.4 80 58.8
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 9.4e-14 83.2 52 78.8
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 1.0e-12 79.7 52 76.9
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 9.7e-11 73.2 74 59.5
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 3.7e-10 71.2 44 75.0
ECA234G1590 Erigeron canadensis HOM05D004674 ORTHO05D187700 6.3e-10 70.5 67 61.2
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 2.0e-08 65.5 36 91.7
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 1.9e-06 58.9 54 63.0
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.4e-06 56.6 29 96.6
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.4e-06 56.6 29 96.6


User provided reference genes

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