Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0252561 Helianthus annuus HOM05D005933 ORTHO05D007366 1.1e-264 916.0 456 100.0
ECA236G1702 Erigeron canadensis HOM05D005933 ORTHO05D007366 1.6e-210 736.1 461 79.8
Lsat_1_v5_gn_8_81281 Lactuca sativa HOM05D005933 ORTHO05D007366 1.8e-209 732.6 464 77.6
Actinidia39225 Actinidia chinensis HOM05D005933 ORTHO05D007366 1.3e-167 593.6 477 65.8
Actinidia09329 Actinidia chinensis HOM05D005933 ORTHO05D007366 2.7e-165 585.9 477 65.6
Hma1.2p1_2002F.1_g310760 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 2.5e-158 562.8 470 62.8
GSVIVG01033275001 Vitis vinifera HOM05D005933 ORTHO05D007366 2.3e-156 556.2 471 62.0
Haze_19854 Corylus avellana HOM05D005933 ORTHO05D007366 7.4e-155 551.2 454 64.1
PGSC0003DMG400023688 Solanum tuberosum HOM05D005933 ORTHO05D007366 1.1e-153 547.4 482 59.3
CSS0022562 Camellia sinensis var. sinensis HOM05D005933 ORTHO05D007366 2.4e-153 546.2 469 61.4
Solyc10g080110.3 Solanum lycopersicum HOM05D005933 ORTHO05D007366 3.4e-152 542.3 478 60.0
Rhsim03G0021100 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.0e-151 540.8 465 61.9
Ciclev10004945m.g Citrus clementina HOM05D005933 ORTHO05D007366 1.3e-151 540.4 468 60.7
Lj1g0013042 Lotus japonicus HOM05D005933 ORTHO05D007366 5.0e-151 538.5 467 60.4
Sopen10g030730 Solanum pennellii HOM05D005933 ORTHO05D007366 5.0e-151 538.5 478 59.8
CiPaw.08G166600 Carya illinoinensis HOM05D005933 ORTHO05D007366 3.6e-149 532.3 465 60.0
vmacro07854 Vaccinium macrocarpon HOM05D005933 ORTHO05D007366 4.7e-149 531.9 505 57.4
arahy.Tifrunner.gnm1.ann1.T110QE Arachis hypogaea HOM05D005933 ORTHO05D007366 1.0e-148 530.8 467 60.0
arahy.Tifrunner.gnm1.ann1.EHL0AN Arachis hypogaea HOM05D005933 ORTHO05D007366 1.4e-148 530.4 467 59.7
Lju124A41G42 Lonicera japonica HOM05D005933 ORTHO05D007366 1.8e-148 530.0 440 63.0
Potri.006G051300 Populus trichocarpa HOM05D005933 ORTHO05D007366 1.8e-148 530.0 467 59.1
Rhsim03G0022400 Rhododendron simsii HOM05D005933 ORTHO05D007366 2.3e-148 529.6 466 60.7
Thecc.05G153300 Theobroma cacao HOM05D005933 ORTHO05D007366 3.9e-148 528.9 469 59.3
Peaxi162Scf00618g00022 Petunia axillaris HOM05D005933 ORTHO05D007366 5.2e-148 528.5 472 58.3
QL07p000522 Quercus lobata HOM05D005933 ORTHO05D007366 6.7e-148 528.1 466 59.9
QL07p000555 Quercus lobata HOM05D005933 ORTHO05D007366 8.8e-148 527.7 474 59.9
Sabra06G0036000 Salix brachista HOM05D005933 ORTHO05D007366 1.5e-147 526.9 458 60.5
DCAR_009061 Daucus carota HOM05D005933 ORTHO05D007366 3.3e-147 525.8 485 58.4
Duzib093G2041 Durio zibethinus HOM05D005933 ORTHO05D007366 4.4e-147 525.4 466 58.4
Cc06_g17560 Coffea canephora HOM05D005933 ORTHO05D007366 7.4e-147 524.6 490 56.9
Glyma.03G136900 Glycine max HOM05D005933 ORTHO05D007366 1.7e-146 523.5 467 58.7
Gorai.007G186200 Gossypium raimondii HOM05D005933 ORTHO05D007366 1.7e-146 523.5 469 59.1
Gohir.D11G173800 Gossypium hirsutum HOM05D005933 ORTHO05D007366 2.2e-146 523.1 469 59.1
Nitab4.5_0008648g0010 Nicotiana tabacum HOM05D005933 ORTHO05D007366 4.8e-146 521.9 501 56.3
COL.COLO4_28284 Corchorus olitorius HOM05D005933 ORTHO05D007366 2.4e-145 519.6 464 58.4
Lalb_Chr25g0287121 Lupinus albus HOM05D005933 ORTHO05D007366 2.4e-145 519.6 464 59.5
RcHm_v2.0_Chr3g0482381 Rosa chinensis HOM05D005933 ORTHO05D007366 3.1e-145 519.2 472 57.2
MSTRG.19860 Avicennia marina HOM05D005933 ORTHO05D007366 4.1e-145 518.8 476 58.8
TWI74G0083 Tripterygium wilfordii HOM05D005933 ORTHO05D007366 4.1e-145 518.8 472 57.8
Phvul.001G132100 Phaseolus vulgaris HOM05D005933 ORTHO05D007366 1.6e-144 516.9 465 58.9
Gohir.A11G167500 Gossypium hirsutum HOM05D005933 ORTHO05D007366 2.0e-144 516.5 470 58.7
Dinv39604 Davidia involucrata HOM05D005933 ORTHO05D007366 2.6e-144 516.2 390 68.7
Medtr7g091500 Medicago truncatula HOM05D005933 ORTHO05D007366 2.6e-144 516.2 468 59.4
CANSAT78G0457 Cannabis sativa HOM05D005933 ORTHO05D007366 2.9e-143 512.7 476 58.6
Ca_08457_v3 Cicer arietinum L. HOM05D005933 ORTHO05D007366 6.5e-143 511.5 468 58.3
FvH4_6g23820 Fragaria vesca HOM05D005933 ORTHO05D007366 8.5e-143 511.1 467 57.0
Oeu017944.1 Olea europaea HOM05D005933 ORTHO05D007366 8.5e-143 511.1 449 59.5
Manes.09G022000 Manihot esculenta HOM05D005933 ORTHO05D007366 2.5e-142 509.6 445 59.1
FAN02G2268 Fragaria x ananassa HOM05D005933 ORTHO05D007366 3.2e-142 509.2 470 56.8
FAN05G5216 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.2e-141 507.3 470 56.6
Nitab4.5_0009442g0020 Nicotiana tabacum HOM05D005933 ORTHO05D007366 2.1e-141 506.5 460 57.6
PGR004G0721 Punica granatum HOM05D005933 ORTHO05D007366 1.8e-140 503.4 473 57.5
Migut.J01758 Erythranthe guttata HOM05D005933 ORTHO05D007366 4.0e-140 502.3 472 57.4
Eucgr.A02347 Eucalyptus grandis HOM05D005933 ORTHO05D007366 1.5e-139 500.4 465 58.3
MD12G1074000 Malus domestica HOM05D005933 ORTHO05D007366 1.5e-139 500.4 473 57.7
Cpa.g.sc92.52 Carica papaya HOM05D005933 ORTHO05D007366 4.4e-139 498.8 446 57.8
C01p02220 Brassica napus HOM05D005933 ORTHO05D007366 5.7e-139 498.4 462 56.9
CARHR244310 Cardamine hirsuta HOM05D005933 ORTHO05D007366 7.5e-139 498.0 468 55.8
SalBow6G0452 Salvia bowleyana HOM05D005933 ORTHO05D007366 1.3e-138 497.3 449 59.5
BolC1t00214H Brassica oleracea HOM05D005933 ORTHO05D007366 2.2e-138 496.5 462 56.7
A01p02040 Brassica napus HOM05D005933 ORTHO05D007366 4.8e-138 495.4 462 57.6
AT4G35910 Arabidopsis thaliana HOM05D005933 ORTHO05D007366 6.3e-138 495.0 469 55.9
Psat3g072720 Pisum sativum HOM05D005933 ORTHO05D007366 8.2e-138 494.6 445 58.9
FAN14G1069 Fragaria x ananassa HOM05D005933 ORTHO05D007366 3.1e-137 492.7 450 56.7
EL10Ac3g07091 Beta vulgaris HOM05D005933 ORTHO05D007366 9.1e-137 491.1 470 55.7
AUR62026040 Chenopodium quinoa HOM05D005933 ORTHO05D007366 9.1e-137 491.1 463 56.2
Thhalv10025158m.g Eutrema salsugineum HOM05D005933 ORTHO05D007366 2.7e-136 489.6 470 56.0
AL7G15130 Arabidopsis lyrata HOM05D005933 ORTHO05D007366 3.5e-136 489.2 467 55.5
THA.LOC104811196 Tarenaya hassleriana HOM05D005933 ORTHO05D007366 1.7e-135 486.9 467 56.1
BraA01t00193Z Brassica rapa HOM05D005933 ORTHO05D007366 2.9e-135 486.1 462 56.3
Aa31LG6G13690 Aethionema arabicum HOM05D005933 ORTHO05D007366 1.5e-134 483.8 472 54.2
Sp7g34530 Schrenkiella parvula HOM05D005933 ORTHO05D007366 3.2e-134 482.6 470 54.9
Carub.0007s0431 Capsella rubella HOM05D005933 ORTHO05D007366 4.2e-134 482.3 468 55.3
MELO3C009712.2 Cucumis melo HOM05D005933 ORTHO05D007366 6.1e-133 478.4 476 52.9
SGA_v2.0_scaffold69G23116 Striga asiatica HOM05D005933 ORTHO05D007366 8.0e-133 478.0 463 55.9
PSO782G3339 Papaver somniferum HOM05D005933 ORTHO05D007366 1.8e-132 476.9 475 55.2
BcaNung03520 Brassica carinata HOM05D005933 ORTHO05D007366 2.3e-132 476.5 463 55.9
Hund05286 Selenicereus undatus HOM05D005933 ORTHO05D007366 3.0e-132 476.1 400 62.5
CsaV3_3G039700 Cucumis sativus L. HOM05D005933 ORTHO05D007366 4.0e-132 475.7 476 53.8
Aqoxy5G03564 Aquilegia oxysepala HOM05D005933 ORTHO05D007366 1.2e-131 474.2 468 54.3
VMungo1383G3081 Vigna mungo HOM05D005933 ORTHO05D007366 2.6e-131 473.0 566 48.1
TPR.G854 Trifolium pratense HOM05D005933 ORTHO05D007366 4.4e-131 472.2 402 61.9
Peaxi162Scf00354g00225 Petunia axillaris HOM05D005933 ORTHO05D007366 1.8e-129 466.8 453 54.5
Sed0001053 Sechium edule HOM05D005933 ORTHO05D007366 3.1e-129 466.1 476 54.0
Hma1.2p1_2002F.1_g310770 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 4.1e-129 465.7 364 65.7
CAN.G128.8 Capsicum annuum HOM05D005933 ORTHO05D007366 2.0e-128 463.4 379 62.0
Ah.13g075070 Amaranthus hybridus HOM05D005933 ORTHO05D007366 2.9e-127 459.5 452 55.3
Atru.chr1.1098 Acer truncatum HOM05D005933 ORTHO05D007366 6.8e-124 448.4 369 64.0
ClCG10G016640 Citrullus lanatus HOM05D005933 ORTHO05D007366 8.9e-124 448.0 526 48.3
AUR62024451 Chenopodium quinoa HOM05D005933 ORTHO05D007366 9.8e-123 444.5 484 51.9
Cfa008569 Carpinus fangiana HOM05D005933 ORTHO05D007366 1.0e-116 424.5 331 65.0
ATR0686G233 Amborella trichopoda HOM05D005933 ORTHO05D007366 4.9e-114 415.6 467 50.1
MBI16_g31719_MAGBIO Magnolia biondii HOM05D005933 ORTHO05D007366 4.7e-109 399.1 476 48.3
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 3.7e-106 389.4 464 49.8
Oeu008914.1 Olea europaea HOM05D005933 ORTHO05D007366 8.3e-106 388.3 352 59.9
Oeu008916.1 Olea europaea HOM05D005933 ORTHO05D007366 8.3e-106 388.3 352 59.9
Os12g0588900 Oryza sativa ssp. japonica HOM05D005933 ORTHO05D007366 4.7e-101 372.5 463 46.2
Prupe.7G060900 Prunus persica HOM05D005933 ORTHO05D007366 9.2e-97 358.2 323 58.5
SEGI_18184 Sequoiadendron giganteum HOM05D005933 ORTHO05D007366 2.3e-95 353.6 490 43.1
Zm00001eb135000 Zea mays HOM05D005933 ORTHO05D007366 2.8e-93 346.7 465 44.1
Sc13g0001740 Simmondsia chinensis HOM05D005933 ORTHO05D007366 3.4e-91 339.7 291 62.2
HPP92_017763 Vanilla planifolia HOM05D005933 ORTHO05D007366 3.8e-82 309.7 355 47.3
SHI32975 Sapria himalayana HOM05D005933 ORTHO05D000023 2.4e-81 307.0 338 49.7
CDE09G0169 Ceratophyllum demersum HOM05D005933 ORTHO05D007366 8.7e-79 298.5 271 56.1
TAR633G2718 Trochodendron aralioides HOM05D005933 ORTHO05D007366 1.9e-78 297.4 230 63.9
BcaNung04276 Brassica carinata HOM05D005933 ORTHO05D007366 2.4e-73 280.4 442 42.1
AagrBONN_evm.TU.Sc2ySwM_117.299 Anthoceros agrestis HOM05D005933 ORTHO05D007366 2.7e-72 276.9 450 39.1
Glyma.19G139200 Glycine max HOM05D005933 ORTHO05D007366 7.9e-72 275.4 234 58.5
Mapoly0165s0023 Marchantia polymorpha HOM05D005933 ORTHO05D007366 5.6e-70 269.2 462 37.0
SMO145G0218 Selaginella moellendorffii HOM05D005933 ORTHO05D007366 3.2e-65 253.4 349 43.3
Rhsim03G0020400 Rhododendron simsii HOM05D005933 ORTHO05D007366 3.7e-61 240.0 233 55.8
Cfa017604 Carpinus fangiana HOM05D005933 ORTHO05D007366 6.3e-53 212.6 382 40.1
Pp3c14_19420 Physcomitrium patens HOM05D005933 ORTHO05D007366 6.9e-52 209.1 303 41.6
Cfa017749 Carpinus fangiana HOM05D005933 ORTHO05D007366 2.2e-45 187.6 215 51.6
CDE02G1215 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 3.1e-44 183.7 183 55.2
Atru.chr1.1100 Acer truncatum HOM05D005933 ORTHO05D007366 6.1e-40 169.5 166 51.8
C07p62070 Brassica napus HOM05D005933 ORTHO05D007366 8.8e-39 165.6 162 58.0
BolC7t46624H Brassica oleracea HOM05D005933 ORTHO05D007366 8.8e-39 165.6 162 58.0
Sc13g0001730 Simmondsia chinensis HOM05D005933 ORTHO05D007366 1.7e-37 161.4 150 54.7
BcaNung03522 Brassica carinata HOM05D005933 ORTHO05D007366 6.3e-37 159.5 142 54.2
CBR_g982 Chara braunii HOM05D005933 ORTHO05D007366 1.8e-36 157.9 455 27.7
MD12G1074100 Malus domestica HOM05D005933 ORTHO05D007366 2.5e-33 147.5 191 43.5
Cc06_g12380 Coffea canephora HOM05D005933 ORTHO05D007366 4.2e-33 146.7 170 51.8
TAR633G2604 Trochodendron aralioides HOM05D005933 ORTHO05D007366 1.5e-30 138.3 107 69.2
TAR636G2120 Trochodendron aralioides HOM05D005933 ORTHO05D007366 1.5e-25 121.7 118 57.6
Cre01.g043500 Chlamydomonas reinhardtii HOM05D005933 ORTHO05D007366 1.9e-17 94.7 168 35.1
Dinv12483 Davidia involucrata HOM05D005933 ORTHO05D007366 6.8e-15 86.3 105 47.6
Rhsim03G0022600 Rhododendron simsii HOM05D005933 ORTHO05D007366 4.8e-13 80.1 57 64.9
Nn8g40508 Nelumbo nucifera HOM05D005933 ORTHO05D007366 1.1e-12 79.0 69 60.9
Rhsim03G0024000 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.4e-12 78.6 57 64.9
Nn8g40507 Nelumbo nucifera HOM05D005933 ORTHO05D007366 5.9e-11 73.2 106 43.4
SHI32976 Sapria himalayana HOM05D000105 ORTHO05D000023 2.9e-10 70.9 108 40.7


User provided reference genes

Program Settings