Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 2.3e-45 185.3 98 100.0
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 1.3e-43 179.5 95 98.9
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 1.3e-43 179.5 95 98.9
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 8.8e-37 156.8 82 100.0
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 4.1e-34 147.9 86 90.7
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 1.9e-31 139.0 86 84.9
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 4.5e-25 117.9 86 75.6
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.1e-23 113.2 84 70.2
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.1e-23 113.2 84 70.2
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 2.5e-23 112.1 85 71.8
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 3.2e-23 111.7 84 67.9
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 3.2e-23 111.7 84 67.9
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 7.2e-23 110.5 84 67.9
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 2.1e-22 109.0 84 67.9
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 2.1e-22 109.0 84 66.7
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 4.7e-22 107.8 82 70.7
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 4.7e-22 107.8 86 67.4
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 6.1e-22 107.5 84 67.9
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 8.0e-22 107.1 93 66.7
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 1.4e-21 106.3 81 70.4
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 1.4e-21 106.3 82 70.7
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 1.4e-21 106.3 82 70.7
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 1.8e-21 105.9 84 67.9
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.8e-21 105.9 84 66.7
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 1.8e-21 105.9 84 66.7
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 4.0e-21 104.8 82 69.5
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 4.0e-21 104.8 84 65.5
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 5.2e-21 104.4 81 67.9
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 5.2e-21 104.4 82 70.7
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 8.8e-21 103.6 84 65.5
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 1.1e-20 103.2 84 64.3
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 2.0e-20 102.4 82 72.0
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 2.0e-20 102.4 82 69.5
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 2.0e-20 102.4 82 70.7
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 2.6e-20 102.1 81 70.4
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 5.7e-20 100.9 85 65.9
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 7.4e-20 100.5 83 67.5
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 9.7e-20 100.1 82 68.3
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 9.7e-20 100.1 82 67.1
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.3e-19 99.8 85 62.4
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.3e-19 99.8 85 62.4
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 1.7e-19 99.4 82 68.3
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 2.8e-19 98.6 84 67.9
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 2.8e-19 98.6 82 67.1
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 2.8e-19 98.6 82 67.1
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 2.8e-19 98.6 85 63.5
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 3.7e-19 98.2 81 65.4
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 4.8e-19 97.8 81 64.2
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 6.3e-19 97.4 91 60.4
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 6.3e-19 97.4 82 67.1
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 6.3e-19 97.4 87 64.4
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 6.3e-19 97.4 84 59.5
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 1.4e-18 96.3 81 64.2
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 1.8e-18 95.9 81 65.4
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 3.1e-18 95.1 84 61.9
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 3.1e-18 95.1 84 61.9
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 3.1e-18 95.1 81 61.7
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 3.1e-18 95.1 84 64.3
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 4.1e-18 94.7 83 62.7
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 5.3e-18 94.4 84 63.1
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 5.3e-18 94.4 83 61.4
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 7.0e-18 94.0 85 62.4
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 1.6e-17 92.8 83 63.9
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 2.6e-17 92.0 82 65.9
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 4.5e-17 91.3 83 60.2
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 5.9e-17 90.9 84 59.5
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 1.0e-16 90.1 82 65.9
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 1.3e-16 89.7 85 60.0
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 1.3e-16 89.7 82 58.5
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 1.3e-16 89.7 94 58.5
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 1.7e-16 89.4 82 64.6
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 2.9e-16 88.6 82 57.3
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 3.8e-16 88.2 85 60.0
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 3.8e-16 88.2 83 60.2
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 3.8e-16 88.2 83 60.2
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 3.8e-16 88.2 80 61.2
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 5.0e-16 87.8 83 60.2
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 8.5e-16 87.0 83 62.7
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 8.5e-16 87.0 81 63.0
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 8.5e-16 87.0 82 62.2
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 1.1e-15 86.7 83 60.2
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.1e-15 86.7 82 59.8
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 1.5e-15 86.3 80 60.0
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 1.9e-15 85.9 83 60.2
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.9e-15 85.9 82 61.0
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 2.5e-15 85.5 83 57.8
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 3.2e-15 85.1 83 60.2
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 3.2e-15 85.1 83 59.0
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 3.2e-15 85.1 83 60.2
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 4.2e-15 84.7 99 53.5
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 4.2e-15 84.7 82 59.8
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 7.2e-15 84.0 82 59.8
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 7.2e-15 84.0 83 59.0
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 9.4e-15 83.6 81 60.5
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 1.2e-14 83.2 59 74.6
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 1.6e-14 82.8 82 59.8
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 2.1e-14 82.4 74 60.8
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 2.1e-14 82.4 83 57.8
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 2.7e-14 82.0 82 57.3
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 4.7e-14 81.3 83 55.4
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 4.7e-14 81.3 124 46.0
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 6.1e-14 80.9 74 59.5
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 6.1e-14 80.9 75 60.0
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 6.1e-14 80.9 74 60.8
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 1.8e-13 79.3 81 58.0
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 2.3e-13 79.0 86 58.1
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 5.2e-13 77.8 57 68.4
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 9.1e-10 67.0 81 51.9
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 2.0e-09 65.9 82 51.2
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 2.2e-08 62.4 87 48.3
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 2.5e-07 58.9 49 71.4
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 2.5e-07 58.9 87 50.6
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.6e-06 56.2 54 61.1
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 4.7e-06 54.7 44 59.1


User provided reference genes

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