Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0244121 Helianthus annuus HOM05D004312 ORTHO05D005394 1.5e-103 379.4 182 100.0
HanXRQChr15g0495681 Helianthus annuus HOM05D004312 ORTHO05D005394 2.0e-63 246.1 133 89.5
HanXRQChr11g0332981 Helianthus annuus HOM05D004312 ORTHO05D005394 6.2e-44 181.4 127 68.5
Actinidia35316 Actinidia chinensis HOM05D004312 ORTHO05D005394 4.0e-43 178.7 131 66.4
Lsat_1_v5_gn_7_108381 Lactuca sativa HOM05D004312 ORTHO05D005394 4.0e-43 178.7 127 66.9
ECA236G2119 Erigeron canadensis HOM05D004312 ORTHO05D005394 8.9e-43 177.6 127 66.1
arahy.Tifrunner.gnm1.ann1.08T3T7 Arachis hypogaea HOM05D004312 ORTHO05D005394 1.2e-42 177.2 127 66.1
arahy.Tifrunner.gnm1.ann1.43SLKT Arachis hypogaea HOM05D004312 ORTHO05D005394 1.2e-42 177.2 127 66.1
arahy.Tifrunner.gnm1.ann1.IBM9RL Arachis hypogaea HOM05D004312 ORTHO05D005394 1.2e-42 177.2 127 66.1
arahy.Tifrunner.gnm1.ann1.Z28QK4 Arachis hypogaea HOM05D004312 ORTHO05D005394 1.2e-42 177.2 127 66.1
CSS0011160 Camellia sinensis var. sinensis HOM05D004312 ORTHO05D005394 2.0e-42 176.4 127 66.1
PGSC0003DMG401019226 Solanum tuberosum HOM05D004312 ORTHO05D005394 2.0e-42 176.4 127 65.4
Hma1.2p1_0562F.1_g179020 Hydrangea macrophylla HOM05D004312 ORTHO05D005394 2.6e-42 176.0 126 67.5
Migut.M01812 Erythranthe guttata HOM05D004312 ORTHO05D005394 3.4e-42 175.6 127 66.1
Lj8A165T113 Lonicera japonica HOM05D004312 ORTHO05D005394 3.4e-42 175.6 127 66.1
Solyc07g064090.3 Solanum lycopersicum HOM05D004312 ORTHO05D005394 3.4e-42 175.6 127 64.6
Sopen07g032230 Solanum pennellii HOM05D004312 ORTHO05D005394 3.4e-42 175.6 127 64.6
CANSAT25G0949 Cannabis sativa HOM05D004312 ORTHO05D005394 4.4e-42 175.3 127 65.4
PGR031G3547 Punica granatum HOM05D004312 ORTHO05D005394 4.4e-42 175.3 127 65.4
DCAR_008679 Daucus carota HOM05D004312 ORTHO05D005394 5.8e-42 174.9 126 65.9
Dinv22305 Davidia involucrata HOM05D004312 ORTHO05D005394 7.5e-42 174.5 127 65.4
GSVIVG01014605001 Vitis vinifera HOM05D004312 ORTHO05D005394 7.5e-42 174.5 127 65.4
CiPaw.11G183600 Carya illinoinensis HOM05D004312 ORTHO05D005394 9.8e-42 174.1 127 63.8
Nitab4.5_0000397g0030 Nicotiana tabacum HOM05D004312 ORTHO05D005394 1.7e-41 173.3 127 63.8
Nitab4.5_0009192g0020 Nicotiana tabacum HOM05D004312 ORTHO05D005394 1.7e-41 173.3 127 63.8
Cc05_g13230 Coffea canephora HOM05D004312 ORTHO05D005394 2.2e-41 172.9 127 65.4
Thecc.07G052900 Theobroma cacao HOM05D004312 ORTHO05D005394 2.2e-41 172.9 127 63.0
Sed0007148 Sechium edule HOM05D004312 ORTHO05D005394 2.9e-41 172.6 127 64.6
TAR624G0412 Trochodendron aralioides HOM05D004312 ORTHO05D005394 2.9e-41 172.6 127 65.4
SGA_v2.0_scaffold9G04799 Striga asiatica HOM05D004312 ORTHO05D005394 3.7e-41 172.2 127 64.6
unitig_746.g26649 Utricularia gibba HOM05D004312 ORTHO05D005394 3.7e-41 172.2 127 65.4
MSTRG.6890 Avicennia marina HOM05D004312 ORTHO05D005394 1.1e-40 170.6 125 65.6
MD11G1227100 Malus domestica HOM05D004312 ORTHO05D005394 1.1e-40 170.6 127 64.6
Duzib213G0708 Durio zibethinus HOM05D004312 ORTHO05D005394 1.9e-40 169.9 127 63.0
Ciclev10008697m.g Citrus clementina HOM05D004312 ORTHO05D005394 2.4e-40 169.5 127 62.2
MD03G1211700 Malus domestica HOM05D004312 ORTHO05D005394 2.4e-40 169.5 127 63.8
QL08p013340 Quercus lobata HOM05D004312 ORTHO05D005394 2.4e-40 169.5 127 61.4
ClCG05G014780 Citrullus lanatus HOM05D004312 ORTHO05D005394 3.2e-40 169.1 127 63.0
Glyma.02G152200 Glycine max HOM05D004312 ORTHO05D005394 3.2e-40 169.1 127 61.4
SalBow1G0135 Salvia bowleyana HOM05D004312 ORTHO05D005394 3.2e-40 169.1 126 64.3
VMungo1215G3096 Vigna mungo HOM05D004312 ORTHO05D005394 3.2e-40 169.1 127 61.4
Cfa020416 Carpinus fangiana HOM05D004312 ORTHO05D005394 4.1e-40 168.7 127 62.2
Gohir.A13G141400 Gossypium hirsutum HOM05D004312 ORTHO05D005394 4.1e-40 168.7 127 62.2
Gohir.D13G146100 Gossypium hirsutum HOM05D004312 ORTHO05D005394 4.1e-40 168.7 127 62.2
Gorai.013G163900 Gossypium raimondii HOM05D004312 ORTHO05D005394 4.1e-40 168.7 127 62.2
MBI18_g30687_MAGBIO Magnolia biondii HOM05D004312 ORTHO05D005394 4.1e-40 168.7 127 61.4
AUR62015644 Chenopodium quinoa HOM05D004312 ORTHO05D005394 5.4e-40 168.3 127 63.0
AUR62020555 Chenopodium quinoa HOM05D004312 ORTHO05D005394 5.4e-40 168.3 127 63.0
MELO3C018124.2 Cucumis melo HOM05D004312 ORTHO05D005394 5.4e-40 168.3 127 61.4
CsaV3_3G022910 Cucumis sativus L. HOM05D004312 ORTHO05D005394 5.4e-40 168.3 127 61.4
Eucgr.F03425 Eucalyptus grandis HOM05D004312 ORTHO05D005394 5.4e-40 168.3 127 63.0
TPR.G33318 Trifolium pratense HOM05D004312 ORTHO05D005394 5.4e-40 168.3 127 62.2
Ca_12696_v3 Cicer arietinum L. HOM05D004312 ORTHO05D005394 7.1e-40 167.9 127 61.4
FAN25G1427 Fragaria x ananassa HOM05D004312 ORTHO05D005394 7.1e-40 167.9 127 63.8
Sc07g0002710 Simmondsia chinensis HOM05D004312 ORTHO05D005394 7.1e-40 167.9 127 63.8
FvH4_3g21810 Fragaria vesca HOM05D004312 ORTHO05D005394 9.2e-40 167.5 127 63.8
FAN11G3136 Fragaria x ananassa HOM05D004312 ORTHO05D005394 9.2e-40 167.5 127 63.8
Manes.15G076500 Manihot esculenta HOM05D004312 ORTHO05D005394 9.2e-40 167.5 127 62.2
Medtr1g028310 Medicago truncatula HOM05D004312 ORTHO05D005394 9.2e-40 167.5 127 60.6
Potri.001G417300 Populus trichocarpa HOM05D004312 ORTHO05D005394 9.2e-40 167.5 127 61.4
RcHm_v2.0_Chr5g0037411 Rosa chinensis HOM05D004312 ORTHO05D005394 9.2e-40 167.5 127 63.8
CDE05G1308 Ceratophyllum demersum HOM05D004312 ORTHO05D005394 1.2e-39 167.2 127 62.2
Glyma.10G022000 Glycine max HOM05D004312 ORTHO05D005394 1.2e-39 167.2 127 60.6
SalBow3G2463 Salvia bowleyana HOM05D004312 ORTHO05D005394 1.2e-39 167.2 126 62.7
Atru.chr2.3209 Acer truncatum HOM05D004312 ORTHO05D005394 1.6e-39 166.8 126 62.7
Psat6g038960 Pisum sativum HOM05D004312 ORTHO05D005394 2.1e-39 166.4 127 61.4
THA.LOC104825403 Tarenaya hassleriana HOM05D004312 ORTHO05D005394 2.1e-39 166.4 126 61.1
Cpa.g.sc97.70 Carica papaya HOM05D004312 ORTHO05D005394 2.7e-39 166.0 124 62.1
Nn1g06998 Nelumbo nucifera HOM05D004312 ORTHO05D005394 3.5e-39 165.6 127 60.6
HPP92_002196 Vanilla planifolia HOM05D004312 ORTHO05D005394 4.6e-39 165.2 125 61.6
Hund23308 Selenicereus undatus HOM05D004312 ORTHO05D005394 1.0e-38 164.1 127 62.2
Haze_09609 Corylus avellana HOM05D004312 ORTHO05D005394 1.3e-38 163.7 130 61.5
QL08p013465 Quercus lobata HOM05D004312 ORTHO05D005394 1.3e-38 163.7 127 59.8
QL08p013781 Quercus lobata HOM05D004312 ORTHO05D005394 1.3e-38 163.7 127 59.8
Lalb_Chr14g0366111 Lupinus albus HOM05D004312 ORTHO05D005394 1.7e-38 163.3 127 59.8
TWI39G0013 Tripterygium wilfordii HOM05D004312 ORTHO05D005394 1.7e-38 163.3 128 60.9
Sabra16G0283500 Salix brachista HOM05D004312 ORTHO05D005394 3.9e-38 162.2 133 59.4
Lj3g0015514 Lotus japonicus HOM05D004312 ORTHO05D005394 5.1e-38 161.8 127 59.8
Phvul.005G091500 Phaseolus vulgaris HOM05D004312 ORTHO05D005394 5.1e-38 161.8 127 59.8
vmacro09746 Vaccinium macrocarpon HOM05D004312 ORTHO05D005394 1.1e-37 160.6 158 53.8
RhsimUnG0253200 Rhododendron simsii HOM05D004312 ORTHO05D005394 3.3e-37 159.1 112 68.8
PSO541G5632 Papaver somniferum HOM05D004312 ORTHO05D005394 1.2e-36 157.1 129 58.9
Aqoxy6G01703 Aquilegia oxysepala HOM05D004312 ORTHO05D005394 2.1e-36 156.4 129 56.6
ATR0073G014 Amborella trichopoda HOM05D004312 ORTHO05D005394 2.8e-36 156.0 129 56.6
Glyma.13G287200 Glycine max HOM05D004312 ORTHO05D005394 3.6e-36 155.6 125 60.8
Lalb_Chr14g0366131 Lupinus albus HOM05D004312 ORTHO05D005394 3.6e-36 155.6 127 58.3
PSO675G7739 Papaver somniferum HOM05D004312 ORTHO05D005394 4.7e-36 155.2 129 58.1
Aa31LG8G7480 Aethionema arabicum HOM05D004312 ORTHO05D005394 6.2e-36 154.8 126 56.3
PSO339G5963 Papaver somniferum HOM05D004312 ORTHO05D005394 2.3e-35 152.9 127 59.1
Thhalv10020971m.g Eutrema salsugineum HOM05D004312 ORTHO05D005394 3.1e-35 152.5 126 54.0
Glyma.12G214400 Glycine max HOM05D004312 ORTHO05D005394 5.2e-35 151.8 115 63.5
Mapoly0006s0078 Marchantia polymorpha HOM05D004312 ORTHO05D005394 5.2e-35 151.8 118 57.6
EL10Ac4g07972 Beta vulgaris HOM05D004312 ORTHO05D005394 6.8e-35 151.4 149 53.0
Carub.0003s2070 Capsella rubella HOM05D004312 ORTHO05D005394 6.8e-35 151.4 126 54.0
CARHR096560 Cardamine hirsuta HOM05D004312 ORTHO05D005394 1.5e-34 150.2 126 52.4
BcaC09g49015 Brassica carinata HOM05D004312 ORTHO05D005394 2.0e-34 149.8 126 53.2
A01p34090 Brassica napus HOM05D004312 ORTHO05D005394 2.0e-34 149.8 126 53.2
BolC1t04310H Brassica oleracea HOM05D004312 ORTHO05D005394 2.0e-34 149.8 126 53.2
BraA01t03513Z Brassica rapa HOM05D004312 ORTHO05D005394 2.0e-34 149.8 126 53.2
PSO384G4488 Papaver somniferum HOM05D004312 ORTHO05D005394 2.0e-34 149.8 123 57.7
AT3G20740 Arabidopsis thaliana HOM05D004312 ORTHO05D005394 3.4e-34 149.1 126 52.4
Sp3g18760 Schrenkiella parvula HOM05D004312 ORTHO05D005394 3.4e-34 149.1 126 53.2
AL3G34660 Arabidopsis lyrata HOM05D004312 ORTHO05D005394 4.4e-34 148.7 126 52.4
SEGI_02518 Sequoiadendron giganteum HOM05D004312 ORTHO05D005394 5.8e-34 148.3 120 55.8
BcaB04g20634 Brassica carinata HOM05D004312 ORTHO05D005394 7.6e-34 147.9 126 52.4
C01p43500 Brassica napus HOM05D004312 ORTHO05D005394 1.3e-33 147.1 126 52.4
COL.COLO4_09570 Corchorus olitorius HOM05D004312 ORTHO05D005394 2.2e-33 146.4 127 58.3
SMO347G0342 Selaginella moellendorffii HOM05D004312 ORTHO05D005394 6.4e-33 144.8 129 53.5
FAN21G3328 Fragaria x ananassa HOM05D004312 ORTHO05D005394 8.4e-33 144.4 176 46.0
BcaB06g26144 Brassica carinata HOM05D004312 ORTHO05D005394 1.6e-31 140.2 126 47.6
Os08g0137100 Oryza sativa ssp. japonica HOM05D004312 ORTHO05D005394 4.6e-31 138.7 125 53.6
Zm00001eb416950 Zea mays HOM05D004312 ORTHO05D005394 1.7e-30 136.7 125 53.6
Os08g0137250 Oryza sativa ssp. japonica HOM05D004312 ORTHO05D005394 2.3e-30 136.3 123 53.7
DCAR_006577 Daucus carota HOM05D004312 ORTHO05D005394 5.1e-30 135.2 135 50.4
AagrBONN_evm.TU.Sc2ySwM_117.25 Anthoceros agrestis HOM05D004312 ORTHO05D005394 6.6e-30 134.8 123 50.4
Pp3c24_1010 Physcomitrium patens HOM05D004312 ORTHO05D005394 2.5e-29 132.9 130 50.0
BcaC05g28288 Brassica carinata HOM05D004312 ORTHO05D005394 7.3e-29 131.3 126 46.0
C05p43470 Brassica napus HOM05D004312 ORTHO05D005394 7.3e-29 131.3 126 46.0
BolC5t33070H Brassica oleracea HOM05D004312 ORTHO05D005394 7.3e-29 131.3 126 46.0
A05p28070 Brassica napus HOM05D004312 ORTHO05D005394 1.2e-28 130.6 126 46.8
BraA05t21689Z Brassica rapa HOM05D004312 ORTHO05D005394 1.2e-28 130.6 126 46.8
A05p28030 Brassica napus HOM05D004312 ORTHO05D005394 1.8e-27 126.7 126 45.2
BraA05t21685Z Brassica rapa HOM05D004312 ORTHO05D005394 1.8e-27 126.7 126 45.2
BolC5t33065H Brassica oleracea HOM05D004312 ORTHO05D005394 2.0e-26 123.2 126 44.4
BcaC05g28285 Brassica carinata HOM05D004312 ORTHO05D005394 4.4e-26 122.1 126 43.7
Zm00001eb173090 Zea mays HOM05D004312 ORTHO05D005394 1.4e-24 117.1 125 47.2
BcaB06g26146 Brassica carinata HOM05D004312 ORTHO05D005394 7.1e-24 114.8 124 41.1
BcaC05g28287 Brassica carinata HOM05D004312 ORTHO05D005394 9.3e-24 114.4 122 43.4
A05p28060 Brassica napus HOM05D004312 ORTHO05D005394 4.6e-23 112.1 122 42.6
Hma1.2p1_1549F.1_g290070 Hydrangea macrophylla HOM05D004312 ORTHO05D005394 8.7e-22 107.8 76 65.8
PRCOL_00001232 Prasinoderma coloniale HOM05D004312 ORTHO05D005394 7.1e-16 88.2 124 41.1
Actinidia10705 Actinidia chinensis HOM05D004312 ORTHO05D005394 9.3e-16 87.8 59 67.8
CBR_g21046 Chara braunii HOM05D004312 ORTHO05D005394 2.5e-13 79.7 70 51.4
CAN.G337.148 Capsicum annuum HOM05D004312 ORTHO05D005394 3.6e-12 75.9 65 56.9
C05p43330 Brassica napus HOM05D004312 ORTHO05D005394 1.1e-11 74.3 103 36.9
Peaxi162Scf01086g00145 Petunia axillaris HOM05D004312 ORTHO05D005394 1.1e-11 74.3 57 57.9
Aa31LG8G7490 Aethionema arabicum HOM05D004312 ORTHO05D005394 1.4e-11 73.9 57 57.9
Phvul.007G166700 Phaseolus vulgaris HOM05D004312 ORTHO05D005394 1.4e-11 73.9 55 60.0
VMungo0251G2959 Vigna mungo HOM05D004312 ORTHO05D005394 1.4e-11 73.9 67 50.7
Peaxi162Scf01086g00127 Petunia axillaris HOM05D004312 ORTHO05D005394 5.3e-11 72.0 56 60.7
MCO04G208 Micromonas commoda HOM05D004312 ORTHO05D005394 6.9e-11 71.6 112 31.2
MCO04G236 Micromonas commoda HOM05D004312 ORTHO05D005394 6.9e-11 71.6 112 31.2
Oeu062615.1 Olea europaea HOM05D004312 ORTHO05D005394 6.9e-11 71.6 50 66.0
CsaV3_UNG229030 Cucumis sativus L. HOM05D004312 ORTHO05D005394 1.5e-10 70.5 50 64.0
BraA05t21687Z Brassica rapa HOM05D004312 ORTHO05D005394 3.4e-10 69.3 72 47.2
C06p10310 Brassica napus HOM05D004312 ORTHO05D026447 4.2e-08 62.4 55 49.1
BolC5t33069H Brassica oleracea HOM05D004312 ORTHO05D005394 9.3e-08 61.2 56 46.4
BolC6t36105H Brassica oleracea HOM05D004312 ORTHO05D026447 2.1e-07 60.1 52 50.0
Haze_27219 Corylus avellana HOM05D004312 ORTHO05D005394 6.0e-07 58.5 123 35.0
C05p43450 Brassica napus HOM05D004312 ORTHO05D005394 1.0e-06 57.8 56 44.6


User provided reference genes

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