Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 4.8e-86 321.6 229 100.0
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 4.5e-84 315.1 229 97.8
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 1.7e-78 296.6 232 82.3
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 2.5e-74 282.7 229 80.8
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 1.2e-73 280.4 229 74.7
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 2.1e-73 279.6 271 74.9
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 2.1e-73 279.6 229 65.1
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 2.7e-73 279.3 229 70.3
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.7e-73 278.5 231 70.1
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.7e-73 278.5 231 70.1
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 6.1e-73 278.1 230 70.4
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 6.1e-73 278.1 229 69.9
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 1.0e-72 277.3 229 66.4
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 5.2e-72 275.0 246 64.6
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 6.7e-72 274.6 229 70.3
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 6.7e-72 274.6 229 70.3
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 1.1e-71 273.9 231 74.0
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 4.4e-71 271.9 230 69.1
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 9.7e-71 270.8 231 74.0
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 9.7e-71 270.8 230 67.0
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 9.7e-71 270.8 229 74.2
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 9.7e-71 270.8 231 81.4
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 2.2e-70 269.6 231 72.3
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 2.2e-70 269.6 229 74.7
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 2.2e-70 269.6 229 64.6
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 2.2e-70 269.6 229 71.6
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 2.8e-70 269.2 230 78.3
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 2.8e-70 269.2 229 72.1
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 2.8e-70 269.2 229 70.3
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 4.8e-70 268.5 229 73.8
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 4.8e-70 268.5 229 66.4
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 6.3e-70 268.1 230 70.9
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 6.3e-70 268.1 231 68.8
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 8.2e-70 267.7 230 66.5
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 8.2e-70 267.7 229 86.0
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 8.2e-70 267.7 229 86.0
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.1e-69 267.3 234 76.1
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 1.4e-69 266.9 229 64.6
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.8e-69 266.5 232 72.8
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 1.8e-69 266.5 230 72.2
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.8e-69 266.5 229 85.6
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 2.4e-69 266.2 233 68.2
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.4e-69 266.2 229 76.9
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 3.1e-69 265.8 230 70.4
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 3.1e-69 265.8 235 68.1
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 3.1e-69 265.8 230 67.0
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 4.1e-69 265.4 231 63.2
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 5.3e-69 265.0 230 67.0
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 5.3e-69 265.0 231 65.8
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 7.0e-69 264.6 231 69.7
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 9.1e-69 264.2 230 69.6
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 9.1e-69 264.2 232 69.8
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.2e-68 263.8 232 72.0
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 1.6e-68 263.5 229 65.9
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.6e-68 263.5 230 68.3
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.6e-68 263.5 231 71.9
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 2.0e-68 263.1 230 68.7
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 2.0e-68 263.1 231 69.3
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 2.0e-68 263.1 229 70.3
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.0e-68 263.1 232 63.8
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 2.0e-68 263.1 229 68.1
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 2.0e-68 263.1 229 64.6
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.6e-68 262.7 229 85.2
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 2.6e-68 262.7 230 76.1
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.6e-68 262.7 231 69.3
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 3.5e-68 262.3 230 76.5
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 3.5e-68 262.3 229 78.2
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 3.5e-68 262.3 233 79.0
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 4.5e-68 261.9 232 63.8
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 4.5e-68 261.9 230 72.6
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 4.5e-68 261.9 230 71.3
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 4.5e-68 261.9 234 68.8
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 5.9e-68 261.5 229 76.9
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 7.7e-68 261.2 233 76.8
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 1.0e-67 260.8 230 70.0
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 1.3e-67 260.4 231 66.2
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 1.7e-67 260.0 230 66.1
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.7e-67 260.0 231 71.4
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.2e-67 259.6 230 70.0
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 8.5e-67 257.7 230 71.3
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 8.5e-67 257.7 234 77.8
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 8.5e-67 257.7 234 77.8
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 1.1e-66 257.3 231 65.4
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 1.1e-66 257.3 243 65.8
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.1e-66 257.3 235 69.4
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 1.5e-66 256.9 231 64.9
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 1.5e-66 256.9 231 68.8
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 1.5e-66 256.9 231 73.2
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 1.5e-66 256.9 234 70.5
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 4.2e-66 255.4 229 82.5
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.2e-66 254.6 234 69.2
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 9.4e-66 254.2 233 66.5
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 9.4e-66 254.2 232 63.8
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 1.2e-65 253.8 233 68.7
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 1.2e-65 253.8 231 65.8
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 1.6e-65 253.4 232 65.1
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 1.6e-65 253.4 232 65.1
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 2.7e-65 252.7 232 64.7
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 2.7e-65 252.7 232 65.1
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 3.6e-65 252.3 231 64.5
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.6e-65 252.3 233 68.2
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.6e-65 252.3 233 65.2
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 4.7e-65 251.9 233 65.7
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 4.7e-65 251.9 233 65.7
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.1e-65 251.5 234 68.8
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 8.0e-65 251.1 225 73.8
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 1.0e-64 250.8 231 74.0
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 1.0e-64 250.8 232 66.8
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 1.0e-64 250.8 232 65.1
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 1.4e-64 250.4 232 64.2
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.4e-64 250.4 284 55.6
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.8e-64 250.0 231 63.6
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 2.3e-64 249.6 232 65.5
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 2.3e-64 249.6 232 65.5
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 4.0e-64 248.8 237 71.7
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 6.8e-64 248.1 232 63.4
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 1.5e-63 246.9 232 62.9
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 2.0e-63 246.5 230 64.3
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 2.6e-63 246.1 232 64.2
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 2.6e-63 246.1 232 64.2
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 3.4e-63 245.7 229 65.1
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 4.4e-63 245.4 232 64.2
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 1.7e-62 243.4 232 69.0
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 1.8e-61 240.0 232 62.9
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 4.1e-61 238.8 232 73.3
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 2.0e-60 236.5 232 62.9
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.7e-60 236.1 229 59.8
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 4.5e-60 235.3 232 68.1
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 1.7e-59 233.4 230 63.5
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 3.2e-58 229.2 251 52.2
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.1e-57 226.5 217 69.1
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 6.8e-56 221.5 233 71.2
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 2.2e-54 216.5 230 56.5
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 1.8e-53 213.4 233 60.9
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 5.4e-53 211.8 232 59.1
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 1.5e-50 203.8 229 56.8
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.5e-50 203.8 252 65.5
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 2.5e-50 203.0 231 61.0
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 3.5e-44 182.6 237 58.6
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 4.5e-44 182.2 113 82.3
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 5.6e-42 175.3 188 60.6
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 3.6e-41 172.6 113 80.5
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.0e-40 171.0 113 80.5
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.8e-40 170.2 113 80.5
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.3e-40 169.9 113 75.2
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 3.1e-40 169.5 113 75.2
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 1.5e-39 167.2 113 73.5
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.6e-39 166.4 113 78.8
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 3.4e-39 166.0 125 68.0
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.8e-39 165.2 229 51.1
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.2e-36 157.5 187 62.6
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 7.3e-34 148.3 234 49.1
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 1.6e-33 147.1 239 47.3
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 4.0e-32 142.5 114 69.3
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 4.9e-30 135.6 155 69.7
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.6e-28 130.6 67 92.5
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 8.6e-27 124.8 67 88.1
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.1e-26 124.4 67 89.6
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 2.5e-26 123.2 67 86.6
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.7e-25 119.0 151 67.5
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 1.5e-23 114.0 68 80.9
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 2.0e-23 113.6 137 59.9
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 4.4e-23 112.5 68 80.9
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 3.0e-19 99.8 225 34.2
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 5.1e-19 99.0 69 69.6
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 8.6e-19 98.2 65 72.3
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 2.1e-17 93.6 237 38.4
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 1.1e-16 91.3 60 73.3
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 3.1e-16 89.7 66 66.7
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 6.8e-16 88.6 44 95.5
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 1.5e-15 87.4 56 78.6
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 3.9e-11 72.8 66 62.1
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 3.4e-07 59.7 44 59.1
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 1.7e-06 57.4 55 49.1


User provided reference genes

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