Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 1.2e-135 486.5 240 100.0
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 1.5e-101 373.2 219 83.1
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 3.6e-100 368.6 236 73.7
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 1.4e-99 366.7 227 75.3
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 2.3e-99 365.9 232 75.0
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 2.3e-99 365.9 236 73.3
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 5.7e-98 361.3 221 76.0
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 9.8e-98 360.5 238 71.8
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 1.3e-97 360.1 236 72.9
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 1.3e-97 360.1 224 75.9
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.7e-97 359.8 235 71.9
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 4.9e-97 358.2 235 71.9
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 1.8e-96 356.3 238 70.2
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 2.4e-96 355.9 241 71.0
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 5.4e-96 354.8 238 69.7
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 5.4e-96 354.8 237 69.6
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 1.6e-95 353.2 223 73.5
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 2.0e-95 352.8 242 70.7
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 2.7e-95 352.4 221 75.6
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 4.5e-95 351.7 225 73.3
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 7.8e-95 350.9 221 74.2
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 2.9e-94 349.0 224 71.0
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 2.9e-94 349.0 227 69.6
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 3.8e-94 348.6 232 69.4
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 1.5e-93 346.7 228 68.9
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 1.0e-91 340.5 224 71.4
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 1.4e-91 340.1 230 72.2
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 2.3e-91 339.3 221 74.2
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 6.8e-91 337.8 228 69.7
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 6.8e-91 337.8 228 69.7
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 6.8e-91 337.8 225 72.0
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 8.9e-91 337.4 235 68.1
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 1.3e-89 333.6 238 66.0
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 1.3e-89 333.6 238 66.0
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 1.3e-89 333.6 230 70.0
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 1.7e-89 333.2 228 66.7
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 6.4e-89 331.3 229 67.7
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 8.3e-89 330.9 228 69.3
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 1.1e-88 330.5 228 69.3
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 1.1e-88 330.5 244 63.9
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 1.1e-88 330.5 237 66.7
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 2.4e-88 329.3 225 68.9
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 5.4e-88 328.2 224 69.6
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 5.4e-88 328.2 238 66.0
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 2.0e-87 326.2 224 68.3
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 2.0e-87 326.2 227 66.5
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 7.8e-87 324.3 213 72.8
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 1.7e-86 323.2 224 66.1
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 2.3e-86 322.8 226 67.3
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 8.6e-86 320.9 228 66.2
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 8.6e-86 320.9 228 65.4
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 8.6e-86 320.9 228 63.6
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 1.5e-85 320.1 228 66.2
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 3.3e-85 318.9 224 67.9
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 4.3e-85 318.5 224 67.9
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 9.5e-85 317.4 228 65.4
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 2.8e-84 315.8 230 65.2
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 2.8e-84 315.8 228 64.5
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 3.6e-84 315.5 229 66.8
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 8.0e-84 314.3 239 61.9
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 8.0e-84 314.3 236 66.5
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 1.4e-83 313.5 228 63.6
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 2.3e-83 312.8 231 61.9
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 3.1e-83 312.4 221 67.9
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 6.8e-83 311.2 230 64.3
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 8.9e-83 310.8 224 66.1
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 8.9e-83 310.8 228 62.7
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 1.5e-82 310.1 239 61.9
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 4.4e-82 308.5 251 59.8
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 5.8e-82 308.1 251 58.6
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 7.5e-82 307.8 231 62.8
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 7.5e-82 307.8 243 59.7
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 9.8e-82 307.4 224 64.7
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 1.7e-81 306.6 224 64.7
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 2.9e-81 305.8 235 63.0
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 2.9e-81 305.8 277 56.3
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 2.9e-81 305.8 264 60.6
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 8.3e-81 304.3 238 64.7
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 7.0e-80 301.2 231 60.2
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 3.9e-78 295.4 246 61.0
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 1.9e-77 293.1 166 83.1
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 1.9e-77 293.1 228 61.8
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 9.5e-77 290.8 222 66.2
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 8.1e-76 287.7 224 60.3
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 1.8e-75 286.6 210 65.7
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 8.9e-75 284.3 212 64.6
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 2.6e-74 282.7 219 58.4
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 9.8e-74 280.8 219 58.4
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 1.3e-73 280.4 179 70.9
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 5.4e-72 275.0 232 58.6
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 3.9e-70 268.9 215 59.1
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 3.9e-70 268.9 215 59.1
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 7.3e-69 264.6 219 58.4
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 1.4e-67 260.4 179 65.9
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 2.3e-67 259.6 184 63.6
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 5.2e-67 258.5 220 60.5
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 6.8e-67 258.1 220 61.4
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 1.5e-66 256.9 206 58.7
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 4.4e-66 255.4 286 50.7
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 1.3e-65 253.8 237 56.1
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 2.9e-65 252.7 261 53.3
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 9.2e-64 247.7 197 60.4
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 8.6e-62 241.1 183 64.5
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 1.5e-58 230.3 152 69.7
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 2.2e-57 226.5 159 69.2
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 2.8e-52 209.5 135 67.4
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 1.4e-51 207.2 228 49.6
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 3.4e-50 202.6 218 49.1
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 2.9e-49 199.5 161 64.0
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 7.4e-45 184.9 119 70.6
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 2.8e-44 183.0 124 67.7
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 9.9e-42 174.5 170 50.6
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 1.2e-39 167.5 123 65.0
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 1.5e-37 160.6 150 53.3
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 1.2e-34 151.0 130 55.4
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 2.6e-34 149.8 219 37.0
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 8.2e-28 128.3 213 32.9
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 2.9e-25 119.8 95 57.9
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 1.7e-20 104.0 77 61.0
arahy.Tifrunner.gnm1.ann1.D8HQTE Arachis hypogaea HOM05D006697 ORTHO05D008161 2.7e-15 86.7 65 56.9
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 3.1e-11 73.2 43 74.4
Medtr2g451120 Medicago truncatula HOM05D006697 ORTHO05D008161 5.3e-11 72.4 90 42.2
FAN20G1527 Fragaria x ananassa HOM05D006697 ORTHO05D205377 6.7e-06 55.5 76 43.4


User provided reference genes

Program Settings