Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0226641 Helianthus annuus HOM05D000196 ORTHO05D001288 2.6e-68 261.9 132 100.0
HanXRQChr12g0374161 Helianthus annuus HOM05D000196 ORTHO05D001288 1.0e-43 180.3 236 48.3
HanXRQChr01g0021291 Helianthus annuus HOM05D000196 ORTHO05D001288 5.9e-28 127.9 181 49.2
Lsat_1_v5_gn_9_24661 Lactuca sativa HOM05D000196 ORTHO05D001288 2.1e-25 119.4 242 38.0
ECA247G3981 Erigeron canadensis HOM05D000196 ORTHO05D001288 7.9e-25 117.5 257 37.4
GSVIVG01024916001 Vitis vinifera HOM05D000196 ORTHO05D001288 4.4e-23 111.7 212 37.7
DCAR_015637 Daucus carota HOM05D000196 ORTHO05D001288 1.7e-22 109.8 209 37.3
Lj2P1068T26 Lonicera japonica HOM05D000196 ORTHO05D001288 1.7e-22 109.8 206 37.9
Lsat_1_v5_gn_8_72921 Lactuca sativa HOM05D000196 ORTHO05D001288 4.8e-22 108.2 101 57.4
arahy.Tifrunner.gnm1.ann1.7BR3CD Arachis hypogaea HOM05D000196 ORTHO05D001288 1.4e-21 106.7 227 35.7
Manes.02G129800 Manihot esculenta HOM05D000196 ORTHO05D001288 2.4e-21 105.9 105 53.3
HanXRQChr01g0027091 Helianthus annuus HOM05D000196 ORTHO05D001288 5.3e-21 104.8 257 34.2
CSS0003719 Camellia sinensis var. sinensis HOM05D000196 ORTHO05D001288 2.0e-20 102.8 239 33.9
Potri.001G243600 Populus trichocarpa HOM05D000196 ORTHO05D001288 7.7e-20 100.9 100 54.0
CSS0034150 Camellia sinensis var. sinensis HOM05D000196 ORTHO05D001288 1.0e-19 100.5 228 35.1
Peaxi162Scf00265g00015 Petunia axillaris HOM05D000196 ORTHO05D001288 1.3e-19 100.1 215 36.7
vmacro03037 Vaccinium macrocarpon HOM05D000196 ORTHO05D001288 1.3e-19 100.1 218 35.8
HanXRQChr06g0179041 Helianthus annuus HOM05D000196 ORTHO05D001288 3.8e-19 98.6 101 52.5
Cpa.g.sc81.106 Carica papaya HOM05D000196 ORTHO05D001288 1.1e-18 97.1 119 49.6
Rhsim01G0231100 Rhododendron simsii HOM05D000196 ORTHO05D001288 1.4e-18 96.7 188 38.3
Lsat_1_v5_gn_5_169461 Lactuca sativa HOM05D000196 ORTHO05D001288 1.9e-18 96.3 96 55.2
arahy.Tifrunner.gnm1.ann1.893SZW Arachis hypogaea HOM05D000196 ORTHO05D001288 2.5e-18 95.9 237 32.5
vmacro14553 Vaccinium macrocarpon HOM05D000196 ORTHO05D001288 4.2e-18 95.1 224 33.9
Manes.01G170000 Manihot esculenta HOM05D000196 ORTHO05D001288 7.2e-18 94.4 239 30.1
MD11G1095900 Malus domestica HOM05D000196 ORTHO05D001288 9.4e-18 94.0 118 44.9
Atru.chr3.3961 Acer truncatum HOM05D000196 ORTHO05D001288 1.6e-17 93.2 116 45.7
Potri.009G035000 Populus trichocarpa HOM05D000196 ORTHO05D001288 1.6e-17 93.2 101 51.5
VMungo1127G1858 Vigna mungo HOM05D000196 ORTHO05D001288 2.7e-17 92.4 229 33.2
Nitab4.5_0004892g0040 Nicotiana tabacum HOM05D000196 ORTHO05D001288 3.6e-17 92.0 229 33.6
ClCG03G001320 Citrullus lanatus HOM05D000196 ORTHO05D001288 4.7e-17 91.7 119 46.2
Hma1.2p1_0615F.1_g189720 Hydrangea macrophylla HOM05D000196 ORTHO05D001288 4.7e-17 91.7 246 33.7
PGR119G1281 Punica granatum HOM05D000196 ORTHO05D001288 4.7e-17 91.7 242 32.6
CsaV3_1G034500 Cucumis sativus L. HOM05D000196 ORTHO05D001288 6.1e-17 91.3 121 45.5
Lj3g0001786 Lotus japonicus HOM05D000196 ORTHO05D001288 8.0e-17 90.9 227 33.9
Rhsim13G0077900 Rhododendron simsii HOM05D000196 ORTHO05D001288 8.0e-17 90.9 218 34.4
Lj1P147T66 Lonicera japonica HOM05D000196 ORTHO05D001288 1.0e-16 90.5 211 34.1
Psat7g211480 Pisum sativum HOM05D000196 ORTHO05D001288 1.0e-16 90.5 223 34.1
RcHm_v2.0_Chr5g0066111 Rosa chinensis HOM05D000196 ORTHO05D001288 1.0e-16 90.5 251 30.3
Nitab4.5_0000102g0300 Nicotiana tabacum HOM05D000196 ORTHO05D001288 1.4e-16 90.1 229 32.8
Sabra09G0025000 Salix brachista HOM05D000196 ORTHO05D001288 1.4e-16 90.1 101 52.5
Nn2g13421 Nelumbo nucifera HOM05D000196 ORTHO05D001288 1.8e-16 89.7 134 43.3
Prupe.6G071400 Prunus persica HOM05D000196 ORTHO05D001288 1.8e-16 89.7 107 46.7
Ciclev10028658m.g Citrus clementina HOM05D000196 ORTHO05D001288 2.3e-16 89.4 104 49.0
Solyc06g005680.4 Solanum lycopersicum HOM05D000196 ORTHO05D001288 2.3e-16 89.4 235 32.8
CiPaw.13G090400 Carya illinoinensis HOM05D000196 ORTHO05D001288 3.9e-16 88.6 97 52.6
Phvul.011G062100 Phaseolus vulgaris HOM05D000196 ORTHO05D001288 3.9e-16 88.6 228 32.0
Sopen06g001660 Solanum pennellii HOM05D000196 ORTHO05D001288 3.9e-16 88.6 235 32.8
Glyma.12G060200 Glycine max HOM05D000196 ORTHO05D001288 5.2e-16 88.2 75 56.0
THA.LOC104810761 Tarenaya hassleriana HOM05D000196 ORTHO05D001288 5.2e-16 88.2 77 58.4
Actinidia34423 Actinidia chinensis HOM05D000196 ORTHO05D001288 6.7e-16 87.8 100 52.0
Ca_20620_v3 Cicer arietinum L. HOM05D000196 ORTHO05D001288 6.7e-16 87.8 219 33.3
Cc01_g13250 Coffea canephora HOM05D000196 ORTHO05D001288 6.7e-16 87.8 101 50.5
Dinv11593 Davidia involucrata HOM05D000196 ORTHO05D001288 6.7e-16 87.8 101 49.5
Dinv17037 Davidia involucrata HOM05D000196 ORTHO05D001288 6.7e-16 87.8 240 32.1
Dinv42983 Davidia involucrata HOM05D000196 ORTHO05D001288 6.7e-16 87.8 240 32.1
Dinv43116 Davidia involucrata HOM05D000196 ORTHO05D001288 6.7e-16 87.8 240 32.1
Medtr4g064730 Medicago truncatula HOM05D000196 ORTHO05D001288 6.7e-16 87.8 226 31.0
Actinidia23922 Actinidia chinensis HOM05D000196 ORTHO05D001288 8.8e-16 87.4 100 53.0
Dinv34273 Davidia involucrata HOM05D000196 ORTHO05D001288 8.8e-16 87.4 100 47.0
FvH4_3g36890 Fragaria vesca HOM05D000196 ORTHO05D001288 8.8e-16 87.4 253 30.0
FAN21G2009 Fragaria x ananassa HOM05D000196 ORTHO05D001288 8.8e-16 87.4 244 30.7
CAN.G141.6 Capsicum annuum HOM05D000196 ORTHO05D001288 1.1e-15 87.0 230 32.2
FAN11G0260 Fragaria x ananassa HOM05D000196 ORTHO05D001288 1.1e-15 87.0 253 30.0
Glyma.11G136600 Glycine max HOM05D000196 ORTHO05D001288 1.1e-15 87.0 75 57.3
Aqoxy1G00885 Aquilegia oxysepala HOM05D000196 ORTHO05D001288 1.5e-15 86.7 97 50.5
MELO3C020611.2 Cucumis melo HOM05D000196 ORTHO05D001288 1.5e-15 86.7 122 43.4
FAN16G3506 Fragaria x ananassa HOM05D000196 ORTHO05D001288 1.5e-15 86.7 250 30.0
FAN25G3764 Fragaria x ananassa HOM05D000196 ORTHO05D001288 1.5e-15 86.7 250 29.6
TAR560G0008 Trochodendron aralioides HOM05D000196 ORTHO05D001288 5.7e-15 84.7 243 32.1
TAR633G0513 Trochodendron aralioides HOM05D000196 ORTHO05D001288 5.7e-15 84.7 101 48.5
HanXRQChr04g0109251 Helianthus annuus HOM05D000196 ORTHO05D001288 7.4e-15 84.3 79 55.7
Nitab4.5_0000463g0190 Nicotiana tabacum HOM05D000196 ORTHO05D001288 7.4e-15 84.3 96 47.9
Nn2g11179 Nelumbo nucifera HOM05D000196 ORTHO05D001288 1.3e-14 83.6 242 30.2
Sed0001074 Sechium edule HOM05D000196 ORTHO05D001288 1.3e-14 83.6 104 49.0
Cfa011539 Carpinus fangiana HOM05D000196 ORTHO05D001288 1.7e-14 83.2 100 49.0
DCAR_005950 Daucus carota HOM05D000196 ORTHO05D001288 1.7e-14 83.2 74 56.8
MD03G1086800 Malus domestica HOM05D000196 ORTHO05D001288 1.7e-14 83.2 104 48.1
Oeu004174.1 Olea europaea HOM05D000196 ORTHO05D001288 1.7e-14 83.2 131 42.0
Sc21g0005990 Simmondsia chinensis HOM05D000196 ORTHO05D001288 1.7e-14 83.2 116 46.6
TAR623G1059 Trochodendron aralioides HOM05D000196 ORTHO05D001288 1.7e-14 83.2 243 32.1
Sed0006622 Sechium edule HOM05D000196 ORTHO05D001288 2.2e-14 82.8 118 43.2
Sopen06g032760 Solanum pennellii HOM05D000196 ORTHO05D001288 2.2e-14 82.8 100 45.0
PGSC0003DMG400002144 Solanum tuberosum HOM05D000196 ORTHO05D001288 2.2e-14 82.8 236 32.6
ATR0559G174 Amborella trichopoda HOM05D000196 ORTHO05D001288 2.8e-14 82.4 219 33.8
PSO339G1776 Papaver somniferum HOM05D000196 ORTHO05D001288 2.8e-14 82.4 231 31.6
Solyc06g076350.3 Solanum lycopersicum HOM05D000196 ORTHO05D001288 2.8e-14 82.4 100 45.0
Lalb_Chr22g0352471 Lupinus albus HOM05D000196 ORTHO05D001288 3.7e-14 82.0 228 32.0
MSTRG.21219 Avicennia marina HOM05D000196 ORTHO05D001288 4.8e-14 81.6 229 33.2
CARHR155170 Cardamine hirsuta HOM05D000196 ORTHO05D001288 4.8e-14 81.6 114 45.6
Nitab4.5_0006916g0030 Nicotiana tabacum HOM05D000196 ORTHO05D001288 4.8e-14 81.6 96 45.8
HanXRQChr05g0135231 Helianthus annuus HOM05D000196 ORTHO05D001288 6.3e-14 81.3 101 48.5
Sp5g15040 Schrenkiella parvula HOM05D000196 ORTHO05D001288 6.3e-14 81.3 75 57.3
SGA_v2.0_scaffold111G31535 Striga asiatica HOM05D000196 ORTHO05D001288 6.3e-14 81.3 210 33.3
Carub.0008s2024 Capsella rubella HOM05D000196 ORTHO05D001288 8.2e-14 80.9 84 53.6
Thhalv10002605m.g Eutrema salsugineum HOM05D000196 ORTHO05D001288 1.1e-13 80.5 75 54.7
PGSC0003DMG400030328 Solanum tuberosum HOM05D000196 ORTHO05D001288 1.1e-13 80.5 100 45.0
AT3G46640 Arabidopsis thaliana HOM05D000196 ORTHO05D001288 1.4e-13 80.1 75 56.0
Migut.D00884 Erythranthe guttata HOM05D000196 ORTHO05D001288 1.4e-13 80.1 231 32.9
AL8G36060 Arabidopsis lyrata HOM05D000196 ORTHO05D001288 1.8e-13 79.7 79 54.4
Carub.0005s1291 Capsella rubella HOM05D000196 ORTHO05D001288 2.4e-13 79.3 75 56.0
Gohir.A03G045000 Gossypium hirsutum HOM05D000196 ORTHO05D001288 2.4e-13 79.3 255 29.4
SGA_v2.0_scaffold54G19483 Striga asiatica HOM05D000196 ORTHO05D001288 2.4e-13 79.3 217 32.7
Oeu007655.1 Olea europaea HOM05D000196 ORTHO05D001288 3.1e-13 79.0 74 55.4
Sp6g21270 Schrenkiella parvula HOM05D000196 ORTHO05D001288 3.1e-13 79.0 111 43.2
AL5G25530 Arabidopsis lyrata HOM05D000196 ORTHO05D001288 4.1e-13 78.6 75 54.7
CARHR273030 Cardamine hirsuta HOM05D000196 ORTHO05D001288 4.1e-13 78.6 227 30.8
DCAR_018923 Daucus carota HOM05D000196 ORTHO05D001288 5.3e-13 78.2 100 48.0
Gohir.D03G122000 Gossypium hirsutum HOM05D000196 ORTHO05D001288 5.3e-13 78.2 93 46.2
BcaC01g01898 Brassica carinata HOM05D000196 ORTHO05D001288 7.0e-13 77.8 75 54.7
A06p20850 Brassica napus HOM05D000196 ORTHO05D001288 7.0e-13 77.8 75 54.7
C03p70830 Brassica napus HOM05D000196 ORTHO05D001288 7.0e-13 77.8 75 54.7
BolC3t19354H Brassica oleracea HOM05D000196 ORTHO05D001288 7.0e-13 77.8 75 54.7
Gohir.D07G104300 Gossypium hirsutum HOM05D000196 ORTHO05D001288 7.0e-13 77.8 94 43.6
Gorai.001G112200 Gossypium raimondii HOM05D000196 ORTHO05D001288 7.0e-13 77.8 94 43.6
HanXRQChr01g0008011 Helianthus annuus HOM05D000196 ORTHO05D001288 7.0e-13 77.8 178 35.4
Gohir.A07G100200 Gossypium hirsutum HOM05D000196 ORTHO05D001288 9.1e-13 77.4 94 42.6
BcaB02g10714 Brassica carinata HOM05D000196 ORTHO05D001288 1.2e-12 77.0 75 54.7
Aqoxy2G02287 Aquilegia oxysepala HOM05D000196 ORTHO05D001288 2.0e-12 76.3 80 52.5
BraA06t25163Z Brassica rapa HOM05D000196 ORTHO05D001288 2.0e-12 76.3 75 53.3
Duzib170G0972 Durio zibethinus HOM05D000196 ORTHO05D001288 2.0e-12 76.3 252 28.2
Gorai.009G097100 Gossypium raimondii HOM05D000196 ORTHO05D001288 2.0e-12 76.3 69 59.4
MBI14_g08027_MAGBIO Magnolia biondii HOM05D000196 ORTHO05D001288 3.5e-12 75.5 57 61.4
ECA248G1863 Erigeron canadensis HOM05D000196 ORTHO05D001288 5.9e-12 74.7 102 45.1
Lalb_Chr14g0372001 Lupinus albus HOM05D000196 ORTHO05D001288 5.9e-12 74.7 72 52.8
SHI05911 Sapria himalayana HOM05D000196 ORTHO05D001288 5.9e-12 74.7 77 48.1
Thecc.09G317000 Theobroma cacao HOM05D000196 ORTHO05D001288 7.7e-12 74.3 263 27.0
Gohir.D05G094100 Gossypium hirsutum HOM05D000196 ORTHO05D001288 1.0e-11 73.9 102 46.1
Gorai.003G129100 Gossypium raimondii HOM05D000196 ORTHO05D001288 1.0e-11 73.9 93 45.2
CDE09G0055 Ceratophyllum demersum HOM05D000196 ORTHO05D001288 1.3e-11 73.6 83 48.2
MBI05_g38474_MAGBIO Magnolia biondii HOM05D000196 ORTHO05D001288 1.3e-11 73.6 206 31.6
SalBow6G5625 Salvia bowleyana HOM05D000196 ORTHO05D001288 1.3e-11 73.6 224 31.2
Gohir.A05G093600 Gossypium hirsutum HOM05D000196 ORTHO05D001288 1.7e-11 73.2 103 45.6
Aa31LG4G15650 Aethionema arabicum HOM05D000196 ORTHO05D001288 2.2e-11 72.8 75 52.0
QL01p030461 Quercus lobata HOM05D000196 ORTHO05D001288 2.2e-11 72.8 59 59.3
SalBow1G8008 Salvia bowleyana HOM05D000196 ORTHO05D001288 2.2e-11 72.8 226 31.0
COL.COLO4_18566 Corchorus olitorius HOM05D000196 ORTHO05D001288 6.5e-11 71.2 253 26.9
Sabra16G0147900 Salix brachista HOM05D000196 ORTHO05D001288 1.1e-10 70.5 71 56.3
Eucgr.B02313 Eucalyptus grandis HOM05D000196 ORTHO05D001288 1.5e-10 70.1 84 46.4
BcaB05g23541 Brassica carinata HOM05D000196 ORTHO05D001288 1.9e-10 69.7 75 52.0
CDE02G4552 Ceratophyllum demersum HOM05D000196 ORTHO05D001288 1.9e-10 69.7 109 41.3
TAR636G0509 Trochodendron aralioides HOM05D000196 ORTHO05D001288 1.9e-10 69.7 98 41.8
CAN.G394.73 Capsicum annuum HOM05D000196 ORTHO05D001288 2.5e-10 69.3 78 51.3
SEGI_10072 Sequoiadendron giganteum HOM05D000196 ORTHO05D001288 3.2e-10 68.9 90 44.4
AT5G59570 Arabidopsis thaliana HOM05D000196 ORTHO05D001288 4.2e-10 68.6 84 48.8
BcaB01g00998 Brassica carinata HOM05D000196 ORTHO05D001288 1.2e-09 67.0 69 52.2
Os01g0971800 Oryza sativa ssp. japonica HOM05D000196 ORTHO05D001288 1.6e-09 66.6 201 30.3
BcaC09g49760 Brassica carinata HOM05D000196 ORTHO05D001288 3.6e-09 65.5 75 50.7
C01p33230 Brassica napus HOM05D000196 ORTHO05D001288 3.6e-09 65.5 75 50.7
BolC1t03259H Brassica oleracea HOM05D000196 ORTHO05D001288 3.6e-09 65.5 75 50.7
Sc12g0001280 Simmondsia chinensis HOM05D000196 ORTHO05D001288 3.6e-09 65.5 78 43.6
A01p26150 Brassica napus HOM05D000196 ORTHO05D001288 4.7e-09 65.1 75 49.3
MBI05_g35627_MAGBIO Magnolia biondii HOM05D000196 ORTHO05D001288 6.1e-09 64.7 181 30.9
unitig_46.g18413 Utricularia gibba HOM05D000196 ORTHO05D001288 6.1e-09 64.7 211 28.9
Zm00001eb362240 Zea mays HOM05D000196 ORTHO05D001288 6.1e-09 64.7 80 45.0
QL02p094444 Quercus lobata HOM05D027359 ORTHO05D001288 8.0e-09 64.3 73 43.8
QL12p005699 Quercus lobata HOM05D027359 ORTHO05D001288 8.0e-09 64.3 61 54.1
CDE04G1944 Ceratophyllum demersum HOM05D000196 ORTHO05D001288 1.4e-08 63.5 75 42.7
MELO3C025894.2 Cucumis melo HOM05D000196 ORTHO05D001288 1.4e-08 63.5 98 40.8
ClCG02G019950 Citrullus lanatus HOM05D000196 ORTHO05D001288 1.8e-08 63.2 65 50.8
CsaV3_6G016650 Cucumis sativus L. HOM05D000196 ORTHO05D001288 1.8e-08 63.2 98 40.8
CsaV3_7G009940 Cucumis sativus L. HOM05D000196 ORTHO05D001288 1.8e-08 63.2 98 40.8
QL04p002716 Quercus lobata HOM05D027359 ORTHO05D001288 1.8e-08 63.2 73 43.8
EL10Ac7g16056 Beta vulgaris HOM05D000196 ORTHO05D001288 4.0e-08 62.0 61 47.5
HPP92_021126 Vanilla planifolia HOM05D000196 ORTHO05D001288 5.2e-08 61.6 106 34.9
Zm00001eb139830 Zea mays HOM05D000196 ORTHO05D001288 5.2e-08 61.6 219 28.8
HPP92_019841 Vanilla planifolia HOM05D000196 ORTHO05D001288 6.7e-08 61.2 63 50.8
BraA01t02533Z Brassica rapa HOM05D000196 ORTHO05D001288 8.8e-08 60.8 65 53.8
Aa31LG1G11910 Aethionema arabicum HOM05D000196 ORTHO05D001288 1.5e-07 60.1 112 40.2
Ah.15g098560 Amaranthus hybridus HOM05D000196 ORTHO05D001288 2.0e-07 59.7 77 45.5
unitig_37.g12671 Utricularia gibba HOM05D000196 ORTHO05D001288 2.0e-07 59.7 96 38.5
Peaxi162Scf00481g00327 Petunia axillaris HOM05D000196 ORTHO05D001288 5.7e-07 58.2 61 47.5
Hund04927 Selenicereus undatus HOM05D000196 ORTHO05D001288 7.5e-07 57.8 60 43.3
Actinidia33775 Actinidia chinensis HOM05D000196 ORTHO05D001288 9.7e-07 57.4 34 79.4
CDE07G1166 Ceratophyllum demersum HOM05D000196 ORTHO05D001288 1.3e-06 57.0 162 30.9
Sc10g0001770 Simmondsia chinensis HOM05D000196 ORTHO05D001288 1.3e-06 57.0 57 50.9
SMO364G0170 Selaginella moellendorffii HOM05D000196 ORTHO05D001288 2.8e-06 55.8 187 29.9
Nn3g18771 Nelumbo nucifera HOM05D000196 ORTHO05D001288 3.7e-06 55.5 55 50.9
PSO063G0138 Papaver somniferum HOM05D000196 ORTHO05D001288 4.8e-06 55.1 76 46.1
Hund13787 Selenicereus undatus HOM05D000196 ORTHO05D001288 4.8e-06 55.1 58 48.3


User provided reference genes

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