Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 1.2e-91 339.7 167 100.0
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 2.8e-67 258.8 166 81.3
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.1e-63 246.9 166 75.9
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 1.6e-59 233.0 165 72.1
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 4.6e-54 214.9 169 67.5
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 3.5e-46 188.7 135 65.2
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 7.9e-46 187.6 162 56.2
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.0e-45 187.2 155 55.5
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.3e-45 186.8 129 66.7
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.8e-45 186.4 162 58.0
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 3.0e-45 185.7 157 54.1
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 6.7e-45 184.5 124 66.1
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 1.1e-44 183.7 161 55.3
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.9e-44 183.0 159 56.0
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 2.5e-44 182.6 130 66.2
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 3.3e-44 182.2 160 53.1
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 3.3e-44 182.2 136 58.8
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 4.3e-44 181.8 130 65.4
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 4.3e-44 181.8 160 53.8
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 7.4e-44 181.0 128 62.5
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 9.7e-44 180.6 142 60.6
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.3e-43 180.3 139 56.8
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 1.6e-43 179.9 130 63.1
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 2.8e-43 179.1 124 65.3
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 2.8e-43 179.1 161 55.9
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 3.7e-43 178.7 161 55.9
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.7e-43 178.7 161 54.7
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 3.7e-43 178.7 161 53.4
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 4.8e-43 178.3 136 61.0
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 4.8e-43 178.3 161 55.3
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 6.3e-43 177.9 168 51.8
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 8.2e-43 177.6 131 61.1
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 8.2e-43 177.6 172 52.3
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 1.1e-42 177.2 138 58.7
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.1e-42 177.2 161 52.8
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 1.4e-42 176.8 126 59.5
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.4e-42 176.8 126 59.5
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.4e-42 176.8 126 61.1
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.8e-42 176.4 161 54.0
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.8e-42 176.4 160 55.0
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 2.4e-42 176.0 124 63.7
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 2.4e-42 176.0 124 64.5
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 2.4e-42 176.0 122 64.8
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 2.4e-42 176.0 130 60.8
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.4e-42 176.0 122 63.9
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 4.1e-42 175.3 123 64.2
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 6.9e-42 174.5 119 62.2
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 6.9e-42 174.5 147 55.1
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 9.0e-42 174.1 128 59.4
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 2.6e-41 172.6 158 52.5
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 2.6e-41 172.6 126 61.9
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 2.6e-41 172.6 162 51.9
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 4.5e-41 171.8 169 51.5
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 4.5e-41 171.8 128 58.6
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.5e-41 171.8 128 58.6
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 4.5e-41 171.8 166 51.8
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 7.6e-41 171.0 119 61.3
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 7.6e-41 171.0 134 56.0
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 1.0e-40 170.6 162 51.9
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 1.3e-40 170.2 139 55.4
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 1.7e-40 169.9 124 62.9
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.2e-40 169.5 145 52.4
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.2e-40 169.5 145 52.4
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 3.8e-40 168.7 132 56.1
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 3.8e-40 168.7 160 52.5
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 5.0e-40 168.3 122 61.5
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 6.5e-40 167.9 158 51.9
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 8.5e-40 167.5 158 51.9
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 1.4e-39 166.8 166 53.0
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 1.4e-39 166.8 139 53.2
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.9e-39 166.4 122 59.0
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 3.2e-39 165.6 122 63.9
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 4.2e-39 165.2 114 61.4
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.2e-39 165.2 115 63.5
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.5e-39 164.9 161 51.6
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 9.3e-39 164.1 127 57.5
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 9.3e-39 164.1 126 58.7
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.2e-38 163.7 166 48.8
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.6e-38 163.3 131 57.3
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.6e-38 163.3 166 48.8
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.1e-38 162.9 167 49.1
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 2.7e-38 162.5 164 51.8
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.6e-38 162.2 166 49.4
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 3.6e-38 162.2 164 49.4
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 3.6e-38 162.2 162 50.0
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 3.6e-38 162.2 121 62.8
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 4.6e-38 161.8 120 59.2
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 4.6e-38 161.8 127 58.3
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.1e-38 161.4 118 59.3
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 6.1e-38 161.4 164 49.4
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 7.9e-38 161.0 165 49.1
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 1.0e-37 160.6 126 56.3
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 1.0e-37 160.6 126 56.3
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 1.0e-37 160.6 119 61.3
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 3.0e-37 159.1 124 57.3
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 5.1e-37 158.3 128 54.7
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 5.1e-37 158.3 128 54.7
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 5.1e-37 158.3 128 54.7
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 5.1e-37 158.3 128 54.7
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 5.1e-37 158.3 160 48.8
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 5.1e-37 158.3 125 56.0
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 8.8e-37 157.5 143 49.0
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 8.8e-37 157.5 143 49.0
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 8.8e-37 157.5 127 59.1
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 2.5e-36 156.0 166 48.8
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 2.5e-36 156.0 163 49.1
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.5e-36 156.0 114 62.3
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 3.3e-36 155.6 178 44.4
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 3.3e-36 155.6 119 58.0
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 5.7e-36 154.8 113 58.4
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 5.7e-36 154.8 126 54.0
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.7e-36 154.8 114 62.3
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.7e-36 154.8 114 59.6
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.4e-36 154.5 122 58.2
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 9.7e-36 154.1 170 48.2
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 9.7e-36 154.1 160 47.5
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 9.7e-36 154.1 167 46.1
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 4.8e-35 151.8 162 48.8
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 4.8e-35 151.8 162 48.8
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 4.8e-35 151.8 162 48.8
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 4.8e-35 151.8 120 57.5
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 6.3e-35 151.4 122 57.4
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 8.2e-35 151.0 142 51.4
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 8.2e-35 151.0 163 49.7
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 8.2e-35 151.0 159 50.9
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 3.1e-34 149.1 137 53.3
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 6.9e-34 147.9 121 55.4
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 1.2e-33 147.1 127 52.8
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 1.5e-33 146.7 120 56.7
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 2.6e-33 146.0 171 44.4
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 1.3e-32 143.7 150 49.3
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 5.5e-31 138.3 115 55.7
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.7e-30 136.0 109 56.0
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.4e-29 133.7 123 50.4
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.3e-29 132.9 131 53.4
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 6.7e-29 131.3 128 53.1
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 8.8e-29 131.0 125 49.6
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 1.5e-28 130.2 118 51.7
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 5.7e-28 128.3 167 40.1
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.3e-27 127.1 103 54.4
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 1.7e-27 126.7 145 45.5
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.2e-27 126.3 171 43.9
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 6.3e-27 124.8 124 48.4
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.0e-24 117.5 123 44.7
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 1.1e-23 114.0 112 45.5
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 4.2e-23 112.1 100 54.0
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 5.5e-23 111.7 116 46.6
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.0e-21 105.9 85 56.5
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 5.2e-21 105.1 110 47.3
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 8.8e-21 104.4 97 53.6
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 1.1e-20 104.0 109 47.7
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.5e-20 103.6 94 55.3
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 2.0e-20 103.2 118 44.1
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 1.3e-19 100.5 140 41.4
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 1.3e-19 100.5 140 41.4
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.7e-19 100.1 120 45.0
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 2.2e-19 99.8 123 43.1
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 6.3e-19 98.2 120 43.3
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 8.2e-19 97.8 111 41.4
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 1.1e-18 97.4 161 36.6
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.1e-18 94.4 77 57.1
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.6e-17 93.6 107 44.9
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.0e-16 90.9 121 41.3
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 6.5e-16 88.2 100 42.0
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 8.0e-14 81.3 53 64.2
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.4e-13 80.5 69 52.2
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.8e-13 80.1 77 51.9
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 1.2e-12 77.4 119 39.5
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 3.7e-11 72.4 67 53.7
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 7.7e-09 64.7 56 60.7


User provided reference genes

Program Settings