Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 6.8e-141 504.6 342 100.0
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.0e-99 367.9 342 84.2
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 7.7e-84 315.1 345 73.9
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 7.2e-82 308.5 350 72.9
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 1.2e-81 307.8 348 73.9
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 3.1e-77 293.1 345 72.5
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 1.2e-76 291.2 348 71.0
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 3.4e-76 289.7 346 72.0
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 3.4e-76 289.7 346 72.0
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 7.7e-76 288.5 343 71.4
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 1.0e-75 288.1 330 73.6
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 2.7e-73 280.0 346 69.9
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 1.0e-72 278.1 346 69.4
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.8e-72 277.3 301 78.7
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 3.9e-72 276.2 346 61.0
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 8.8e-72 275.0 328 73.5
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 1.1e-71 274.6 344 71.5
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 1.1e-71 274.6 345 69.0
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 4.4e-71 272.7 347 68.9
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 4.4e-71 272.7 352 67.9
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 1.3e-70 271.2 348 67.8
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.3e-70 271.2 347 69.5
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.7e-70 270.8 331 61.6
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.8e-70 270.0 363 67.5
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 2.8e-70 270.0 345 69.9
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 3.7e-70 269.6 349 68.2
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 8.2e-70 268.5 345 68.1
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 1.1e-69 268.1 344 69.2
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 1.4e-69 267.7 346 68.8
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 1.8e-69 267.3 361 67.9
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 1.8e-69 267.3 344 69.2
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.8e-69 267.3 348 69.0
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 2.4e-69 266.9 345 68.4
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 2.4e-69 266.9 348 67.2
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.1e-69 266.5 344 68.9
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 4.1e-69 266.2 346 69.4
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 5.3e-69 265.8 349 68.8
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 7.0e-69 265.4 331 70.4
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 1.6e-68 264.2 346 68.5
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 2.0e-68 263.8 347 68.9
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 2.0e-68 263.8 349 68.2
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 7.7e-68 261.9 280 77.9
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 7.7e-68 261.9 346 67.9
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 1.7e-67 260.8 336 70.2
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 2.2e-67 260.4 346 66.8
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 2.9e-67 260.0 346 67.9
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 2.9e-67 260.0 347 68.0
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.8e-67 259.6 346 68.2
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 5.0e-67 259.2 347 67.1
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 8.5e-67 258.5 347 67.7
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 8.5e-67 258.5 330 70.0
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.9e-66 257.3 346 67.3
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 4.2e-66 256.1 347 67.4
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 4.2e-66 256.1 344 68.0
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 7.2e-66 255.4 329 68.7
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 7.2e-66 255.4 349 53.0
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 9.4e-66 255.0 330 70.6
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 2.1e-65 253.8 350 51.4
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 2.1e-65 253.8 345 68.1
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 3.6e-65 253.1 326 70.2
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 4.7e-65 252.7 349 67.3
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 6.1e-65 252.3 348 67.0
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.4e-64 251.1 341 66.6
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 1.8e-64 250.8 327 70.6
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 4.0e-64 249.6 358 53.9
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 4.0e-64 249.6 346 56.6
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 8.8e-64 248.4 353 66.0
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 1.1e-63 248.1 348 66.4
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 1.5e-63 247.7 350 63.4
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 1.5e-63 247.7 350 63.4
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 2.0e-63 247.3 335 69.0
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 5.7e-63 245.7 329 67.2
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 9.7e-63 245.0 350 62.9
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 3.7e-62 243.0 341 66.6
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 4.8e-62 242.7 320 69.4
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 8.2e-62 241.9 350 62.6
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 1.8e-61 240.7 309 67.6
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 4.1e-61 239.6 327 68.5
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.6e-60 237.7 335 68.1
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 1.0e-59 235.0 277 75.5
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 1.3e-59 234.6 350 65.1
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 5.0e-59 232.6 347 63.4
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 8.5e-59 231.9 349 62.8
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 8.5e-59 231.9 352 62.8
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 4.2e-58 229.6 350 62.3
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 4.2e-58 229.6 346 65.6
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 7.2e-58 228.8 346 65.6
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 1.2e-57 228.0 332 67.2
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 3.6e-57 226.5 329 66.3
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 6.1e-57 225.7 348 41.7
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 1.0e-56 224.9 455 36.5
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 2.3e-56 223.8 327 66.7
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 2.0e-55 220.7 350 61.7
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 7.5e-55 218.8 347 61.4
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 7.5e-55 218.8 350 61.7
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 9.8e-55 218.4 302 70.5
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 3.1e-53 213.4 301 69.8
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 7.0e-53 212.2 348 60.1
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 3.2e-50 203.4 353 57.8
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 1.2e-49 201.4 310 63.2
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 2.1e-49 200.7 353 52.4
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 1.0e-48 198.4 356 51.1
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 1.4e-48 198.0 327 63.0
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 8.8e-48 195.3 281 72.6
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 7.5e-47 192.2 286 67.8
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 1.3e-46 191.4 347 57.1
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 8.3e-46 188.7 327 61.2
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 1.2e-44 184.9 291 69.1
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 1.1e-42 178.3 275 66.2
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.5e-42 177.2 133 78.2
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 6.1e-41 172.6 133 77.4
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.4e-40 171.4 282 53.5
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 1.4e-40 171.4 321 60.4
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 3.0e-40 170.2 324 58.0
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 2.6e-39 167.2 257 66.9
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 4.4e-39 166.4 282 66.3
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 9.8e-39 165.2 133 75.9
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 9.8e-39 165.2 304 61.5
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 3.9e-35 153.3 329 53.8
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 5.8e-31 139.4 318 55.0
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 1.1e-29 135.2 135 56.3
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 6.0e-28 129.4 133 63.2
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 7.8e-28 129.0 157 51.6
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 7.8e-28 129.0 116 66.4
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 1.3e-27 128.3 252 61.5
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 3.9e-27 126.7 333 52.6
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 6.2e-25 119.4 304 54.9
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 8.1e-25 119.0 249 62.2
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 1.4e-24 118.2 133 51.9
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 8.9e-24 115.5 138 49.3
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 1.2e-17 95.1 237 54.0
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 1.8e-16 91.3 57 71.9
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 7.6e-15 85.9 113 48.7
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 9.9e-15 85.5 85 74.1
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 7.8e-12 75.9 59 64.4
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 1.3e-11 75.1 57 66.7
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 6.6e-11 72.8 57 64.9


User provided reference genes

Program Settings