Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 0.0e+00 1844.3 934 100.0
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 0.0e+00 1412.1 967 76.4
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 0.0e+00 1393.6 939 76.1
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 0.0e+00 1117.8 953 61.5
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 0.0e+00 1102.4 977 60.5
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 0.0e+00 1099.3 949 61.3
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 0.0e+00 1093.6 968 60.1
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 0.0e+00 1088.9 952 59.5
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 0.0e+00 1083.9 949 60.1
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 0.0e+00 1075.8 1007 56.9
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 8.2e-310 1067.0 942 59.8
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 3.1e-309 1065.1 931 61.8
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 8.0e-305 1050.4 940 58.7
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 3.0e-304 1048.5 896 60.6
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 1.2e-303 1046.6 1007 56.5
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 7.5e-303 1043.9 747 67.9
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 1.7e-302 1042.7 950 57.5
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.8e-301 1039.3 958 58.0
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 5.4e-301 1037.7 1009 55.7
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.2e-300 1036.6 949 58.4
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 5.9e-300 1034.2 966 56.7
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.1e-298 1030.0 932 58.2
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 1.5e-298 1029.6 934 58.6
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 2.1e-297 1025.8 970 56.9
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 2.1e-297 1025.8 974 56.9
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 1.0e-296 1023.5 949 57.2
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 8.8e-296 1020.4 942 57.4
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.2e-295 1020.0 966 56.3
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 1.3e-294 1016.5 1012 54.2
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.9e-294 1014.6 930 57.5
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 6.3e-294 1014.2 914 56.5
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 1.8e-293 1012.7 953 57.3
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 2.7e-292 1008.8 1026 53.3
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 3.5e-292 1008.4 971 55.5
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 7.8e-292 1007.3 989 55.3
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 2.9e-291 1005.4 967 55.9
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 5.0e-291 1004.6 760 65.4
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 8.6e-291 1003.8 998 55.1
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 1.2e-289 1000.0 902 57.9
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 8.0e-289 997.3 970 55.1
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 8.0e-289 997.3 930 56.3
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 8.0e-289 997.3 980 53.9
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.0e-288 996.9 962 56.0
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 8.9e-288 993.8 983 54.0
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 7.5e-287 990.7 933 56.9
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 2.7e-284 982.2 942 56.4
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.5e-284 981.9 958 55.5
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.0e-283 980.3 968 54.6
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 1.3e-283 979.9 967 55.4
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 2.3e-283 979.2 991 54.5
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 4.7e-281 971.5 946 56.9
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 9.8e-279 963.8 963 54.0
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 1.7e-278 963.0 924 55.8
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 3.7e-278 961.8 1003 53.3
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 8.3e-278 960.7 977 55.4
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 1.9e-277 959.5 930 56.0
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.3e-274 948.3 931 55.7
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 1.2e-273 946.8 937 55.5
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.1e-273 946.0 971 53.1
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 4.7e-273 944.9 940 54.4
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 1.7e-270 936.4 922 53.8
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 8.6e-267 924.1 946 55.0
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 7.3e-266 921.0 952 53.5
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 9.5e-266 920.6 975 50.8
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 3.2e-261 905.6 981 52.2
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 4.1e-261 905.2 920 53.7
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 6.6e-259 897.9 923 52.9
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 9.6e-258 894.0 953 51.4
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 2.8e-257 892.5 922 53.3
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 2.8e-257 892.5 968 50.5
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 5.2e-256 888.3 933 52.4
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 9.0e-256 887.5 954 50.9
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 1.7e-254 883.2 933 52.0
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 2.9e-254 882.5 923 52.4
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 1.4e-253 880.2 930 51.7
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 2.4e-253 879.4 949 51.2
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 4.2e-253 878.6 905 53.4
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 4.0e-248 862.1 980 48.9
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 3.4e-247 859.0 684 63.3
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 3.4e-247 859.0 943 50.1
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 2.2e-246 856.3 893 53.0
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.2e-244 850.5 940 49.9
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 1.2e-239 833.9 810 55.9
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 2.0e-239 833.2 966 49.5
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 2.4e-224 783.1 527 71.9
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 6.5e-222 775.0 700 57.3
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 2.6e-215 753.1 554 67.3
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 3.3e-210 736.1 571 63.4
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 4.4e-210 735.7 922 46.4
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 2.9e-206 723.0 957 45.4
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 4.4e-202 709.1 728 54.8
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 2.6e-199 699.9 460 72.6
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 8.8e-195 684.9 778 49.6
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.1e-192 677.9 1025 40.3
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 7.7e-191 671.8 739 51.6
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 1.2e-186 657.9 865 43.0
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.8e-185 652.5 928 42.8
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 2.3e-182 643.7 1149 36.3
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 5.0e-182 642.5 480 68.8
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.6e-170 603.6 600 52.0
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 6.0e-167 592.4 993 38.8
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.8e-164 583.6 717 45.6
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.6e-158 562.4 847 41.2
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.3e-149 532.3 735 42.2
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 7.1e-144 515.8 442 61.5
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 7.1e-144 515.8 442 61.5
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-143 515.0 920 37.2
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.3e-134 484.2 475 51.8
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 4.8e-132 476.5 314 72.0
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.9e-130 468.8 711 42.6
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 1.7e-129 468.0 279 79.6
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.4e-125 452.6 615 44.4
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 1.7e-121 441.4 481 53.2
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 1.4e-112 411.8 601 42.9
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 2.1e-111 407.9 358 59.2
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.5e-101 374.4 368 56.5
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.4e-101 372.9 741 34.0
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.9e-99 366.3 738 35.1
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 2.2e-92 344.7 438 48.6
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-89 335.9 862 31.9
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 7.4e-85 319.7 435 42.8
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 2.0e-82 311.6 403 43.2
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 4.7e-79 300.4 393 44.3
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 5.7e-77 293.5 636 32.1
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 1.0e-73 282.7 393 43.3
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 3.6e-71 274.2 160 75.6
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 1.1e-67 262.7 270 49.3
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 5.7e-61 240.4 141 78.0
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 6.6e-57 226.9 412 38.1
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.8e-55 221.5 191 54.5
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 1.5e-48 199.1 718 27.3
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.4e-45 187.6 165 60.6
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 1.7e-44 185.7 110 81.8
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 1.1e-43 183.0 385 32.2
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-43 183.0 159 52.2
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 3.2e-43 181.4 544 30.1
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 5.4e-43 180.6 106 79.2
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.1e-42 178.7 141 65.2
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 1.9e-40 172.2 168 54.2
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 5.6e-40 170.6 111 73.0
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 8.1e-39 166.8 258 38.0
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-34 152.5 629 27.3
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 9.6e-32 143.3 253 41.1
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 2.4e-27 128.6 86 67.4
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 5.4e-27 127.5 92 64.1
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 1.2e-26 126.3 84 71.4
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 2.1e-26 125.6 134 53.7
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 6.2e-23 114.0 82 73.2
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 9.9e-21 106.7 83 62.7
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 3.3e-16 91.7 91 56.0
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 9.6e-16 90.1 170 38.8
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 1.1e-14 86.7 110 43.6
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 1.1e-11 76.6 64 59.4
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 4.6e-10 71.2 77 46.8
EL10Ac3g05590 Beta vulgaris HOM05D004739 ORTHO05D005784 7.4e-08 63.9 94 38.3
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.6e-08 63.5 71 46.5


User provided reference genes

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