Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0198261 Helianthus annuus HOM05D061993 ORTHO05D026735 1.3e-61 239.6 124 100.0
HanXRQChr15g0475731 Helianthus annuus HOM05D000268 ORTHO05D000261 5.9e-14 81.3 38 92.1
HanXRQChr02g0032881 Helianthus annuus HOM05D061993 ORTHO05D026735 2.2e-13 79.3 40 100.0
ECA246G2162 Erigeron canadensis HOM05D000268 ORTHO05D000261 7.2e-12 74.3 38 81.6
Lsat_1_v5_gn_3_106460 Lactuca sativa HOM05D000268 ORTHO05D000261 6.1e-11 71.2 35 85.7
GSVIVG01032986001 Vitis vinifera HOM05D000268 ORTHO05D000261 3.0e-10 68.9 39 71.8
FAN02G1853 Fragaria x ananassa HOM05D000877 ORTHO05D001509 1.2e-09 67.0 38 68.4
CSS0021102 Camellia sinensis var. sinensis HOM05D000268 ORTHO05D000261 1.5e-09 66.6 34 79.4
TAR475G0006 Trochodendron aralioides HOM05D000268 ORTHO05D000261 1.5e-09 66.6 41 68.3
AUR62017429 Chenopodium quinoa HOM05D000268 ORTHO05D000261 2.0e-09 66.2 36 75.0
AUR62037824 Chenopodium quinoa HOM05D000268 ORTHO05D000261 2.0e-09 66.2 36 75.0
Lj7A617G73 Lonicera japonica HOM05D000268 ORTHO05D000261 2.6e-09 65.9 35 77.1
Atru.chr6.2694 Acer truncatum HOM05D000268 ORTHO05D000261 3.4e-09 65.5 38 65.8
EL10Ac6g13405 Beta vulgaris HOM05D000268 ORTHO05D000261 3.4e-09 65.5 38 68.4
Nitab4.5_0000519g0330 Nicotiana tabacum HOM05D000268 ORTHO05D000261 3.4e-09 65.5 33 78.8
Nitab4.5_0002172g0190 Nicotiana tabacum HOM05D000268 ORTHO05D000261 3.4e-09 65.5 33 78.8
Peaxi162Scf00420g00852 Petunia axillaris HOM05D000268 ORTHO05D000261 3.4e-09 65.5 33 78.8
Sc03g0005230 Simmondsia chinensis HOM05D000268 ORTHO05D000261 3.4e-09 65.5 38 71.1
SGA_v2.0_scaffold34G13689 Striga asiatica HOM05D000268 ORTHO05D000261 3.4e-09 65.5 35 77.1
Actinidia37718 Actinidia chinensis HOM05D000268 ORTHO05D000261 4.4e-09 65.1 34 73.5
FvH4_6g54300 Fragaria vesca HOM05D000268 ORTHO05D000261 4.4e-09 65.1 38 65.8
FAN05G0965 Fragaria x ananassa HOM05D000268 ORTHO05D000261 4.4e-09 65.1 38 65.8
FAN09G1101 Fragaria x ananassa HOM05D000268 ORTHO05D000261 4.4e-09 65.1 38 65.8
FAN14G3196 Fragaria x ananassa HOM05D000268 ORTHO05D000261 4.4e-09 65.1 38 65.8
Nn4g22135 Nelumbo nucifera HOM05D000268 ORTHO05D000261 4.4e-09 65.1 38 63.2
Prupe.3G313600 Prunus persica HOM05D000268 ORTHO05D000261 4.4e-09 65.1 38 65.8
RcHm_v2.0_Chr2g0176511 Rosa chinensis HOM05D000268 ORTHO05D000261 4.4e-09 65.1 38 65.8
Ah.02g128840 Amaranthus hybridus HOM05D000268 ORTHO05D000261 5.7e-09 64.7 36 72.2
Migut.K00076 Erythranthe guttata HOM05D000268 ORTHO05D000261 5.7e-09 64.7 31 83.9
Sed0027464 Sechium edule HOM05D000268 ORTHO05D000261 5.7e-09 64.7 42 59.5
Hund12905 Selenicereus undatus HOM05D000268 ORTHO05D000261 5.7e-09 64.7 36 72.2
Ah.03g136410 Amaranthus hybridus HOM05D000268 ORTHO05D000261 7.5e-09 64.3 36 72.2
CSS0012708 Camellia sinensis var. sinensis HOM05D000268 ORTHO05D000261 7.5e-09 64.3 35 77.1
Dinv25617 Davidia involucrata HOM05D000268 ORTHO05D000261 7.5e-09 64.3 35 74.3
Oeu031949.1 Olea europaea HOM05D000268 ORTHO05D000261 7.5e-09 64.3 40 65.0
Sed0001012 Sechium edule HOM05D000268 ORTHO05D000261 7.5e-09 64.3 42 57.1
Aa31LG11G15420 Aethionema arabicum HOM05D000268 ORTHO05D000261 9.8e-09 63.9 59 50.8
CANSAT64G0556 Cannabis sativa HOM05D000268 ORTHO05D000261 9.8e-09 63.9 38 63.2
CARHR199440 Cardamine hirsuta HOM05D000268 ORTHO05D000261 9.8e-09 63.9 42 57.1
DCAR_014470 Daucus carota HOM05D000268 ORTHO05D000261 9.8e-09 63.9 33 75.8
Eucgr.G01930 Eucalyptus grandis HOM05D000268 ORTHO05D000261 9.8e-09 63.9 42 59.5
Gohir.A05G334400 Gossypium hirsutum HOM05D000268 ORTHO05D000261 9.8e-09 63.9 38 63.2
Gohir.D04G073300 Gossypium hirsutum HOM05D000268 ORTHO05D000261 9.8e-09 63.9 38 63.2
Gorai.012G082600 Gossypium raimondii HOM05D000268 ORTHO05D000261 9.8e-09 63.9 38 63.2
Lalb_Chr22g0359981 Lupinus albus HOM05D000268 ORTHO05D000261 9.8e-09 63.9 42 59.5
SEGI_17471 Sequoiadendron giganteum HOM05D000268 ORTHO05D000261 9.8e-09 63.9 38 63.2
AL6G24620 Arabidopsis lyrata HOM05D000268 ORTHO05D000261 1.7e-08 63.2 51 52.9
A03p06320 Brassica napus HOM05D000268 ORTHO05D000261 1.7e-08 63.2 47 59.6
BraA03t09962Z Brassica rapa HOM05D000268 ORTHO05D000261 1.7e-08 63.2 47 59.6
MD09G1002600 Malus domestica HOM05D000268 ORTHO05D000261 1.7e-08 63.2 36 66.7
Peaxi162Scf00038g01131 Petunia axillaris HOM05D000268 ORTHO05D000261 1.7e-08 63.2 40 65.0
Sc16g0004340 Simmondsia chinensis HOM05D000268 ORTHO05D000261 1.7e-08 63.2 38 63.2
Thecc.04G047900 Theobroma cacao HOM05D000268 ORTHO05D000261 1.7e-08 63.2 38 60.5
vmacro18380 Vaccinium macrocarpon HOM05D000268 ORTHO05D000261 1.7e-08 63.2 40 62.5
Manes.04G093100 Manihot esculenta HOM05D000268 ORTHO05D000261 2.2e-08 62.8 38 60.5
PSO732G0069 Papaver somniferum HOM05D000268 ORTHO05D000261 2.2e-08 62.8 38 63.2
Prupe.1G216000 Prunus persica HOM05D000268 ORTHO05D000261 2.2e-08 62.8 35 71.4
Sp6g30040 Schrenkiella parvula HOM05D000268 ORTHO05D000261 2.2e-08 62.8 38 60.5
Ciclev10018093m.g Citrus clementina HOM05D000268 ORTHO05D000261 2.8e-08 62.4 37 67.6
MELO3C014780.2 Cucumis melo HOM05D000268 ORTHO05D000261 2.8e-08 62.4 42 52.4
MSTRG.24120 Avicennia marina HOM05D000268 ORTHO05D000261 3.7e-08 62.0 34 73.5
BcaB01g05324 Brassica carinata HOM05D000268 ORTHO05D000261 3.7e-08 62.0 43 62.8
C03p07290 Brassica napus HOM05D000268 ORTHO05D000261 3.7e-08 62.0 43 62.8
BolC3t13231H Brassica oleracea HOM05D000268 ORTHO05D000261 3.7e-08 62.0 43 62.8
COL.COLO4_13375 Corchorus olitorius HOM05D000268 ORTHO05D000261 3.7e-08 62.0 38 57.9
Glyma.16G047800 Glycine max HOM05D000268 ORTHO05D000261 3.7e-08 62.0 36 66.7
AT5G13960 Arabidopsis thaliana HOM05D000268 ORTHO05D000261 4.9e-08 61.6 51 51.0
CsaV3_3G027790 Cucumis sativus L. HOM05D000268 ORTHO05D000261 4.9e-08 61.6 42 52.4
MD17G1006800 Malus domestica HOM05D000268 ORTHO05D000261 4.9e-08 61.6 36 63.9
Hund06131 Selenicereus undatus HOM05D000268 ORTHO05D000261 4.9e-08 61.6 35 68.6
Solyc02g094520.3 Solanum lycopersicum HOM05D000268 ORTHO05D000261 4.9e-08 61.6 35 68.6
Sopen02g039200 Solanum pennellii HOM05D000268 ORTHO05D000261 4.9e-08 61.6 35 68.6
Aqoxy5G03142 Aquilegia oxysepala HOM05D000268 ORTHO05D000261 6.3e-08 61.2 42 61.9
EL10Ac6g13607 Beta vulgaris HOM05D000268 ORTHO05D000261 6.3e-08 61.2 35 65.7
Cfa007163 Carpinus fangiana HOM05D000268 ORTHO05D000261 6.3e-08 61.2 38 60.5
Haze_01633 Corylus avellana HOM05D002987 ORTHO05D003359 6.3e-08 61.2 40 57.5
Hma1.2p1_0868F.1_g230480 Hydrangea macrophylla HOM05D000268 ORTHO05D000261 6.3e-08 61.2 32 78.1
Lj5g0006953 Lotus japonicus HOM05D000268 ORTHO05D000261 6.3e-08 61.2 35 74.3
PSO675G7686 Papaver somniferum HOM05D000268 ORTHO05D000261 6.3e-08 61.2 38 60.5
Phvul.002G094200 Phaseolus vulgaris HOM05D000268 ORTHO05D000261 6.3e-08 61.2 44 54.5
Psat3g093120 Pisum sativum HOM05D000268 ORTHO05D000261 6.3e-08 61.2 38 60.5
Potri.002G237950 Populus trichocarpa HOM05D000268 ORTHO05D000261 6.3e-08 61.2 45 53.3
Sc04g0004620 Simmondsia chinensis HOM05D000268 ORTHO05D000261 6.3e-08 61.2 38 57.9
Ah.03g135570 Amaranthus hybridus HOM05D000268 ORTHO05D000261 8.3e-08 60.8 42 59.5
CAN.G473.159 Capsicum annuum HOM05D000268 ORTHO05D000261 8.3e-08 60.8 33 72.7
Ca_08142_v3 Cicer arietinum L. HOM05D000268 ORTHO05D000261 8.3e-08 60.8 38 60.5
Haze_14950 Corylus avellana HOM05D000268 ORTHO05D000261 8.3e-08 60.8 38 57.9
Medtr6g061200 Medicago truncatula HOM05D000268 ORTHO05D000261 8.3e-08 60.8 38 60.5
Medtr6g061270 Medicago truncatula HOM05D000268 ORTHO05D000261 8.3e-08 60.8 38 60.5
Medtr7g084090 Medicago truncatula HOM05D000268 ORTHO05D000261 8.3e-08 60.8 38 60.5
PGR042G3237 Punica granatum HOM05D000268 ORTHO05D000261 8.3e-08 60.8 37 62.2
QL02p069506 Quercus lobata HOM05D000268 ORTHO05D000261 8.3e-08 60.8 38 60.5
Rhsim08G0039100 Rhododendron simsii HOM05D000268 ORTHO05D000261 8.3e-08 60.8 33 69.7
Sabra02G0181400 Salix brachista HOM05D000268 ORTHO05D000261 8.3e-08 60.8 38 57.9
TWI18G0425 Tripterygium wilfordii HOM05D000268 ORTHO05D000261 8.3e-08 60.8 41 56.1
arahy.Tifrunner.gnm1.ann1.ZU3NW2 Arachis hypogaea HOM05D000268 ORTHO05D000261 1.1e-07 60.5 36 63.9
CiPaw.04G001400 Carya illinoinensis HOM05D000268 ORTHO05D000261 1.1e-07 60.5 38 57.9
CDE05G2214 Ceratophyllum demersum HOM05D000268 ORTHO05D000261 1.1e-07 60.5 38 57.9
Glyma.13G166000 Glycine max HOM05D000268 ORTHO05D000261 1.1e-07 60.5 48 54.2
Lj1g0012834 Lotus japonicus HOM05D000268 ORTHO05D000261 1.1e-07 60.5 36 63.9
TPR.G15415 Trifolium pratense HOM05D000268 ORTHO05D000261 1.1e-07 60.5 36 63.9
VMungo1383G2161 Vigna mungo HOM05D000268 ORTHO05D000261 1.1e-07 60.5 36 63.9
AUR62028843 Chenopodium quinoa HOM05D000268 ORTHO05D000261 1.4e-07 60.1 35 65.7
Carub.0300s0001 Capsella rubella HOM05D000268 ORTHO05D000261 1.8e-07 59.7 38 57.9
MBI10_g42794_MAGBIO Magnolia biondii HOM05D000268 ORTHO05D000261 1.8e-07 59.7 38 57.9
Cc07_g01290 Coffea canephora HOM05D000268 ORTHO05D000261 2.4e-07 59.3 30 76.7
PSO135G0329 Papaver somniferum HOM05D000268 ORTHO05D000261 2.4e-07 59.3 33 66.7
Potri.014G143900 Populus trichocarpa HOM05D000268 ORTHO05D000261 2.4e-07 59.3 45 51.1
vmacro22249 Vaccinium macrocarpon HOM05D000268 ORTHO05D000261 2.4e-07 59.3 31 77.4
Thhalv10012985m.g Eutrema salsugineum HOM05D000268 ORTHO05D000261 3.1e-07 58.9 38 57.9
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 3.1e-07 58.9 43 76.7
SHI11394 Sapria himalayana HOM05D000268 ORTHO05D000261 4.1e-07 58.5 35 62.9
Pp3c4_9720 Physcomitrium patens HOM05D000268 ORTHO05D000261 5.4e-07 58.2 35 68.6
MD16G1130300 Malus domestica HOM05D000268 ORTHO05D000261 7.0e-07 57.8 35 62.9
Os01g0927000 Oryza sativa ssp. japonica HOM05D000268 ORTHO05D000261 7.0e-07 57.8 59 44.1
AUR62005711 Chenopodium quinoa HOM05D000268 ORTHO05D000261 9.2e-07 57.4 37 59.5
COL.COLO4_27624 Corchorus olitorius HOM05D000268 ORTHO05D000261 9.2e-07 57.4 38 55.3
FvH4_4g22710 Fragaria vesca HOM05D000268 ORTHO05D000261 9.2e-07 57.4 35 65.7
FAN07G1809 Fragaria x ananassa HOM05D000268 ORTHO05D000261 9.2e-07 57.4 35 65.7
FAN12G2079 Fragaria x ananassa HOM05D000268 ORTHO05D000261 9.2e-07 57.4 35 65.7
RcHm_v2.0_Chr4g0428931 Rosa chinensis HOM05D000268 ORTHO05D000261 9.2e-07 57.4 35 65.7
unitig_37.g12010 Utricularia gibba HOM05D001191 ORTHO05D000979 9.2e-07 57.4 33 66.7
AUR62035310 Chenopodium quinoa HOM05D000268 ORTHO05D026735 1.2e-06 57.0 45 55.6
ECA234G4764 Erigeron canadensis HOM05D000268 ORTHO05D000261 1.2e-06 57.0 44 56.8
Hma1.2p1_0421F.1_g149950 Hydrangea macrophylla HOM05D000268 ORTHO05D000261 1.2e-06 57.0 35 68.6
GSVIVG01001083001 Vitis vinifera HOM05D000268 ORTHO05D000261 1.6e-06 56.6 41 56.1
THA.LOC104822423 Tarenaya hassleriana HOM05D000268 ORTHO05D000261 2.0e-06 56.2 38 50.0
Zm00001eb363830 Zea mays HOM05D000268 ORTHO05D000261 2.0e-06 56.2 37 56.8
Haze_12498 Corylus avellana HOM05D000268 ORTHO05D000261 3.5e-06 55.5 34 67.6
HanXRQChr12g0384711 Helianthus annuus HOM05D000268 ORTHO05D000261 3.5e-06 55.5 44 54.5
TPR.G12796 Trifolium pratense HOM05D000268 ORTHO05D000261 3.5e-06 55.5 36 55.6
HPP92_007044 Vanilla planifolia HOM05D000268 ORTHO05D000261 3.5e-06 55.5 51 51.0
Aqoxy1G04239 Aquilegia oxysepala HOM05D000268 ORTHO05D026735 5.9e-06 54.7 35 60.0
Lsat_1_v5_gn_4_1420 Lactuca sativa HOM05D000268 ORTHO05D000261 5.9e-06 54.7 47 46.8
MD13G1130100 Malus domestica HOM05D000268 ORTHO05D000261 5.9e-06 54.7 35 57.1
Pp3c12_13280 Physcomitrium patens HOM05D000268 ORTHO05D000261 5.9e-06 54.7 35 62.9


User provided reference genes

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