Gene: AT5G13960

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G13960
  • Transcript Identifier AT5G13960.1
  • Gene Type Coding gene
  • Location Chr5 : 4501688-4505979 : positive

Gene Family Information

  • ID HOM05D000268
  • #Genes/#Species 1624/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G13960.1
  • symbol SUVH4
  • Alias KYP,KRYPTONITE,SDG33,SET DOMAIN PROTEIN 33
  • full_name SU(VAR)3-9 homolog 4
  • uniprot Q8GZB6

Descriptions

  • Description histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like protein
  • Computational description SU(VAR)3-9 homolog 4 (SUVH4); FUNCTIONS IN: double-stranded methylated DNA binding, methyl-CpNpG binding, methyl-CpG binding, histone methyltransferase activity (H3-K9 specific), methyl-CpNpN binding; INVOLVED IN: maintenance of DNA methylation, histone methylation, peptidyl-lysine methylation, histone H3-K9 methylation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 6 (TAIR:AT2G22740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034968
IEA
Gene Ontologyhistone lysine methylation
GO:0034968
IEA
InterProhistone lysine methylation
GO:0016571
IEA
GOA Databasehistone methylation
GO:0016571
IDA
Gene Ontologyhistone methylation1
GO:0032259
IEA
GOA Databasemethylation
GO:0006325
IEA
GOA Databasechromatin organization
GO:0051567
IMP
Gene Ontologyhistone H3-K9 methylation2
GO:0018022
IDA
Gene Ontologypeptidyl-lysine methylation1
GO:0010216
IDA
Gene Ontologymaintenance of DNA methylation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0005515
IEA
InterProprotein binding
GO:0018024
IEA
Gene Ontologyhistone-lysine N-methyltransferase activity
GO:0018024
IEA
InterProhistone-lysine N-methyltransferase activity
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0010429
IDA
Gene Ontologymethyl-CpNpN binding4
GO:0010428
IDA
Gene Ontologymethyl-CpNpG binding4
GO:0010385
IDA
Gene Ontologydouble-stranded methylated DNA binding4
GO:0008327
IDA
Gene Ontologymethyl-CpG binding4
GO:0046974
IDA
Gene Ontologyhistone methyltransferase activity (H3-K9 specific)1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IEA
GOA Databasechromosome
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005634
IEA
InterPronucleus
GO:0000775
IEA
GOA Databasechromosome, centromeric region

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003105 SRA-YDG
IPR036987 SRA-YDG superfamily
IPR007728 Pre-SET domain
IPR001214 SET domain
IPR015947 PUA-like superfamily
Mapman id Description
50.2.1 Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group