Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 1.9e-44 182.2 96 100.0
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 2.3e-18 95.5 79 72.2
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 2.2e-16 89.0 79 64.6
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 4.9e-16 87.8 79 64.6
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 2.4e-15 85.5 79 62.0
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 2.4e-15 85.5 79 64.6
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 3.2e-15 85.1 79 63.3
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 3.2e-15 85.1 79 64.6
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 3.2e-15 85.1 79 64.6
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 4.1e-15 84.7 83 59.0
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 9.2e-15 83.6 79 62.0
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 1.2e-14 83.2 78 62.8
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 1.6e-14 82.8 79 60.8
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.6e-14 82.8 79 60.8
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 1.6e-14 82.8 79 63.3
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 1.6e-14 82.8 79 59.5
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 1.6e-14 82.8 79 60.8
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 2.1e-14 82.4 78 61.5
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 2.1e-14 82.4 78 61.5
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 2.1e-14 82.4 78 61.5
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 2.1e-14 82.4 78 61.5
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 2.1e-14 82.4 79 60.8
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.1e-14 82.4 79 60.8
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 2.1e-14 82.4 79 59.5
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 2.7e-14 82.0 78 61.5
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 2.7e-14 82.0 79 59.5
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 2.7e-14 82.0 79 60.8
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 2.7e-14 82.0 79 60.8
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.7e-14 82.0 79 59.5
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.7e-14 82.0 79 59.5
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 2.7e-14 82.0 79 59.5
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 2.7e-14 82.0 79 59.5
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 2.7e-14 82.0 79 60.8
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 3.5e-14 81.6 79 59.5
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 3.5e-14 81.6 79 59.5
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 3.5e-14 81.6 79 59.5
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 3.5e-14 81.6 79 59.5
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 3.5e-14 81.6 79 59.5
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 3.5e-14 81.6 78 61.5
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 4.6e-14 81.3 79 59.5
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 4.6e-14 81.3 79 59.5
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 4.6e-14 81.3 78 61.5
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 4.6e-14 81.3 78 61.5
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 4.6e-14 81.3 79 59.5
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 4.6e-14 81.3 79 59.5
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 4.6e-14 81.3 79 60.8
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 4.6e-14 81.3 79 59.5
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 6.0e-14 80.9 79 60.8
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 6.0e-14 80.9 79 58.2
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 7.8e-14 80.5 78 60.3
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 7.8e-14 80.5 78 60.3
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 7.8e-14 80.5 79 60.8
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 7.8e-14 80.5 79 58.2
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.0e-13 80.1 79 59.5
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 1.0e-13 80.1 79 59.5
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 1.0e-13 80.1 79 58.2
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 1.0e-13 80.1 79 59.5
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 1.0e-13 80.1 79 59.5
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.0e-13 80.1 79 59.5
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.0e-13 80.1 79 59.5
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 1.0e-13 80.1 79 58.2
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 1.3e-13 79.7 79 58.2
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 1.3e-13 79.7 79 57.0
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.3e-13 79.7 79 57.0
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 1.3e-13 79.7 79 57.0
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 1.3e-13 79.7 79 59.5
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.7e-13 79.3 80 57.5
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 1.7e-13 79.3 79 58.2
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 1.7e-13 79.3 79 57.0
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 2.3e-13 79.0 79 58.2
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 2.3e-13 79.0 79 58.2
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 2.3e-13 79.0 79 58.2
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 3.0e-13 78.6 79 55.7
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 3.0e-13 78.6 79 57.0
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 3.0e-13 78.6 78 59.0
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 3.9e-13 78.2 79 55.7
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 3.9e-13 78.2 79 55.7
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 6.6e-13 77.4 79 58.2
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 8.6e-13 77.0 79 55.7
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 1.1e-12 76.6 79 54.4
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 1.5e-12 76.3 79 57.0
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 1.5e-12 76.3 79 57.0
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.9e-12 75.9 78 57.7
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 1.9e-12 75.9 79 57.0
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 1.9e-12 75.9 79 55.7
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.5e-12 75.5 78 55.1
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 3.3e-12 75.1 79 55.7
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 3.3e-12 75.1 79 55.7
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 4.3e-12 74.7 79 55.7
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 9.6e-12 73.6 79 55.7
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 1.6e-11 72.8 76 57.9
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 2.1e-11 72.4 71 60.6
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 2.8e-11 72.0 79 57.0
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 3.6e-11 71.6 79 53.2
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 4.7e-11 71.2 79 54.4
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 3.1e-10 68.6 79 53.2
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 4.0e-10 68.2 79 53.2
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 5.2e-10 67.8 79 54.4
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 6.8e-10 67.4 79 51.9
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 6.8e-10 67.4 79 51.9
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 1.5e-09 66.2 79 50.6
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 1.5e-09 66.2 79 51.9
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 1.5e-09 66.2 79 51.9
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 2.0e-09 65.9 79 51.9
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 2.0e-09 65.9 79 51.9
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 2.6e-09 65.5 79 51.9
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 2.6e-09 65.5 79 53.2
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 3.4e-09 65.1 79 50.6
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 3.4e-09 65.1 79 50.6
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 3.4e-09 65.1 79 50.6
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 3.4e-09 65.1 79 50.6
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 4.4e-09 64.7 79 46.8
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 4.4e-09 64.7 78 48.7
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 4.4e-09 64.7 79 49.4
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 5.8e-09 64.3 78 48.7
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 7.6e-09 63.9 81 49.4
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 7.6e-09 63.9 56 58.9
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 7.6e-09 63.9 79 50.6
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 2.9e-08 62.0 79 50.6
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 3.8e-08 61.6 79 48.1
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 3.8e-08 61.6 79 46.8
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 4.9e-08 61.2 78 47.4
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 1.9e-07 59.3 79 48.1
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 5.4e-07 57.8 47 63.8
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 9.3e-07 57.0 54 59.3
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 2.7e-06 55.5 78 48.7


User provided reference genes

Program Settings