Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 9.9e-121 437.2 290 100.0
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 3.3e-84 315.8 229 97.8
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 5.2e-77 292.0 232 80.6
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.8e-74 283.5 229 81.2
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 9.1e-74 281.2 229 70.7
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 2.0e-73 280.0 229 66.8
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 2.0e-73 280.0 231 75.3
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.0e-72 277.7 229 69.9
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.7e-72 276.9 230 70.0
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 2.9e-72 276.2 271 74.2
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 2.9e-72 276.2 229 63.8
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.8e-72 275.8 231 69.3
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.8e-72 275.8 231 69.3
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 3.8e-72 275.8 229 70.3
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 3.8e-72 275.8 229 70.3
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 3.8e-72 275.8 229 73.4
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 6.5e-72 275.0 229 75.1
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 1.5e-71 273.9 229 75.5
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 3.2e-71 272.7 230 79.1
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 3.2e-71 272.7 246 63.8
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 3.2e-71 272.7 230 69.6
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 5.5e-71 271.9 231 81.8
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 7.2e-71 271.6 231 74.0
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 7.2e-71 271.6 230 67.4
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 9.4e-71 271.2 230 71.7
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 9.4e-71 271.2 231 69.7
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 2.1e-70 270.0 230 68.3
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 2.1e-70 270.0 231 71.9
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.7e-70 269.6 229 74.2
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 3.6e-70 269.2 229 64.2
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 3.6e-70 269.2 229 70.3
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 4.7e-70 268.9 229 66.4
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 6.1e-70 268.5 230 67.0
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 6.1e-70 268.5 229 71.2
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 1.0e-69 267.7 230 72.6
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 1.4e-69 267.3 229 64.6
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.4e-69 267.3 234 76.5
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 2.3e-69 266.5 231 63.6
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 2.3e-69 266.5 231 70.1
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 2.3e-69 266.5 230 67.0
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 2.3e-69 266.5 230 77.4
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 3.0e-69 266.2 232 70.3
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 3.0e-69 266.2 230 69.1
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 4.0e-69 265.8 231 72.3
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 4.0e-69 265.8 229 70.7
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 5.2e-69 265.4 233 79.8
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 6.8e-69 265.0 233 67.8
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 6.8e-69 265.0 230 69.6
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 6.8e-69 265.0 230 73.5
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 6.8e-69 265.0 231 69.7
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 6.8e-69 265.0 229 70.7
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 6.8e-69 265.0 229 68.6
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 6.8e-69 265.0 229 65.1
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 8.8e-69 264.6 235 67.7
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 8.8e-69 264.6 231 65.8
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 8.8e-69 264.6 233 77.7
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 8.8e-69 264.6 231 69.7
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.2e-68 264.2 232 64.2
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 1.5e-68 263.8 230 70.9
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 2.0e-68 263.5 230 70.0
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 2.0e-68 263.5 230 68.7
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 2.0e-68 263.5 229 65.9
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.0e-68 263.5 229 84.3
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.0e-68 263.5 229 84.3
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 2.0e-68 263.5 234 69.2
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 2.6e-68 263.1 232 64.2
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 2.6e-68 263.1 230 71.7
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 4.4e-68 262.3 231 66.7
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 4.4e-68 262.3 229 76.9
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.4e-68 262.3 229 83.8
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.7e-68 261.9 229 75.1
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 7.5e-68 261.5 232 71.1
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 9.8e-68 261.2 231 71.0
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 9.8e-68 261.2 234 78.6
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 9.8e-68 261.2 234 78.6
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 9.8e-68 261.2 230 70.4
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 1.3e-67 260.8 230 72.2
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 2.2e-67 260.0 231 69.7
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 2.2e-67 260.0 231 74.0
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.2e-67 260.0 231 71.4
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 2.8e-67 259.6 230 75.2
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 3.7e-67 259.2 231 65.8
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 4.8e-67 258.8 231 65.4
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 6.3e-67 258.5 243 66.3
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.3e-67 258.5 229 83.4
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 6.3e-67 258.5 235 69.4
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 8.3e-67 258.1 276 58.7
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 1.1e-66 257.7 229 76.4
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 2.4e-66 256.5 234 70.1
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 3.1e-66 256.1 232 64.7
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 5.4e-66 255.4 232 65.5
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 5.4e-66 255.4 232 65.5
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 7.0e-66 255.0 231 64.9
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 9.1e-66 254.6 232 65.1
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 9.1e-66 254.6 233 66.5
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 9.1e-66 254.6 233 66.5
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 9.1e-66 254.6 229 81.7
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 9.1e-66 254.6 232 65.5
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 1.2e-65 254.2 231 64.9
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.2e-65 254.2 234 68.8
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 2.0e-65 253.4 233 66.1
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 2.0e-65 253.4 233 68.2
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 2.0e-65 253.4 231 65.4
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 3.5e-65 252.7 232 67.2
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 3.5e-65 252.7 232 65.5
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 3.5e-65 252.7 237 73.0
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 4.5e-65 252.3 232 64.7
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.5e-65 252.3 234 68.4
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.9e-65 251.9 233 67.8
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.9e-65 251.9 233 64.8
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 7.7e-65 251.5 232 65.9
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 7.7e-65 251.5 232 65.9
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 1.7e-64 250.4 231 73.6
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 2.2e-64 250.0 284 55.6
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 3.8e-64 249.2 225 72.9
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 5.0e-64 248.8 232 65.1
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 5.0e-64 248.8 232 65.1
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 6.5e-64 248.4 230 64.8
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 8.5e-64 248.1 232 65.1
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 1.1e-63 247.7 232 62.9
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.1e-63 247.7 229 65.5
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 2.5e-63 246.5 232 62.5
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 1.6e-62 243.8 232 69.0
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 8.0e-62 241.5 232 63.8
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 1.0e-61 241.1 232 73.7
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 4.0e-61 239.2 232 63.8
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 4.0e-61 239.2 256 63.7
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.2e-60 237.7 229 60.3
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 2.6e-60 236.5 230 64.3
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 1.7e-59 233.8 251 53.4
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.5e-57 225.7 217 68.7
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.9e-56 223.0 233 71.7
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 1.9e-55 220.3 235 57.9
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 9.5e-55 218.0 235 62.1
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 5.2e-53 212.2 232 59.1
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 2.9e-51 206.5 231 61.5
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.9e-51 205.7 252 65.9
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 6.4e-51 205.3 229 57.6
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 1.3e-43 181.0 237 58.2
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 2.9e-43 179.9 112 82.1
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 1.1e-42 177.9 196 59.2
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 2.3e-40 170.2 112 76.8
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 8.6e-40 168.3 112 78.6
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 8.6e-40 168.3 112 75.0
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.5e-39 166.8 112 78.6
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.3e-39 166.0 112 78.6
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.2e-38 164.5 112 72.3
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 3.6e-38 162.9 124 67.7
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.6e-38 162.9 233 50.6
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.2e-38 162.2 112 76.8
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.3e-35 154.5 187 61.5
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 7.1e-34 148.7 239 47.3
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 1.2e-33 147.9 234 49.1
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 2.5e-31 140.2 113 68.1
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 4.3e-31 139.4 150 73.3
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.2e-28 131.3 68 91.2
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 2.9e-27 126.7 68 88.2
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 3.8e-27 126.3 68 89.7
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 1.9e-26 124.0 68 85.3
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 2.3e-24 117.1 137 61.3
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 5.1e-24 115.9 69 81.2
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 8.6e-24 115.2 151 65.6
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 1.9e-23 114.0 70 80.0
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 2.9e-19 100.1 224 33.5
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 3.8e-19 99.8 66 72.7
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 3.8e-19 99.8 70 68.6
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 2.1e-17 94.0 237 37.6
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 1.0e-16 91.7 61 72.1
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 3.9e-16 89.7 66 66.7
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 6.6e-16 89.0 44 95.5
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 1.9e-15 87.4 56 78.6
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 4.2e-10 69.7 64 59.4
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 1.5e-07 61.2 45 60.0
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 2.1e-06 57.4 55 49.1


User provided reference genes

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