Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0349g0573951 Helianthus annuus HOM05D001987 ORTHO05D004018 1.2e-22 109.0 54 100.0
HanXRQChr00c0557g0575721 Helianthus annuus HOM05D001987 ORTHO05D004018 1.2e-22 109.0 54 100.0
HanXRQChr00c0593g0576391 Helianthus annuus HOM05D001987 ORTHO05D004018 1.2e-22 109.0 54 100.0
HanXRQChr01g0020191 Helianthus annuus HOM05D001987 ORTHO05D004018 1.2e-22 109.0 54 100.0
HanXRQChr04g0127461 Helianthus annuus HOM05D001987 ORTHO05D004018 1.2e-22 109.0 54 100.0
HanXRQChr05g0152551 Helianthus annuus HOM05D001987 ORTHO05D004018 1.2e-22 109.0 54 100.0
HanXRQChr10g0284411 Helianthus annuus HOM05D001987 ORTHO05D004018 1.2e-22 109.0 54 100.0
HanXRQChr10g0318031 Helianthus annuus HOM05D001987 ORTHO05D004018 1.2e-22 109.0 54 100.0
HanXRQChr11g0321121 Helianthus annuus HOM05D001987 ORTHO05D004018 1.2e-22 109.0 54 100.0
HanXRQChr11g0326991 Helianthus annuus HOM05D001987 ORTHO05D004018 1.2e-22 109.0 54 100.0
HanXRQChr12g0369881 Helianthus annuus HOM05D001987 ORTHO05D004018 1.2e-22 109.0 54 100.0
HanXRQChr16g0530211 Helianthus annuus HOM05D001987 ORTHO05D004018 1.2e-22 109.0 54 100.0
HanXRQCPg0580211 Helianthus annuus HOM05D001987 ORTHO05D004018 1.2e-22 109.0 54 100.0
Lj2C1237T35 Lonicera japonica HOM05D001987 ORTHO05D004018 5.7e-22 106.7 54 96.3
DCAR_032523 Daucus carota HOM05D001987 ORTHO05D004018 7.5e-22 106.3 54 96.3
Atru.chr11.441 Acer truncatum HOM05D001987 ORTHO05D004018 1.7e-21 105.1 54 94.4
Lalb_Chr03g0039341 Lupinus albus HOM05D001987 ORTHO05D004018 2.8e-21 104.4 54 94.4
PGR111G0010 Punica granatum HOM05D001987 ORTHO05D004018 2.8e-21 104.4 54 94.4
HanXRQChr11g0345301 Helianthus annuus HOM05D001987 ORTHO05D004018 3.7e-21 104.0 54 96.3
Migut.D01329 Erythranthe guttata HOM05D001987 ORTHO05D004018 4.8e-21 103.6 54 94.4
Solyc00g500032.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 4.8e-21 103.6 52 96.2
Solyc00g500077.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 4.8e-21 103.6 52 96.2
QL93p1043_0023 Quercus lobata HOM05D001987 ORTHO05D004018 6.3e-21 103.2 53 90.6
LjContig00318g0015359 Lotus japonicus HOM05D001987 ORTHO05D004018 1.4e-20 102.1 54 90.7
SGA_v2.0_scaffold3325G54315 Striga asiatica HOM05D001987 ORTHO05D004018 1.4e-20 102.1 53 92.5
Gohir.1Z049902 Gossypium hirsutum HOM05D001987 ORTHO05D004018 3.1e-20 100.9 54 90.7
Medtr1779s0010 Medicago truncatula HOM05D001987 ORTHO05D004018 3.1e-20 100.9 54 90.7
EL10As12g24036 Beta vulgaris HOM05D001987 ORTHO05D004018 4.1e-20 100.5 54 90.7
Ah.10g027330 Amaranthus hybridus HOM05D001987 ORTHO05D004018 5.4e-20 100.1 54 88.9
Ah.10g027450 Amaranthus hybridus HOM05D001987 ORTHO05D004018 5.4e-20 100.1 54 88.9
Ah.10g028990 Amaranthus hybridus HOM05D001987 ORTHO05D004018 5.4e-20 100.1 54 88.9
MELO3C000108.2 Cucumis melo HOM05D001987 ORTHO05D004018 5.4e-20 100.1 54 90.7
Nitab4.5_0011882g0020 Nicotiana tabacum HOM05D000964 ORTHO05D001488 5.4e-20 100.1 52 90.4
unitig_91.g26513 Utricularia gibba HOM05D001987 ORTHO05D004018 5.4e-20 100.1 54 90.7
arahy.Tifrunner.gnm1.ann1.4JG1UT Arachis hypogaea HOM05D001987 ORTHO05D004018 7.0e-20 99.8 52 92.3
arahy.Tifrunner.gnm1.ann1.E2JJBF Arachis hypogaea HOM05D001987 ORTHO05D004018 7.0e-20 99.8 52 92.3
Sc25g0002060 Simmondsia chinensis HOM05D001987 ORTHO05D004018 7.0e-20 99.8 54 88.9
Medtr2g087560 Medicago truncatula HOM05D001987 ORTHO05D004018 1.2e-19 99.0 52 90.4
Medtr4g034750 Medicago truncatula HOM05D001987 ORTHO05D004018 1.2e-19 99.0 52 90.4
AL1G67310 Arabidopsis lyrata HOM05D001987 ORTHO05D004018 1.6e-19 98.6 52 90.4
AL2G20540 Arabidopsis lyrata HOM05D001987 ORTHO05D004018 1.6e-19 98.6 52 90.4
ATCG00790 Arabidopsis thaliana HOM05D001987 ORTHO05D004018 1.6e-19 98.6 52 90.4
BNapus_Darmor_BZH_scaffold_253p00360 Brassica napus HOM05D001987 ORTHO05D004018 1.6e-19 98.6 52 90.4
C03p38120 Brassica napus HOM05D001987 ORTHO05D004018 1.6e-19 98.6 52 90.4
BolSC29t60531H Brassica oleracea HOM05D001987 ORTHO05D004018 1.6e-19 98.6 52 90.4
BolSC29t60612H Brassica oleracea HOM05D001987 ORTHO05D004018 1.6e-19 98.6 52 90.4
BolSC35t60672H Brassica oleracea HOM05D001987 ORTHO05D004018 1.6e-19 98.6 52 90.4
BolSC49t61161H Brassica oleracea HOM05D001987 ORTHO05D004018 1.6e-19 98.6 52 90.4
Sed0015467 Sechium edule HOM05D001987 ORTHO05D004018 1.6e-19 98.6 54 87.0
EL10Ac5g11671 Beta vulgaris HOM05D001987 ORTHO05D004018 2.0e-19 98.2 54 88.9
Gohir.A12G024600 Gossypium hirsutum HOM05D001987 ORTHO05D004018 3.5e-19 97.4 53 86.8
Lalb_Chr13g0291611 Lupinus albus HOM05D001987 ORTHO05D004018 3.5e-19 97.4 54 85.2
Nn002s41363 Nelumbo nucifera HOM05D001987 ORTHO05D004018 3.5e-19 97.4 54 85.2
Nn021s41520 Nelumbo nucifera HOM05D001987 ORTHO05D004018 3.5e-19 97.4 54 85.2
Nn070s42373 Nelumbo nucifera HOM05D001987 ORTHO05D004018 3.5e-19 97.4 54 85.2
Psat0s1446g0200 Pisum sativum HOM05D001987 ORTHO05D004018 3.5e-19 97.4 52 88.5
RcHm_v2.0_Chr2g0118571 Rosa chinensis HOM05D001987 ORTHO05D004018 5.9e-19 96.7 52 86.5
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 7.7e-19 96.3 54 81.5
Medtr0002s0140 Medicago truncatula HOM05D008107 ORTHO05D004018 7.7e-19 96.3 52 88.5
Nitab4.5_0007104g0030 Nicotiana tabacum HOM05D001987 ORTHO05D004018 7.7e-19 96.3 52 88.5
TAR375G0860 Trochodendron aralioides HOM05D001987 ORTHO05D004018 7.7e-19 96.3 54 85.2
Gohir.A12G178655 Gossypium hirsutum HOM05D001987 ORTHO05D004018 1.0e-18 95.9 51 88.2
Psat5g096040 Pisum sativum HOM05D001987 ORTHO05D004018 2.9e-18 94.4 52 86.5
BraSC58t46443Z Brassica rapa HOM05D001987 ORTHO05D004018 3.8e-18 94.0 53 88.7
PSO548G0086 Papaver somniferum HOM05D001987 ORTHO05D004018 3.8e-18 94.0 52 84.6
Eucgr.A01256 Eucalyptus grandis HOM05D001987 ORTHO05D004018 1.1e-17 92.4 54 81.5
Gohir.A05G144450 Gossypium hirsutum HOM05D001987 ORTHO05D004018 1.1e-17 92.4 54 85.2
Hund26845 Selenicereus undatus HOM05D001987 ORTHO05D004018 1.9e-17 91.7 54 85.2
Hund28045 Selenicereus undatus HOM05D001987 ORTHO05D004018 1.9e-17 91.7 54 85.2
Hund29038 Selenicereus undatus HOM05D001987 ORTHO05D004018 1.9e-17 91.7 54 85.2
Hund29684 Selenicereus undatus HOM05D001987 ORTHO05D004018 1.9e-17 91.7 54 85.2
CARHR287450 Cardamine hirsuta HOM05D001987 ORTHO05D004018 9.5e-17 89.4 52 80.8
Solyc00g500154.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 1.6e-16 88.6 52 86.5
ATR0424G001 Amborella trichopoda HOM05D001987 ORTHO05D004018 8.0e-16 86.3 50 78.0
Solyc10g006910.3 Solanum lycopersicum HOM05D001987 ORTHO05D004018 1.0e-15 85.9 45 86.7
Ciclev10021160m.g Citrus clementina HOM05D001987 ORTHO05D004018 1.4e-15 85.5 53 73.6
AL2G21740 Arabidopsis lyrata HOM05D001987 ORTHO05D004018 1.8e-15 85.1 46 87.0
Thhalv10018971m.g Eutrema salsugineum HOM05D001987 ORTHO05D004018 1.8e-15 85.1 52 78.8
Carub.0004s0981 Capsella rubella HOM05D001987 ORTHO05D004018 3.0e-15 84.3 52 69.2
Gohir.D01G102151 Gossypium hirsutum HOM05D001987 ORTHO05D004018 3.0e-15 84.3 45 91.1
Hund08207 Selenicereus undatus HOM05D001987 ORTHO05D004018 3.0e-15 84.3 52 78.8
CiPaw.03G280800 Carya illinoinensis HOM05D001987 ORTHO05D004018 4.0e-15 84.0 50 74.0
Lsat_1_v5_gn_4_106021 Lactuca sativa HOM05D001987 ORTHO05D004018 4.0e-15 84.0 52 80.8
Os11g0269100 Oryza sativa ssp. japonica HOM05D001987 ORTHO05D004018 4.0e-15 84.0 48 83.3
AT2G28815 Arabidopsis thaliana HOM05D001987 ORTHO05D004018 5.2e-15 83.6 52 71.2
AL4G23360 Arabidopsis lyrata HOM05D001987 ORTHO05D004018 8.9e-15 82.8 51 72.5
BolSC35t60727H Brassica oleracea HOM05D001987 ORTHO05D004018 8.9e-15 82.8 42 92.9
FAN21G1218 Fragaria x ananassa HOM05D001987 ORTHO05D004018 1.2e-14 82.4 54 68.5
BolSC56t61246H Brassica oleracea HOM05D001987 ORTHO05D004018 2.6e-14 81.3 42 90.5
Psat6g191040 Pisum sativum HOM05D001987 ORTHO05D004018 3.4e-14 80.9 51 76.5
BcaB03g14981 Brassica carinata HOM05D001987 ORTHO05D004018 5.7e-14 80.1 52 67.3
BcaC08g46689 Brassica carinata HOM05D001987 ORTHO05D004018 5.7e-14 80.1 52 67.3
A07p38510 Brassica napus HOM05D001987 ORTHO05D004018 5.7e-14 80.1 52 67.3
C06p46690 Brassica napus HOM05D001987 ORTHO05D004018 5.7e-14 80.1 52 67.3
BraA07t31411Z Brassica rapa HOM05D001987 ORTHO05D004018 5.7e-14 80.1 52 67.3
CARHR127990 Cardamine hirsuta HOM05D001987 ORTHO05D004018 5.7e-14 80.1 49 71.4
Gorai.004G166700 Gossypium raimondii HOM05D001987 ORTHO05D004018 7.5e-14 79.7 44 86.4
Haze_16657 Corylus avellana HOM05D001987 ORTHO05D004018 2.2e-13 78.2 51 70.6
Ciclev10024383m.g Citrus clementina HOM05D001987 ORTHO05D004018 2.8e-13 77.8 48 77.1
Medtr0002s0780 Medicago truncatula HOM05D001987 ORTHO05D004018 2.8e-13 77.8 41 87.8
RcHm_v2.0_Chr5g0031171 Rosa chinensis HOM05D001987 ORTHO05D004018 2.8e-13 77.8 54 66.7
ClCG11G017160 Citrullus lanatus HOM05D000964 ORTHO05D001488 4.9e-13 77.0 39 92.3
FvH4_3g18440 Fragaria vesca HOM05D001987 ORTHO05D004018 4.9e-13 77.0 54 66.7
FAN11G2273 Fragaria x ananassa HOM05D001987 ORTHO05D004018 4.9e-13 77.0 54 66.7
FAN16G3148 Fragaria x ananassa HOM05D001987 ORTHO05D004018 4.9e-13 77.0 54 66.7
FAN25G2706 Fragaria x ananassa HOM05D001987 ORTHO05D004018 4.9e-13 77.0 54 66.7
Gohir.1Z049934 Gossypium hirsutum HOM05D001987 ORTHO05D004018 4.9e-13 77.0 39 92.3
SalBow6G6095 Salvia bowleyana HOM05D001987 ORTHO05D004018 8.3e-13 76.3 43 79.1
PSO675G5880 Papaver somniferum HOM05D001987 ORTHO05D004018 1.1e-12 75.9 51 68.6
PSO675G6514 Papaver somniferum HOM05D001987 ORTHO05D004018 1.1e-12 75.9 51 68.6
SEGI_04734 Sequoiadendron giganteum HOM05D000445 ORTHO05D004018 1.1e-12 75.9 54 70.4
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 1.1e-12 75.9 54 70.4
SEGI_15837 Sequoiadendron giganteum HOM05D001987 ORTHO05D004018 1.1e-12 75.9 54 70.4
Gohir.A03G162750 Gossypium hirsutum HOM05D001987 ORTHO05D004018 1.4e-12 75.5 44 79.5
ECA236G3336 Erigeron canadensis HOM05D001987 ORTHO05D004018 3.2e-12 74.3 51 68.6
Haze_07953 Corylus avellana HOM05D001987 ORTHO05D004018 7.0e-12 73.2 51 64.7
Nn1g01958 Nelumbo nucifera HOM05D001987 ORTHO05D004018 7.0e-12 73.2 46 76.1
SMO086G0056 Selaginella moellendorffii HOM05D001987 ORTHO05D004018 1.2e-11 72.4 50 70.0
Hund30390 Selenicereus undatus HOM05D001987 ORTHO05D004018 1.2e-11 72.4 52 63.5
Hund30392 Selenicereus undatus HOM05D001987 ORTHO05D004018 1.2e-11 72.4 52 63.5
Sopen08g010250 Solanum pennellii HOM05D001987 ORTHO05D004018 2.7e-11 71.2 34 91.2
Lsat_1_v5_gn_8_92120 Lactuca sativa HOM05D001987 ORTHO05D004018 4.5e-11 70.5 51 64.7
Gorai.008G079300 Gossypium raimondii HOM05D001987 ORTHO05D004018 5.9e-11 70.1 39 84.6
Aqoxy5G00594 Aquilegia oxysepala HOM05D001987 ORTHO05D004018 7.8e-11 69.7 50 64.0
HanXRQChr06g0172541 Helianthus annuus HOM05D001987 ORTHO05D004018 7.8e-11 69.7 51 60.8
EL10Ac4g10036 Beta vulgaris HOM05D001987 ORTHO05D004018 3.9e-10 67.4 52 55.8
Ah.06g195180 Amaranthus hybridus HOM05D001987 ORTHO05D004018 5.0e-10 67.0 52 55.8
Gorai.002G152200 Gossypium raimondii HOM05D001987 ORTHO05D004018 1.1e-09 65.9 40 80.0
Solyc09g050065.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 1.5e-09 65.5 41 78.0
Gohir.D12G072201 Gossypium hirsutum HOM05D001987 ORTHO05D004018 2.5e-09 64.7 38 81.6
Lsat_1_v5_gn_5_50441 Lactuca sativa HOM05D000964 ORTHO05D001488 7.3e-09 63.2 32 87.5
Ciclev10004001m.g Citrus clementina HOM05D001987 ORTHO05D004018 2.8e-08 61.2 29 93.1
Hund04058 Selenicereus undatus HOM05D001987 ORTHO05D004018 8.0e-08 59.7 37 83.8
Gohir.A05G396300 Gossypium hirsutum HOM05D001987 ORTHO05D004018 3.1e-07 57.8 26 96.2
Hund10099 Selenicereus undatus HOM05D001987 ORTHO05D004018 3.1e-07 57.8 32 81.2
Hma1.2p1_0818F.1_g223310 Hydrangea macrophylla HOM05D000631 ORTHO05D004047 4.0e-07 57.4 57 50.9
Medtr0702s0030 Medicago truncatula HOM05D001987 ORTHO05D004018 6.8e-07 56.6 27 88.9
Medtr8g081460 Medicago truncatula HOM05D001987 ORTHO05D004018 6.8e-07 56.6 27 88.9
Gohir.D01G121380 Gossypium hirsutum HOM05D001987 ORTHO05D004018 8.9e-07 56.2 40 70.0
HanXRQChr15g0486801 Helianthus annuus HOM05D001987 ORTHO05D004018 1.2e-06 55.8 27 92.6
Mapoly0052s0079 Marchantia polymorpha HOM05D001987 ORTHO05D004018 1.2e-06 55.8 36 72.2
Gohir.D08G014666 Gossypium hirsutum HOM05D001987 ORTHO05D004018 9.8e-06 52.8 27 85.2


User provided reference genes

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