Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0136281 Helianthus annuus HOM05D003530 ORTHO05D004017 1.0e-68 263.5 142 100.0
Lsat_1_v5_gn_2_91740 Lactuca sativa HOM05D003530 ORTHO05D004017 8.4e-47 190.7 142 81.7
Lsat_1_v5_gn_4_182901 Lactuca sativa HOM05D003530 ORTHO05D004017 5.3e-41 171.4 139 75.5
ECA240G2852 Erigeron canadensis HOM05D003530 ORTHO05D004017 1.3e-39 166.8 140 71.4
HanXRQChr07g0198851 Helianthus annuus HOM05D003530 ORTHO05D004017 5.0e-39 164.9 141 72.3
Dinv35079 Davidia involucrata HOM05D003530 ORTHO05D004017 3.2e-38 162.2 139 66.9
Nitab4.5_0008510g0020 Nicotiana tabacum HOM05D003530 ORTHO05D004017 7.2e-38 161.0 139 73.4
Dinv33477 Davidia involucrata HOM05D003530 ORTHO05D004017 2.7e-37 159.1 139 67.6
Sopen02g031490 Solanum pennellii HOM05D003530 ORTHO05D004017 1.0e-36 157.1 140 69.3
PGSC0003DMG400000487 Solanum tuberosum HOM05D003530 ORTHO05D004017 1.0e-36 157.1 140 67.9
Solyc02g086730.3 Solanum lycopersicum HOM05D003530 ORTHO05D004017 1.3e-36 156.8 140 68.6
PGSC0003DMG400000488 Solanum tuberosum HOM05D003530 ORTHO05D004017 1.3e-36 156.8 140 68.6
Actinidia35752 Actinidia chinensis HOM05D003530 ORTHO05D004017 8.7e-36 154.1 139 67.6
Sopen02g031500 Solanum pennellii HOM05D003530 ORTHO05D004017 2.5e-35 152.5 137 67.2
Hma1.2p1_0993F.1_g245370 Hydrangea macrophylla HOM05D003530 ORTHO05D004017 4.3e-35 151.8 142 66.9
Solyc02g086740.1 Solanum lycopersicum HOM05D003530 ORTHO05D004017 2.8e-34 149.1 137 66.4
Nitab4.5_0009062g0010 Nicotiana tabacum HOM05D003530 ORTHO05D004017 4.1e-33 145.2 137 66.4
TAR622G1176 Trochodendron aralioides HOM05D003530 ORTHO05D004017 5.3e-33 144.8 143 60.8
Hma1.2p1_0858F.1_g229290 Hydrangea macrophylla HOM05D003530 ORTHO05D004017 9.1e-33 144.1 141 63.8
Oeu014862.1 Olea europaea HOM05D003530 ORTHO05D004017 2.0e-32 142.9 134 64.2
Oeu054688.1 Olea europaea HOM05D003530 ORTHO05D004017 3.8e-31 138.7 143 60.1
SalBow7G4259 Salvia bowleyana HOM05D003530 ORTHO05D004017 3.8e-31 138.7 139 65.5
Gorai.001G263100 Gossypium raimondii HOM05D003530 ORTHO05D004017 6.5e-31 137.9 141 59.6
Nitab4.5_0003505g0030 Nicotiana tabacum HOM05D003530 ORTHO05D004017 6.5e-31 137.9 138 63.0
Gohir.D07G228100 Gossypium hirsutum HOM05D003530 ORTHO05D004017 1.4e-30 136.7 141 58.9
Lju41C36T20 Lonicera japonica HOM05D003530 ORTHO05D004017 1.4e-30 136.7 139 62.6
Nitab4.5_0005820g0010 Nicotiana tabacum HOM05D003530 ORTHO05D004017 1.4e-30 136.7 112 70.5
COL.COLO4_29002 Corchorus olitorius HOM05D003530 ORTHO05D004017 1.2e-29 133.7 144 59.7
Migut.H00104 Erythranthe guttata HOM05D003530 ORTHO05D004017 1.2e-29 133.7 140 64.3
Nitab4.5_0004321g0010 Nicotiana tabacum HOM05D003530 ORTHO05D004017 1.6e-29 133.3 138 61.6
Gohir.A07G221400 Gossypium hirsutum HOM05D003530 ORTHO05D004017 2.7e-29 132.5 141 57.4
Nn3g16848 Nelumbo nucifera HOM05D003530 ORTHO05D004017 2.7e-29 132.5 144 56.2
Peaxi162Scf00700g00054 Petunia axillaris HOM05D003530 ORTHO05D004017 2.7e-29 132.5 141 61.0
Ah.12g054660 Amaranthus hybridus HOM05D003530 ORTHO05D004017 1.8e-28 129.8 141 58.2
Sed0013614 Sechium edule HOM05D003530 ORTHO05D004017 2.3e-28 129.4 137 58.4
unitig_62.g23149 Utricularia gibba HOM05D003530 ORTHO05D004017 2.3e-28 129.4 138 60.1
Cc07_g02040 Coffea canephora HOM05D003530 ORTHO05D004017 3.0e-28 129.0 144 61.1
CiPaw.04G026100 Carya illinoinensis HOM05D003530 ORTHO05D004017 3.9e-28 128.6 138 56.5
DCAR_021694 Daucus carota HOM05D003530 ORTHO05D004017 5.1e-28 128.3 141 61.0
FAN05G3949 Fragaria x ananassa HOM05D003530 ORTHO05D004017 6.7e-28 127.9 139 59.0
FAN09G0266 Fragaria x ananassa HOM05D003530 ORTHO05D004017 6.7e-28 127.9 139 58.3
Thecc.04G011600 Theobroma cacao HOM05D003530 ORTHO05D004017 1.1e-27 127.1 146 57.5
RcHm_v2.0_Chr2g0172281 Rosa chinensis HOM05D003530 ORTHO05D004017 1.5e-27 126.7 139 56.8
FvH4_6g50910 Fragaria vesca HOM05D003530 ORTHO05D004017 2.0e-27 126.3 140 57.9
FAN02G4450 Fragaria x ananassa HOM05D003530 ORTHO05D004017 2.0e-27 126.3 139 58.3
FAN14G3916 Fragaria x ananassa HOM05D003530 ORTHO05D004017 2.0e-27 126.3 140 57.9
Sc03g0011050 Simmondsia chinensis HOM05D003530 ORTHO05D004017 2.6e-27 125.9 137 57.7
MELO3C021553.2 Cucumis melo HOM05D003530 ORTHO05D004017 7.4e-27 124.4 142 57.7
Sed0017530 Sechium edule HOM05D003530 ORTHO05D004017 7.4e-27 124.4 139 57.6
MD09G1031000 Malus domestica HOM05D003530 ORTHO05D004017 9.7e-27 124.0 141 56.7
Rhsim10G0020100 Rhododendron simsii HOM05D003530 ORTHO05D004017 1.3e-26 123.6 144 60.4
Sabra16G0225800 Salix brachista HOM05D003530 ORTHO05D004017 1.3e-26 123.6 136 53.7
VMungo1127G1762 Vigna mungo HOM05D003530 ORTHO05D004017 2.8e-26 122.5 143 54.5
arahy.Tifrunner.gnm1.ann1.816STY Arachis hypogaea HOM05D003530 ORTHO05D004017 3.7e-26 122.1 141 56.7
Cfa007412 Carpinus fangiana HOM05D003530 ORTHO05D004017 3.7e-26 122.1 138 52.2
Gohir.A08G009500 Gossypium hirsutum HOM05D003530 ORTHO05D004017 3.7e-26 122.1 142 58.5
Manes.11G104900 Manihot esculenta HOM05D003530 ORTHO05D004017 3.7e-26 122.1 140 55.7
EL10Ac4g08602 Beta vulgaris HOM05D003530 ORTHO05D004017 6.3e-26 121.3 142 55.6
Gorai.004G014100 Gossypium raimondii HOM05D003530 ORTHO05D004017 6.3e-26 121.3 142 57.7
Sabra16G0225100 Salix brachista HOM05D003530 ORTHO05D004017 8.2e-26 120.9 137 54.0
Gohir.D08G019600 Gossypium hirsutum HOM05D003530 ORTHO05D004017 1.1e-25 120.6 142 57.7
Glyma.11G099300 Glycine max HOM05D003530 ORTHO05D004017 1.8e-25 119.8 142 53.5
Gohir.A05G358400 Gossypium hirsutum HOM05D003530 ORTHO05D004017 1.8e-25 119.8 145 56.6
TWI12G0626 Tripterygium wilfordii HOM05D003530 ORTHO05D004017 1.8e-25 119.8 113 61.9
CiPaw.03G039700 Carya illinoinensis HOM05D003530 ORTHO05D004017 4.1e-25 118.6 139 54.7
Lalb_Chr06g0175931 Lupinus albus HOM05D003530 ORTHO05D004017 4.1e-25 118.6 138 54.3
Aqoxy3G02924 Aquilegia oxysepala HOM05D003530 ORTHO05D004017 9.1e-25 117.5 139 55.4
Peaxi162Scf00129g10129 Petunia axillaris HOM05D001272 ORTHO05D001843 9.1e-25 117.5 87 80.5
Cpa.g.sc39.100 Carica papaya HOM05D003530 ORTHO05D004017 1.2e-24 117.1 134 55.2
Potri.001G346100 Populus trichocarpa HOM05D003530 ORTHO05D004017 1.2e-24 117.1 137 54.7
Rhsim08G0053400 Rhododendron simsii HOM05D003530 ORTHO05D004017 1.2e-24 117.1 137 55.5
Haze_14690 Corylus avellana HOM05D003530 ORTHO05D004017 1.5e-24 116.7 141 51.8
Gohir.D04G055700 Gossypium hirsutum HOM05D003530 ORTHO05D004017 1.5e-24 116.7 145 55.2
Manes.04G063300 Manihot esculenta HOM05D003530 ORTHO05D004017 2.0e-24 116.3 139 54.7
Gorai.012G062600 Gossypium raimondii HOM05D003530 ORTHO05D004017 2.6e-24 115.9 137 54.7
MD17G1032900 Malus domestica HOM05D003530 ORTHO05D004017 2.6e-24 115.9 139 53.2
Glyma.12G025400 Glycine max HOM05D003530 ORTHO05D004017 4.5e-24 115.2 144 51.4
Phvul.011G027700 Phaseolus vulgaris HOM05D003530 ORTHO05D004017 4.5e-24 115.2 141 53.9
Duzib147G0262 Durio zibethinus HOM05D003530 ORTHO05D004017 1.0e-23 114.0 147 52.4
CDE10G0273 Ceratophyllum demersum HOM05D003530 ORTHO05D004017 1.3e-23 113.6 137 53.3
LjContig00484g0021782 Lotus japonicus HOM05D003530 ORTHO05D004017 1.7e-23 113.2 141 54.6
PGR142G3122 Punica granatum HOM05D003530 ORTHO05D004017 2.2e-23 112.8 143 53.1
SalBow1G5378 Salvia bowleyana HOM05D003530 ORTHO05D004017 2.2e-23 112.8 140 53.6
Aa31LG2G4880 Aethionema arabicum HOM05D003530 ORTHO05D004017 2.9e-23 112.5 141 50.4
Lalb_Chr17g0337251 Lupinus albus HOM05D003530 ORTHO05D004017 3.8e-23 112.1 142 53.5
Sed0027802 Sechium edule HOM05D003530 ORTHO05D004017 3.8e-23 112.1 140 52.1
CsaV3_3G042510 Cucumis sativus L. HOM05D003530 ORTHO05D004017 1.1e-22 110.5 142 51.4
CANSAT64G2824 Cannabis sativa HOM05D003530 ORTHO05D004017 1.4e-22 110.2 148 50.0
Ciclev10016852m.g Citrus clementina HOM05D003530 ORTHO05D004017 1.4e-22 110.2 113 60.2
Lj2g0009781 Lotus japonicus HOM05D003530 ORTHO05D004017 1.4e-22 110.2 137 53.3
BcaC06g30958 Brassica carinata HOM05D003530 ORTHO05D004017 1.9e-22 109.8 143 51.0
QL02p075946 Quercus lobata HOM05D003530 ORTHO05D004017 1.9e-22 109.8 142 54.9
ClCG10G014140 Citrullus lanatus HOM05D003530 ORTHO05D004017 2.5e-22 109.4 140 50.0
DCAR_015053 Daucus carota HOM05D003530 ORTHO05D004017 4.2e-22 108.6 91 68.1
PSO478G3901 Papaver somniferum HOM05D003530 ORTHO05D004017 4.2e-22 108.6 136 50.0
Prupe.3G286600 Prunus persica HOM05D003530 ORTHO05D004017 4.2e-22 108.6 139 50.4
PSO017G1080 Papaver somniferum HOM05D003530 ORTHO05D004017 5.5e-22 108.2 136 50.0
AT3G27830 Arabidopsis thaliana HOM05D003530 ORTHO05D004017 7.2e-22 107.8 145 51.7
SGA_v2.0_scaffold30G12445 Striga asiatica HOM05D003530 ORTHO05D004017 7.2e-22 107.8 139 52.5
Aa31LG9G1280 Aethionema arabicum HOM05D003530 ORTHO05D004017 1.2e-21 107.1 141 49.6
Migut.K01378 Erythranthe guttata HOM05D003530 ORTHO05D004017 2.1e-21 106.3 137 54.7
unitig_52.g17666 Utricularia gibba HOM05D003530 ORTHO05D004017 2.1e-21 106.3 86 72.1
SGA_v2.0_scaffold40G15640 Striga asiatica HOM05D003530 ORTHO05D004017 3.6e-21 105.5 109 60.6
MELO3C009965.2 Cucumis melo HOM05D003530 ORTHO05D004017 1.0e-20 104.0 147 51.7
BraA09t35991Z Brassica rapa HOM05D003530 ORTHO05D004017 1.4e-20 103.6 140 49.3
Medtr6g006060 Medicago truncatula HOM05D003530 ORTHO05D004017 1.4e-20 103.6 141 53.2
AT3G27850 Arabidopsis thaliana HOM05D003530 ORTHO05D004017 2.3e-20 102.8 140 49.3
ClCG09G019050 Citrullus lanatus HOM05D003530 ORTHO05D004017 3.0e-20 102.4 143 49.7
Thhalv10004960m.g Eutrema salsugineum HOM05D003530 ORTHO05D004017 6.7e-20 101.3 144 49.3
BcaC06g30959 Brassica carinata HOM05D003530 ORTHO05D004017 1.1e-19 100.5 145 47.6
Thhalv10004964m.g Eutrema salsugineum HOM05D003530 ORTHO05D004017 1.1e-19 100.5 144 50.7
BcaB07g30141 Brassica carinata HOM05D003530 ORTHO05D004017 2.0e-19 99.8 144 45.8
CDE10G0897 Ceratophyllum demersum HOM05D003530 ORTHO05D004017 2.6e-19 99.4 137 49.6
C02p54500 Brassica napus HOM05D003530 ORTHO05D004017 3.3e-19 99.0 144 45.8
BcaC03g17492 Brassica carinata HOM05D003530 ORTHO05D004017 7.4e-19 97.8 144 45.1
BolC2t11513H Brassica oleracea HOM05D003530 ORTHO05D004017 7.4e-19 97.8 144 45.1
BcaC06g33781 Brassica carinata HOM05D003530 ORTHO05D004017 9.7e-19 97.4 143 46.2
C07p37000 Brassica napus HOM05D003530 ORTHO05D004017 9.7e-19 97.4 143 46.2
BolC7t44212H Brassica oleracea HOM05D003530 ORTHO05D004017 9.7e-19 97.4 143 46.2
THA.LOC104823944 Tarenaya hassleriana HOM05D003530 ORTHO05D004017 9.7e-19 97.4 139 48.2
HPP92_005137 Vanilla planifolia HOM05D003530 ORTHO05D004017 9.7e-19 97.4 140 50.0
AL5G17260 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 1.3e-18 97.1 144 47.9
BcaC06g33779 Brassica carinata HOM05D003530 ORTHO05D004017 2.2e-18 96.3 143 45.5
BcaC06g33780 Brassica carinata HOM05D003530 ORTHO05D004017 2.2e-18 96.3 143 45.5
C07p37010 Brassica napus HOM05D003530 ORTHO05D004017 2.2e-18 96.3 143 45.5
BolC7t44213H Brassica oleracea HOM05D003530 ORTHO05D004017 2.2e-18 96.3 143 45.5
PSO063G4512 Papaver somniferum HOM05D003530 ORTHO05D004017 2.2e-18 96.3 141 49.6
THA.LOC104805389 Tarenaya hassleriana HOM05D003530 ORTHO05D004017 2.2e-18 96.3 139 48.9
A06p40870 Brassica napus HOM05D003530 ORTHO05D004017 2.8e-18 95.9 142 44.4
BraA02t08568Z Brassica rapa HOM05D003530 ORTHO05D004017 2.8e-18 95.9 144 44.4
BraA06t27009Z Brassica rapa HOM05D003530 ORTHO05D004017 2.8e-18 95.9 142 44.4
PSO832G4560 Papaver somniferum HOM05D003530 ORTHO05D004017 2.8e-18 95.9 141 48.9
ATR0789G179 Amborella trichopoda HOM05D003530 ORTHO05D004017 3.7e-18 95.5 87 64.4
AL5G17330 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 3.7e-18 95.5 138 46.4
Psat1g056240 Pisum sativum HOM05D003530 ORTHO05D004017 4.8e-18 95.1 139 50.4
Atru.chr6.2226 Acer truncatum HOM05D003530 ORTHO05D004017 6.3e-18 94.7 141 44.0
Atru.chr6.2319 Acer truncatum HOM05D003530 ORTHO05D004017 6.3e-18 94.7 141 44.0
Carub.0005s0637 Capsella rubella HOM05D003530 ORTHO05D004017 6.3e-18 94.7 138 45.7
Lalb_Chr10g0093931 Lupinus albus HOM05D003530 ORTHO05D004017 6.3e-18 94.7 125 50.4
Os05g0568300 Oryza sativa ssp. japonica HOM05D003530 ORTHO05D004017 6.3e-18 94.7 85 61.2
A06p40860 Brassica napus HOM05D003530 ORTHO05D004017 8.2e-18 94.4 140 43.6
BraA06t27008Z Brassica rapa HOM05D003530 ORTHO05D004017 8.2e-18 94.4 140 43.6
CARHR149320 Cardamine hirsuta HOM05D003530 ORTHO05D004017 8.2e-18 94.4 145 46.2
TPR.G27369 Trifolium pratense HOM05D003530 ORTHO05D004017 8.2e-18 94.4 76 75.0
Carub.0005s0635 Capsella rubella HOM05D003530 ORTHO05D004017 1.1e-17 94.0 144 45.8
CARHR149300 Cardamine hirsuta HOM05D003530 ORTHO05D004017 1.8e-17 93.2 145 46.2
A02p35660 Brassica napus HOM05D003530 ORTHO05D004017 2.4e-17 92.8 143 43.4
Lsat_1_v5_gn_2_14440 Lactuca sativa HOM05D003530 ORTHO05D004017 7.0e-17 91.3 62 83.9
Ah.07g200110 Amaranthus hybridus HOM05D003530 ORTHO05D004017 1.2e-16 90.5 60 83.3
A09p03530 Brassica napus HOM05D003530 ORTHO05D004017 1.2e-16 90.5 140 45.0
CSS0007307 Camellia sinensis var. sinensis HOM05D003530 ORTHO05D004017 1.2e-16 90.5 80 66.2
MBI10_g28017_MAGBIO Magnolia biondii HOM05D003530 ORTHO05D004017 1.2e-16 90.5 130 49.2
PGR083G1866 Punica granatum HOM05D003530 ORTHO05D004017 1.2e-16 90.5 139 47.5
QL02p075960 Quercus lobata HOM05D003530 ORTHO05D004017 2.6e-16 89.4 131 47.3
Nitab4.5_0010319g0050 Nicotiana tabacum HOM05D003530 ORTHO05D004017 1.0e-15 87.4 59 88.1
Sp2g16890 Schrenkiella parvula HOM05D003530 ORTHO05D004017 1.0e-15 87.4 147 44.2
GSVIVG01032454001 Vitis vinifera HOM05D003530 ORTHO05D004017 2.9e-15 85.9 136 41.9
Nitab4.5_0006542g0030 Nicotiana tabacum HOM05D003530 ORTHO05D004017 3.8e-15 85.5 62 82.3
SMO356G0309 Selaginella moellendorffii HOM05D003530 ORTHO05D004017 9.4e-14 80.9 76 64.5
Pp3c26_10990 Physcomitrium patens HOM05D003530 ORTHO05D004017 1.2e-13 80.5 86 58.1
Zm00001eb359610 Zea mays HOM05D003530 ORTHO05D004017 2.1e-13 79.7 140 45.0
Pp3c4_24130 Physcomitrium patens HOM05D003530 ORTHO05D004017 8.0e-13 77.8 86 57.0
AT3G27840 Arabidopsis thaliana HOM05D003530 ORTHO05D004017 1.4e-12 77.0 144 38.2
Pp3c25_1440 Physcomitrium patens HOM05D003530 ORTHO05D004017 2.3e-12 76.3 102 46.1
SEGI_29600 Sequoiadendron giganteum HOM05D003530 ORTHO05D004017 3.7e-10 68.9 137 41.6
Pp3c16_2080 Physcomitrium patens HOM05D003530 ORTHO05D004017 4.8e-10 68.6 76 52.6
AL5G17310 Arabidopsis lyrata HOM05D003530 ORTHO05D004017 1.1e-09 67.4 144 36.8
BcaC01g05647 Brassica carinata HOM05D003530 ORTHO05D004017 2.4e-09 66.2 99 40.4
BolC3t14763H Brassica oleracea HOM05D003530 ORTHO05D004017 2.4e-09 66.2 99 40.4
C03p23680 Brassica napus HOM05D003530 ORTHO05D004017 4.1e-09 65.5 99 40.4
BraA03t11271Z Brassica rapa HOM05D003530 ORTHO05D004017 5.3e-09 65.1 99 40.4
Mapoly0071s0038 Marchantia polymorpha HOM05D003530 ORTHO05D004017 7.7e-08 61.2 145 41.4
Pp3c5_2700 Physcomitrium patens HOM05D003530 ORTHO05D004017 1.0e-07 60.8 98 41.8
BcaB01g03824 Brassica carinata HOM05D003530 ORTHO05D004017 1.7e-07 60.1 99 38.4
Zm00001eb157660 Zea mays HOM05D003530 ORTHO05D004017 2.9e-07 59.3 134 39.6
Carub.0005s0636 Capsella rubella HOM05D003530 ORTHO05D004017 5.0e-07 58.5 101 36.6
ATR1156G070 Amborella trichopoda HOM05D003530 ORTHO05D004017 1.1e-06 57.4 128 36.7
TAR374G1092 Trochodendron aralioides HOM05D003530 ORTHO05D004017 1.9e-06 56.6 50 66.0
AUR62037980 Chenopodium quinoa HOM05D003530 ORTHO05D004017 3.2e-06 55.8 131 35.9
PRCOL_00004615 Prasinoderma coloniale HOM05D003530 ORTHO05D004017 4.2e-06 55.5 100 41.0


User provided reference genes

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