Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 2.9e-218 761.9 484 100.0
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 5.8e-158 561.6 501 74.5
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 6.9e-151 538.1 460 77.6
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 3.4e-134 482.6 496 63.3
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 5.1e-130 468.8 403 71.2
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 3.3e-129 466.1 527 63.4
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 5.7e-129 465.3 401 69.8
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 5.7e-129 465.3 439 66.1
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.3e-128 464.2 524 65.8
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 1.7e-128 463.8 504 66.9
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 1.7e-128 463.8 434 65.7
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 3.7e-128 462.6 401 69.3
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 3.7e-128 462.6 438 66.0
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 3.7e-128 462.6 439 65.8
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 1.1e-127 461.1 512 61.3
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 1.4e-127 460.7 519 60.1
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 5.3e-127 458.8 514 62.3
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 7.7e-126 454.9 510 63.3
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 3.8e-125 452.6 404 68.6
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 1.1e-124 451.1 521 61.4
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 3.2e-124 449.5 528 59.8
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 1.2e-123 447.6 538 57.4
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 1.6e-123 447.2 445 60.2
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 2.7e-123 446.4 391 68.5
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 6.1e-123 445.3 497 62.4
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 6.1e-123 445.3 511 58.9
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.8e-122 443.7 486 58.2
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 3.0e-122 443.0 446 61.0
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 1.1e-121 441.0 446 57.4
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 1.5e-121 440.7 475 60.4
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 2.6e-121 439.9 484 63.2
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 3.3e-121 439.5 442 60.0
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 5.7e-121 438.7 442 57.7
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 9.7e-121 438.0 513 58.5
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 3.7e-120 436.0 404 67.6
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 3.1e-119 433.0 534 56.9
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 5.3e-119 432.2 390 66.9
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 1.2e-118 431.0 519 55.5
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 1.6e-118 430.6 443 60.5
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 2.0e-118 430.3 455 65.9
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 2.0e-118 430.3 444 63.7
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.3e-117 427.6 491 63.5
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 2.2e-117 426.8 536 58.8
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 2.2e-117 426.8 506 61.9
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 6.5e-117 425.2 448 57.4
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 1.9e-116 423.7 406 64.8
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 3.2e-116 422.9 447 60.4
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 5.5e-116 422.2 480 59.0
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 7.2e-116 421.8 493 57.8
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 1.2e-115 421.0 402 65.7
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 1.6e-115 420.6 388 66.2
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 1.0e-114 417.9 410 64.6
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 5.2e-114 415.6 393 69.7
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.5e-113 414.1 417 60.2
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 4.4e-113 412.5 439 61.7
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 4.4e-113 412.5 496 60.5
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 5.7e-113 412.1 318 69.8
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 1.7e-112 410.6 467 59.7
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 2.8e-112 409.8 501 59.9
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 1.1e-111 407.9 489 51.5
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 1.1e-111 407.9 404 65.8
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 1.4e-111 407.5 517 61.3
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 4.1e-111 406.0 519 56.8
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 1.2e-110 404.4 419 61.1
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 2.0e-110 403.7 393 64.6
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.5e-110 402.9 435 65.3
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 2.2e-109 400.2 505 57.2
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 6.5e-109 398.7 443 63.2
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 1.5e-108 397.5 374 62.0
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 1.5e-108 397.5 452 62.6
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 1.5e-108 397.5 330 65.2
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 4.2e-108 396.0 339 68.1
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 8.0e-107 391.7 455 54.7
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 3.0e-106 389.8 382 65.4
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 1.2e-105 387.9 438 58.9
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 1.2e-105 387.9 438 58.4
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 6.3e-104 382.1 369 66.9
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 8.3e-104 381.7 409 62.1
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 1.4e-103 380.9 434 55.5
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 1.8e-103 380.6 516 53.1
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 5.4e-103 379.0 465 59.6
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 9.1e-103 378.3 397 59.2
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 1.6e-102 377.5 327 65.1
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 1.6e-102 377.5 630 44.3
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 1.0e-101 374.8 453 54.3
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 3.8e-101 372.9 442 61.3
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 6.6e-101 372.1 364 65.7
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.9e-100 370.5 364 65.9
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 2.5e-100 370.2 377 64.7
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 2.5e-100 370.2 286 67.5
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 3.3e-100 369.8 333 60.7
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 1.6e-99 367.5 386 64.0
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 3.6e-99 366.3 279 70.6
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 1.5e-97 360.9 349 60.5
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 5.9e-94 349.0 397 56.2
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 5.0e-93 345.9 446 51.8
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 1.1e-92 344.7 373 56.6
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 2.3e-90 337.0 368 63.3
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 1.9e-87 327.4 441 48.8
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 1.2e-86 324.7 372 54.6
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 1.2e-86 324.7 372 54.6
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 3.5e-86 323.2 493 45.8
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 3.5e-86 323.2 393 52.7
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 1.0e-85 321.6 238 69.7
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 1.6e-83 314.3 369 57.2
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 8.9e-82 308.5 319 60.5
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 3.4e-81 306.6 250 63.2
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 9.8e-81 305.1 314 52.5
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 1.1e-79 301.6 396 52.0
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 2.3e-77 293.9 454 46.3
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 8.6e-77 292.0 332 60.8
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 1.6e-75 287.7 340 50.3
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 6.8e-74 282.3 360 53.1
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 2.9e-64 250.4 390 43.6
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 1.6e-62 244.6 402 47.8
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 4.6e-62 243.0 207 58.0
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 1.5e-60 238.0 397 41.1
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 9.3e-55 218.8 215 56.7
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.7e-53 214.5 229 51.1
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 1.8e-50 204.5 361 39.1
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.0e-45 188.7 362 39.0
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 6.2e-43 179.5 296 39.2
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 2.7e-38 164.1 195 55.4
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 1.1e-28 132.1 209 49.3
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.1e-23 115.5 74 77.0
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 3.6e-22 110.5 154 61.0
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 4.6e-22 110.2 154 61.0
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 4.6e-22 110.2 154 61.0
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 3.4e-17 94.0 84 60.7
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 5.9e-17 93.2 253 30.8
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 1.4e-10 72.0 93 47.3
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 1.4e-10 72.0 93 47.3
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 1.8e-10 71.6 44 72.7
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 6.5e-08 63.2 73 43.8
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 6.5e-08 63.2 330 23.6
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 5.5e-07 60.1 107 40.2
Lalb_Chr05g0213591 Lupinus albus HOM05D005480 ORTHO05D006735 5.5e-07 60.1 36 80.6
SEGI_21213 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 3.6e-06 57.4 93 43.0


User provided reference genes

Program Settings