Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 2.5e-164 582.0 291 100.0
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 1.3e-149 533.1 291 92.8
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 2.0e-145 519.2 289 88.6
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 4.4e-145 518.1 289 88.9
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 9.3e-143 510.4 291 86.3
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 1.0e-141 506.9 291 85.6
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 4.3e-140 501.5 289 85.1
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 5.6e-140 501.1 290 83.8
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 4.8e-139 498.0 285 86.0
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 1.4e-138 496.5 288 85.4
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 2.4e-138 495.7 290 84.5
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 3.1e-138 495.4 287 84.0
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 3.1e-138 495.4 300 82.3
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 3.1e-138 495.4 287 85.0
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 4.0e-138 495.0 288 85.4
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 9.0e-138 493.8 272 90.1
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 9.0e-138 493.8 291 83.5
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 1.5e-137 493.0 290 83.1
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 2.0e-137 492.7 290 83.1
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 2.6e-137 492.3 288 82.6
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 2.6e-137 492.3 287 84.7
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 3.4e-137 491.9 287 82.6
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 5.8e-137 491.1 291 83.5
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 5.8e-137 491.1 287 83.6
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 9.9e-137 490.3 287 84.7
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 9.9e-137 490.3 287 84.7
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 1.3e-136 490.0 288 84.0
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 1.7e-136 489.6 288 82.6
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 1.7e-136 489.6 292 82.9
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 2.2e-136 489.2 288 84.4
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 2.9e-136 488.8 288 84.0
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 3.8e-136 488.4 288 84.0
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 3.8e-136 488.4 287 82.9
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 8.4e-136 487.3 288 82.3
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 1.1e-135 486.9 291 82.5
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.4e-135 486.5 288 81.6
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 1.4e-135 486.5 290 83.4
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 1.9e-135 486.1 288 83.3
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 1.9e-135 486.1 291 82.8
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 2.4e-135 485.7 287 83.6
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 2.4e-135 485.7 291 82.1
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 3.2e-135 485.3 287 81.9
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 4.2e-135 485.0 287 82.2
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 5.4e-135 484.6 287 83.3
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 9.3e-135 483.8 290 83.8
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 9.3e-135 483.8 287 82.9
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 9.3e-135 483.8 288 82.6
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 9.3e-135 483.8 287 83.3
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 9.3e-135 483.8 291 81.1
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 3.5e-134 481.9 287 82.6
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 6.0e-134 481.1 287 82.2
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 6.0e-134 481.1 291 80.4
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 6.0e-134 481.1 291 80.4
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 6.0e-134 481.1 290 81.4
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 7.9e-134 480.7 284 81.0
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 7.9e-134 480.7 291 80.8
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 7.9e-134 480.7 284 83.8
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 1.3e-133 479.9 291 81.1
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 1.3e-133 479.9 291 80.8
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 1.3e-133 479.9 291 80.1
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.3e-133 479.9 288 80.2
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 2.3e-133 479.2 288 81.6
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.3e-133 479.2 291 80.4
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 3.0e-133 478.8 325 76.6
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 5.1e-133 478.0 291 80.1
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 6.7e-133 477.6 284 80.6
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 6.7e-133 477.6 284 80.3
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 8.7e-133 477.2 290 80.7
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 1.1e-132 476.9 284 80.6
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.5e-132 476.5 288 79.2
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 1.5e-132 476.5 289 82.4
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 3.3e-132 475.3 288 80.2
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 3.3e-132 475.3 288 79.2
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 5.6e-132 474.6 291 81.8
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 9.6e-132 473.8 291 78.0
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 1.6e-131 473.0 288 78.5
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 1.6e-131 473.0 288 78.5
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 1.6e-131 473.0 288 78.5
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 3.7e-131 471.9 288 78.1
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 3.7e-131 471.9 288 78.1
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 4.8e-131 471.5 288 78.5
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 4.8e-131 471.5 291 80.4
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 4.8e-131 471.5 291 80.1
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 1.8e-130 469.5 291 79.4
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 3.1e-130 468.8 291 79.0
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 4.0e-130 468.4 291 80.1
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 5.3e-130 468.0 291 78.7
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 9.0e-130 467.2 291 78.7
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 1.5e-129 466.5 308 76.6
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 2.0e-129 466.1 291 79.4
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 2.6e-129 465.7 292 79.5
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 3.4e-129 465.3 291 78.4
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 3.4e-129 465.3 290 80.0
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 5.8e-129 464.5 288 80.6
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 5.8e-129 464.5 291 78.4
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 9.9e-129 463.8 290 78.6
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 1.7e-128 463.0 291 78.0
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.7e-128 463.0 291 79.4
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 2.2e-128 462.6 291 78.0
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 2.2e-128 462.6 291 78.0
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 2.2e-128 462.6 289 79.9
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 4.9e-128 461.5 284 79.9
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 5.5e-127 458.0 287 78.0
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 5.5e-127 458.0 284 78.5
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 2.7e-126 455.7 284 77.1
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 4.6e-126 454.9 288 76.0
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 7.9e-126 454.1 289 77.9
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 7.9e-126 454.1 284 76.8
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 1.3e-125 453.4 284 77.5
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.3e-125 453.4 291 78.7
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 2.3e-125 452.6 287 77.0
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 5.1e-125 451.4 306 75.2
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 8.7e-125 450.7 291 77.3
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 3.3e-124 448.7 288 75.3
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 1.3e-123 446.8 284 75.4
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.3e-123 446.8 303 75.2
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 2.1e-123 446.0 292 77.1
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 4.8e-123 444.9 259 85.3
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 3.1e-122 442.2 291 76.6
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 1.2e-121 440.3 309 72.5
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 1.5e-121 439.9 284 75.0
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 3.4e-121 438.7 446 56.1
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 5.8e-121 438.0 290 77.6
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 7.6e-121 437.6 291 73.9
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 2.9e-120 435.6 290 74.5
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 3.8e-120 435.3 293 74.1
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.1e-119 433.7 293 73.4
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.9e-119 433.0 293 73.4
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 5.5e-119 431.4 292 73.6
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 9.3e-119 430.6 302 74.5
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 7.9e-118 427.6 309 71.2
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 1.1e-116 423.7 284 73.6
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 2.8e-115 419.1 230 88.3
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 6.9e-114 414.5 253 78.7
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 2.7e-110 402.5 257 77.0
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 3.6e-110 402.1 232 84.9
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 3.3e-108 395.6 295 67.5
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 4.3e-108 395.2 287 65.9
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 8.2e-107 391.0 287 65.2
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.4e-106 390.2 287 64.8
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.8e-106 389.8 287 65.2
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.4e-103 380.2 295 65.8
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 2.1e-102 376.3 230 79.6
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 6.3e-99 364.8 296 65.5
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 2.1e-94 349.7 287 61.0
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 2.9e-88 329.3 285 58.9
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 3.0e-85 319.3 203 78.3
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 1.5e-79 300.4 270 61.5
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 2.3e-77 293.1 287 51.6
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 6.3e-75 285.0 281 52.3
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 1.0e-72 277.7 284 49.3
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 6.6e-72 275.0 162 80.9
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 6.6e-72 275.0 281 49.5
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 2.8e-54 216.5 152 67.8
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 1.2e-52 211.1 151 72.8
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 1.3e-51 207.6 113 89.4
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 3.7e-51 206.1 139 75.5
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 3.2e-26 123.2 82 74.4
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 2.1e-25 120.6 76 80.3
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 1.0e-24 118.2 124 52.4
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 6.6e-24 115.5 152 44.1
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 6.6e-24 115.5 76 77.6
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 1.6e-22 110.9 76 75.0
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 1.5e-20 104.4 52 94.2
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 5.8e-20 102.4 76 65.8
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 1.3e-19 101.3 66 75.8
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 3.8e-19 99.8 77 68.8
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 5.1e-16 89.4 70 61.4
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 6.7e-16 89.0 57 73.7
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 3.4e-12 76.6 58 60.3
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 3.4e-12 76.6 58 60.3
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 1.3e-11 74.7 53 71.7
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 1.8e-08 64.3 59 64.4
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 2.5e-07 60.5 32 87.5
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 7.4e-07 58.9 36 69.4
MD08G1091900 Malus domestica HOM05D004135 ORTHO05D246351 8.2e-06 55.5 37 78.4


User provided reference genes

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