Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 1.1e-47 193.0 94 100.0
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 2.1e-43 178.7 88 96.6
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 1.4e-15 86.3 39 97.4
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 4.1e-15 84.7 39 92.3
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 4.1e-15 84.7 39 94.9
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 1.5e-14 82.8 43 81.4
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 1.5e-14 82.8 39 89.7
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 1.5e-14 82.8 43 81.4
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 2.0e-14 82.4 39 89.7
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 2.6e-14 82.0 39 87.2
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 2.6e-14 82.0 39 87.2
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 2.6e-14 82.0 38 92.1
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 2.6e-14 82.0 39 84.6
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 3.4e-14 81.6 39 84.6
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 4.5e-14 81.3 39 87.2
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 4.5e-14 81.3 39 87.2
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 4.5e-14 81.3 39 87.2
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 4.5e-14 81.3 39 87.2
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 4.5e-14 81.3 39 87.2
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 4.5e-14 81.3 39 87.2
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 5.9e-14 80.9 39 87.2
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 5.9e-14 80.9 39 87.2
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 5.9e-14 80.9 39 89.7
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 5.9e-14 80.9 39 89.7
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 5.9e-14 80.9 39 89.7
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 7.7e-14 80.5 39 84.6
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 7.7e-14 80.5 39 84.6
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 7.7e-14 80.5 43 81.4
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 1.0e-13 80.1 39 87.2
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 1.0e-13 80.1 39 87.2
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 1.0e-13 80.1 39 87.2
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 1.0e-13 80.1 39 87.2
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 1.0e-13 80.1 39 87.2
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 1.0e-13 80.1 39 84.6
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 1.0e-13 80.1 39 84.6
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 1.3e-13 79.7 39 84.6
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 1.3e-13 79.7 39 84.6
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 1.3e-13 79.7 39 84.6
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 1.3e-13 79.7 39 84.6
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 1.3e-13 79.7 39 84.6
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 1.7e-13 79.3 45 75.6
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 1.7e-13 79.3 39 82.1
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 2.2e-13 79.0 39 84.6
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 2.2e-13 79.0 39 84.6
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 2.2e-13 79.0 39 82.1
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 2.2e-13 79.0 39 84.6
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 2.9e-13 78.6 39 84.6
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 2.9e-13 78.6 39 87.2
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 2.9e-13 78.6 39 82.1
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 2.9e-13 78.6 39 84.6
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 2.9e-13 78.6 39 84.6
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 2.9e-13 78.6 39 82.1
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 3.8e-13 78.2 39 84.6
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 3.8e-13 78.2 39 84.6
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 3.8e-13 78.2 39 84.6
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 3.8e-13 78.2 39 84.6
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 5.0e-13 77.8 39 84.6
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 6.5e-13 77.4 39 82.1
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 6.5e-13 77.4 39 82.1
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 6.5e-13 77.4 43 79.1
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 6.5e-13 77.4 39 79.5
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 6.5e-13 77.4 39 82.1
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 6.5e-13 77.4 39 82.1
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 6.5e-13 77.4 39 84.6
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 8.5e-13 77.0 39 82.1
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 8.5e-13 77.0 39 82.1
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 8.5e-13 77.0 39 84.6
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 8.5e-13 77.0 39 82.1
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 8.5e-13 77.0 39 82.1
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 8.5e-13 77.0 39 79.5
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 8.5e-13 77.0 39 82.1
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 1.1e-12 76.6 39 76.9
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 1.1e-12 76.6 38 84.2
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.1e-12 76.6 39 82.1
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 1.1e-12 76.6 39 79.5
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 2.5e-12 75.5 43 76.7
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.5e-12 75.5 43 76.7
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.5e-12 75.5 43 76.7
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.5e-12 75.5 43 76.7
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 2.5e-12 75.5 39 79.5
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 2.5e-12 75.5 39 79.5
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 2.5e-12 75.5 39 79.5
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 4.2e-12 74.7 39 82.1
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 5.5e-12 74.3 39 76.9
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 5.5e-12 74.3 39 79.5
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 7.2e-12 73.9 39 76.9
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 9.4e-12 73.6 39 76.9
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 9.4e-12 73.6 38 78.9
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 1.2e-11 73.2 39 74.4
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 1.2e-11 73.2 39 74.4
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 1.2e-11 73.2 39 74.4
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 1.6e-11 72.8 39 76.9
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 1.6e-11 72.8 45 73.3
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 1.6e-11 72.8 37 81.1
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 1.6e-11 72.8 44 75.0
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 2.7e-11 72.0 39 76.9
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 2.7e-11 72.0 38 81.6
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 2.7e-11 72.0 39 74.4
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 6.1e-11 70.9 38 76.3
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 1.0e-10 70.1 39 71.8
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 1.0e-10 70.1 39 71.8
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 1.0e-10 70.1 38 76.3
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 1.0e-10 70.1 38 76.3
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 1.0e-10 70.1 44 72.7
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 2.3e-10 68.9 39 74.4
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 3.0e-10 68.6 39 69.2
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 3.9e-10 68.2 38 73.7
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 5.1e-10 67.8 39 71.8
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 5.1e-10 67.8 39 71.8
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 6.7e-10 67.4 39 69.2
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 8.8e-10 67.0 39 66.7
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 1.1e-09 66.6 44 70.5
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 9.7e-09 63.5 39 71.8
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 9.7e-09 63.5 44 65.9
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 1.3e-08 63.2 39 64.1
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 1.3e-08 63.2 38 71.1
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 1.3e-08 63.2 39 69.2


User provided reference genes

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