Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0116331 Helianthus annuus HOM05D000123 ORTHO05D000064 2.6e-118 428.7 217 100.0
HanXRQChr04g0116311 Helianthus annuus HOM05D000123 ORTHO05D000064 3.5e-110 401.7 215 95.8
HanXRQChr11g0324601 Helianthus annuus HOM05D000123 ORTHO05D000064 1.9e-60 236.5 237 54.9
Lsat_1_v5_gn_7_25320 Lactuca sativa HOM05D000123 ORTHO05D000064 4.3e-52 208.8 234 53.8
ECA236G3623 Erigeron canadensis HOM05D000123 ORTHO05D006238 1.0e-45 187.6 230 50.9
Lsat_1_v5_gn_4_48361 Lactuca sativa HOM05D000123 ORTHO05D000064 4.8e-43 178.7 212 50.5
HanXRQChr16g0519411 Helianthus annuus HOM05D000123 ORTHO05D000064 9.3e-39 164.5 242 45.9
ECA234G0567 Erigeron canadensis HOM05D000123 ORTHO05D000064 3.6e-22 109.4 237 38.0
Nitab4.5_0002458g0040 Nicotiana tabacum HOM05D000123 ORTHO05D000064 2.5e-20 103.2 276 31.5
DCAR_007927 Daucus carota HOM05D000123 ORTHO05D000064 1.3e-19 100.9 272 33.1
Nitab4.5_0005428g0010 Nicotiana tabacum HOM05D000123 ORTHO05D000064 1.6e-19 100.5 277 32.5
CSS0040228 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 2.8e-19 99.8 268 32.5
Dinv12740 Davidia involucrata HOM05D000123 ORTHO05D000064 6.3e-19 98.6 257 33.1
Solyc02g072000.3 Solanum lycopersicum HOM05D000123 ORTHO05D000064 1.4e-18 97.4 277 31.0
Solyc03g006000.3 Solanum lycopersicum HOM05D000123 ORTHO05D000064 1.8e-18 97.1 277 31.4
Sopen02g020980 Solanum pennellii HOM05D000123 ORTHO05D000064 2.4e-18 96.7 277 30.7
Sopen03g002000 Solanum pennellii HOM05D000123 ORTHO05D000064 2.4e-18 96.7 277 30.7
PGSC0003DMG401027812 Solanum tuberosum HOM05D000123 ORTHO05D000064 2.4e-18 96.7 281 30.2
TWI73G0371 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 2.4e-18 96.7 277 30.3
Dinv32326 Davidia involucrata HOM05D000123 ORTHO05D000064 2.6e-17 93.2 240 32.1
Nitab4.5_0012199g0010 Nicotiana tabacum HOM05D000123 ORTHO05D000064 3.4e-17 92.8 281 31.0
Peaxi162Scf01009g00222 Petunia axillaris HOM05D000123 ORTHO05D000064 3.4e-17 92.8 277 31.4
TWI53G0485 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 4.5e-17 92.4 276 31.2
EL10Ac8g19881 Beta vulgaris HOM05D000123 ORTHO05D000064 1.7e-16 90.5 275 30.2
Gorai.011G036400 Gossypium raimondii HOM05D000123 ORTHO05D000064 2.2e-16 90.1 271 29.5
Oeu001069.1 Olea europaea HOM05D000001 ORTHO05D006238 6.5e-16 88.6 226 31.9
Gohir.A10G033900 Gossypium hirsutum HOM05D000123 ORTHO05D000064 8.5e-16 88.2 271 28.8
AUR62039492 Chenopodium quinoa HOM05D000123 ORTHO05D000064 2.5e-15 86.7 277 30.3
AUR62041808 Chenopodium quinoa HOM05D000123 ORTHO05D000064 3.2e-15 86.3 277 29.6
Gohir.D10G034600 Gossypium hirsutum HOM05D000123 ORTHO05D000064 4.2e-15 85.9 271 28.4
SGA_v2.0_scaffold1G00097 Striga asiatica HOM05D000123 ORTHO05D000064 5.5e-15 85.5 246 30.5
Carub.0008s0228 Capsella rubella HOM05D000123 ORTHO05D000064 7.2e-15 85.1 242 29.8
Migut.M00999 Erythranthe guttata HOM05D000123 ORTHO05D000064 7.2e-15 85.1 286 29.4
Ah.14g086930 Amaranthus hybridus HOM05D000123 ORTHO05D000064 1.2e-14 84.3 276 29.0
TWI09G0153 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 1.6e-14 84.0 277 28.9
Gohir.A06G199100 Gossypium hirsutum HOM05D000123 ORTHO05D000064 3.6e-14 82.8 248 28.6
Hund21451 Selenicereus undatus HOM05D000123 ORTHO05D000064 4.6e-14 82.4 279 27.6
CARHR176260 Cardamine hirsuta HOM05D000123 ORTHO05D000064 6.1e-14 82.0 242 28.9
AL8G12940 Arabidopsis lyrata HOM05D000123 ORTHO05D000064 7.9e-14 81.6 239 28.9
Oeu039870.1 Olea europaea HOM05D000123 ORTHO05D000064 7.9e-14 81.6 241 32.0
CAN.G411.34 Capsicum annuum HOM05D000123 ORTHO05D000064 1.4e-13 80.9 272 27.9
Nitab4.5_0001778g0090 Nicotiana tabacum HOM05D000123 ORTHO05D000064 1.4e-13 80.9 281 29.9
MSTRG.16174 Avicennia marina HOM05D000123 ORTHO05D000064 1.8e-13 80.5 234 29.5
Lj1P1176T57 Lonicera japonica HOM05D000123 ORTHO05D000064 1.8e-13 80.5 239 29.7
AT5G45710 Arabidopsis thaliana HOM05D000123 ORTHO05D000064 2.3e-13 80.1 234 28.2
Thhalv10000950m.g Eutrema salsugineum HOM05D000123 ORTHO05D000064 2.3e-13 80.1 235 31.1
Gohir.D06G206400 Gossypium hirsutum HOM05D000123 ORTHO05D000064 2.3e-13 80.1 248 27.8
Sabra04G0041300 Salix brachista HOM05D000123 ORTHO05D000064 2.3e-13 80.1 272 29.4
Peaxi162Scf00112g00104 Petunia axillaris HOM05D000123 ORTHO05D000064 6.7e-13 78.6 277 29.6
Cpa.g.sc124.4 Carica papaya HOM05D000123 ORTHO05D000064 1.1e-12 77.8 286 28.3
Ah.09g233200 Amaranthus hybridus HOM05D000123 ORTHO05D000064 1.5e-12 77.4 276 29.7
Aa31LG6G1560 Aethionema arabicum HOM05D000001 ORTHO05D006238 2.0e-12 77.0 257 30.7
Cc02_g15780 Coffea canephora HOM05D000123 ORTHO05D000064 2.0e-12 77.0 243 28.4
Potri.004G062300 Populus trichocarpa HOM05D000123 ORTHO05D000064 5.7e-12 75.5 274 28.8
Duzib160G0076 Durio zibethinus HOM05D000123 ORTHO05D000064 7.4e-12 75.1 264 28.0
Gorai.010G240800 Gossypium raimondii HOM05D000123 ORTHO05D000064 7.4e-12 75.1 248 26.6
Potri.011G071700 Populus trichocarpa HOM05D000123 ORTHO05D000064 7.4e-12 75.1 278 28.4
Ca_27593_v3 Cicer arietinum L. HOM05D000123 ORTHO05D000064 9.7e-12 74.7 263 28.5
ClCG01G023980 Citrullus lanatus HOM05D000123 ORTHO05D000064 1.3e-11 74.3 278 25.2
MELO3C007192.2 Cucumis melo HOM05D000123 ORTHO05D000064 1.3e-11 74.3 281 26.7
DCAR_027970 Daucus carota HOM05D000123 ORTHO05D000064 2.2e-11 73.6 226 31.4
Cfa001112 Carpinus fangiana HOM05D000123 ORTHO05D000064 2.8e-11 73.2 247 29.6
Duzib235G1095 Durio zibethinus HOM05D000123 ORTHO05D000064 2.8e-11 73.2 266 28.9
BcaC04g21748 Brassica carinata HOM05D000123 ORTHO05D000064 4.8e-11 72.4 234 29.5
BolC9t55672H Brassica oleracea HOM05D000123 ORTHO05D000064 4.8e-11 72.4 234 29.5
CAN.G1569.3 Capsicum annuum HOM05D000123 ORTHO05D000064 6.3e-11 72.0 267 29.2
VMungo0540G0100 Vigna mungo HOM05D000123 ORTHO05D000064 6.3e-11 72.0 264 29.9
HanXRQChr01g0028651 Helianthus annuus HOM05D000123 ORTHO05D000064 8.2e-11 71.6 228 28.1
HanXRQChr17g0565381 Helianthus annuus HOM05D000123 ORTHO05D000064 8.2e-11 71.6 255 27.8
A09p21880 Brassica napus HOM05D000123 ORTHO05D000064 1.1e-10 71.2 233 29.2
BraA09t37791Z Brassica rapa HOM05D000123 ORTHO05D000064 1.1e-10 71.2 233 29.2
Haze_05369 Corylus avellana HOM05D000123 ORTHO05D000064 1.4e-10 70.9 247 29.1
Sabra11G0056100 Salix brachista HOM05D000123 ORTHO05D000064 1.4e-10 70.9 264 28.0
Sabra11G0059300 Salix brachista HOM05D000123 ORTHO05D000064 1.4e-10 70.9 264 28.0
Phvul.006G171700 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 1.8e-10 70.5 263 29.7
BcaB07g30872 Brassica carinata HOM05D000123 ORTHO05D000064 2.4e-10 70.1 233 29.6
C09p28050 Brassica napus HOM05D000123 ORTHO05D000064 2.4e-10 70.1 234 29.1
Sp2g10600 Schrenkiella parvula HOM05D000123 ORTHO05D000064 2.4e-10 70.1 246 29.3
CsaV3_6G051120 Cucumis sativus L. HOM05D000123 ORTHO05D000064 4.1e-10 69.3 282 26.2
Sed0026078 Sechium edule HOM05D000123 ORTHO05D000064 5.3e-10 68.9 273 25.6
Ciclev10015472m.g Citrus clementina HOM05D000123 ORTHO05D000064 9.1e-10 68.2 275 28.0
arahy.Tifrunner.gnm1.ann1.PW78BB Arachis hypogaea HOM05D000123 ORTHO05D000064 2.0e-09 67.0 263 26.2
arahy.Tifrunner.gnm1.ann1.G2HH9X Arachis hypogaea HOM05D000123 ORTHO05D000064 2.6e-09 66.6 261 27.2
Eucgr.E02813 Eucalyptus grandis HOM05D000123 ORTHO05D000064 2.6e-09 66.6 289 26.3
Ca_17887_v3 Cicer arietinum L. HOM05D000123 ORTHO05D000064 3.4e-09 66.2 271 26.6
Sopen07g029070 Solanum pennellii HOM05D000123 ORTHO05D000064 3.4e-09 66.2 231 29.9
Lsat_1_v5_gn_4_26761 Lactuca sativa HOM05D000123 ORTHO05D000064 1.0e-08 64.7 220 29.5
PGR031G1879 Punica granatum HOM05D000123 ORTHO05D000064 1.0e-08 64.7 250 28.8
CANSAT35G0269 Cannabis sativa HOM05D000123 ORTHO05D000064 1.3e-08 64.3 270 26.7
Hma1.2p1_0178F.1_g078350 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 1.7e-08 63.9 282 25.9
Solyc07g055710.3 Solanum lycopersicum HOM05D000123 ORTHO05D000064 2.9e-08 63.2 230 30.0
VMungo0251G2077 Vigna mungo HOM05D000123 ORTHO05D000064 2.9e-08 63.2 262 27.1
CARHR225760 Cardamine hirsuta HOM05D000123 ORTHO05D000064 3.8e-08 62.8 267 27.7
GSVIVG01021269001 Vitis vinifera HOM05D000123 ORTHO05D000064 3.8e-08 62.8 142 35.2
AL7G35300 Arabidopsis lyrata HOM05D000123 ORTHO05D000064 5.0e-08 62.4 237 27.4
Lj6g0022642 Lotus japonicus HOM05D000123 ORTHO05D000064 6.5e-08 62.0 274 25.5
Medtr8g087540 Medicago truncatula HOM05D000123 ORTHO05D000064 8.5e-08 61.6 272 25.7
CANSAT64G1395 Cannabis sativa HOM05D000123 ORTHO05D000064 1.1e-07 61.2 144 30.6
Lj4g0010286 Lotus japonicus HOM05D000123 ORTHO05D000064 1.1e-07 61.2 275 26.2
CsaV3_1G033050 Cucumis sativus L. HOM05D000123 ORTHO05D000064 1.4e-07 60.8 277 25.6
Glyma.05G162300 Glycine max HOM05D000123 ORTHO05D000064 1.4e-07 60.8 272 24.3
Phvul.002G242000 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 1.4e-07 60.8 272 26.1
THA.LOC104798435 Tarenaya hassleriana HOM05D000123 ORTHO05D000064 3.2e-07 59.7 215 28.4
Thhalv10025409m.g Eutrema salsugineum HOM05D000123 ORTHO05D000064 4.2e-07 59.3 264 26.1
Aa31LG9G7350 Aethionema arabicum HOM05D000123 ORTHO05D000064 5.5e-07 58.9 145 31.0
Dinv11425 Davidia involucrata HOM05D000123 ORTHO05D000064 5.5e-07 58.9 173 30.1
Glyma.08G119900 Glycine max HOM05D000123 ORTHO05D000064 5.5e-07 58.9 273 23.8
CAN.G803.13 Capsicum annuum HOM05D000123 ORTHO05D000064 7.2e-07 58.5 149 32.9
AT4G18880 Arabidopsis thaliana HOM05D000123 ORTHO05D000064 9.4e-07 58.2 235 28.1
BcaC01g00576 Brassica carinata HOM05D000123 ORTHO05D000064 9.4e-07 58.2 262 27.5
BcaC06g30599 Brassica carinata HOM05D000123 ORTHO05D000064 9.4e-07 58.2 260 26.5
C03p81530 Brassica napus HOM05D000123 ORTHO05D000064 9.4e-07 58.2 262 27.5
BolC3t20424H Brassica oleracea HOM05D000123 ORTHO05D000064 9.4e-07 58.2 262 27.5
CiPaw.09G136500 Carya illinoinensis HOM05D000123 ORTHO05D000064 9.4e-07 58.2 252 24.6
Duzib192G0056 Durio zibethinus HOM05D000123 ORTHO05D000064 9.4e-07 58.2 265 26.8
GSVIVG01020781001 Vitis vinifera HOM05D000123 ORTHO05D000064 9.4e-07 58.2 247 25.5
Atru.chr10.1528 Acer truncatum HOM05D000123 ORTHO05D000064 1.2e-06 57.8 266 27.4
ECA234G1228 Erigeron canadensis HOM05D000123 ORTHO05D000064 1.2e-06 57.8 224 27.2
Glyma.15G086400 Glycine max HOM05D000123 ORTHO05D000064 1.2e-06 57.8 269 27.9
ClCG03G007410 Citrullus lanatus HOM05D000123 ORTHO05D000064 1.6e-06 57.4 280 26.8
Psat7g067800 Pisum sativum HOM05D000123 ORTHO05D000064 1.6e-06 57.4 230 28.7
Sed0011231 Sechium edule HOM05D000123 ORTHO05D000064 2.1e-06 57.0 280 25.4
Carub.0007s2232 Capsella rubella HOM05D000123 ORTHO05D000064 2.7e-06 56.6 272 26.1
Lalb_Chr07g0186211 Lupinus albus HOM05D000123 ORTHO05D000064 2.7e-06 56.6 230 26.5
Sp7g17590 Schrenkiella parvula HOM05D000123 ORTHO05D000064 2.7e-06 56.6 263 26.6
Nn3g21070 Nelumbo nucifera HOM05D000123 ORTHO05D000064 3.6e-06 56.2 174 28.7
THA.LOC104806169 Tarenaya hassleriana HOM05D000123 ORTHO05D000064 3.6e-06 56.2 276 25.7
MD00G1007800 Malus domestica HOM05D000123 ORTHO05D000064 4.7e-06 55.8 289 24.6
TPR.G6752 Trifolium pratense HOM05D000123 ORTHO05D000064 4.7e-06 55.8 197 28.9
BcaNung02681 Brassica carinata HOM05D000123 ORTHO05D000064 6.1e-06 55.5 260 25.8
C07p50040 Brassica napus HOM05D000123 ORTHO05D000064 6.1e-06 55.5 260 25.8
Nitab4.5_0003133g0040 Nicotiana tabacum HOM05D000123 ORTHO05D000064 7.9e-06 55.1 150 28.7


User provided reference genes

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