Gene: AT4G18880
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G18880
- Transcript Identifier AT4G18880.1
- Gene Type Coding gene
- Location Chr4 : 10347769-10349051 : negative
Gene Family Information
- ID HOM05D000123
- #Genes/#Species 2785/100
- Phylogenetic origin
- ID ORTHO05D000064
- #Genes/#Species 2617/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G18880.1
- symbol HSF A4A
- Alias AT-HSFA4A,ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A
- full_name heat shock transcription factor A4A
- uniprot O49403
Descriptions
- Description heat shock transcription factor A4A
- Computational description heat shock transcription factor A4A (HSF A4A); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT5G45710.1); Has 2263 Blast hits to 2244 proteins in 239 species: Archae - 2; Bacteria - 4; Metazoa - 360; Fungi - 491; Plants - 856; Viruses - 0; Other Eukaryotes - 550 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEP | Gene Ontology | regulation of transcription, DNA-templated | 1 |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0010200 | IEP | GOA Database | response to chitin | |
| GO:0034605 | IBA | Gene Ontology | cellular response to heat | 2 |
| GO:0006357 | IBA | Gene Ontology | regulation of transcription by RNA polymerase II | 2 |
| GO:0045893 | IDA | Gene Ontology | positive regulation of transcription, DNA-templated | 1 |
| GO:0000302 | IMP | Gene Ontology | response to reactive oxygen species | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | IEA | GOA Database | DNA-binding transcription factor activity | |
| GO:0003700 | ISS, IBA | Gene Ontology | DNA-binding transcription factor activity | 2 3 |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0043565 | IEA | GOA Database | sequence-specific DNA binding | |
| GO:0043565 | IEA | InterPro | sequence-specific DNA binding | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0000978 | IBA | Gene Ontology | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 2 |
| GO:0000976 | IPI | Gene Ontology | transcription cis-regulatory region binding | 4 |
| GO:0042803 | IPI | Gene Ontology | protein homodimerization activity | 1 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM, IBA | Gene Ontology | nucleus | 1 2 |
| GO:0005737 | IEA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.13 | RNA biosynthesis.transcriptional regulation.transcription factor (HSF) |