Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 1.7e-88 329.3 164 100.0
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 4.5e-86 321.2 163 97.5
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 4.2e-84 314.7 164 95.1
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 2.9e-77 292.0 146 97.9
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 3.8e-69 265.0 143 91.6
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 2.5e-68 262.3 143 90.2
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 2.5e-68 262.3 143 90.2
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 5.5e-68 261.2 143 90.2
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-65 253.4 135 91.1
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.0e-65 252.7 135 91.1
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.0e-65 252.7 135 91.1
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.0e-65 252.7 135 91.1
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.0e-65 252.7 135 91.1
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.0e-65 252.7 135 91.1
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 2.0e-65 252.7 163 80.4
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 2.7e-62 242.3 128 93.0
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 2.9e-61 238.8 128 92.2
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 2.9e-61 238.8 125 92.8
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 2.9e-61 238.8 125 92.8
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 2.9e-61 238.8 126 92.1
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 3.8e-61 238.4 125 92.8
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 3.8e-61 238.4 125 92.8
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 5.0e-61 238.0 125 92.0
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 5.0e-61 238.0 125 92.8
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 1.5e-60 236.5 124 92.7
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 1.5e-60 236.5 124 92.7
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.5e-60 236.5 126 92.1
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 2.5e-60 235.7 126 91.3
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 9.4e-60 233.8 126 92.1
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 9.4e-60 233.8 128 89.8
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.0e-58 230.3 128 89.1
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 1.4e-58 229.9 128 88.3
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.8e-58 229.6 125 91.2
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 3.0e-58 228.8 128 88.3
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 6.8e-58 227.6 121 91.7
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 1.2e-57 226.9 127 89.8
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 1.2e-57 226.9 128 86.7
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 2.6e-57 225.7 126 88.1
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 2.6e-57 225.7 126 88.1
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 2.6e-57 225.7 126 88.1
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 2.6e-57 225.7 126 88.1
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 2.6e-57 225.7 126 88.1
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 2.6e-57 225.7 126 88.1
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 2.6e-57 225.7 126 88.1
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 2.6e-57 225.7 126 88.1
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 1.1e-55 220.3 117 90.6
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 5.4e-55 218.0 117 91.5
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 5.4e-55 218.0 117 91.5
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 5.4e-55 218.0 117 91.5
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 5.4e-55 218.0 117 91.5
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 5.4e-55 218.0 117 91.5
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 5.4e-55 218.0 117 91.5
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 5.4e-55 218.0 117 91.5
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 5.4e-55 218.0 117 91.5
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 5.4e-55 218.0 117 91.5
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 5.4e-55 218.0 117 91.5
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 1.2e-54 216.9 122 87.7
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 2.7e-54 215.7 115 91.3
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 2.8e-51 205.7 123 83.7
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 6.8e-50 201.1 117 82.9
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 3.5e-46 188.7 110 85.5
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 8.6e-45 184.1 128 73.4
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 1.9e-44 183.0 118 76.3
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 2.5e-44 182.6 115 78.3
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 3.3e-44 182.2 97 93.8
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 7.3e-44 181.0 96 93.8
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 7.3e-44 181.0 128 74.2
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 1.6e-43 179.9 120 80.0
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 2.0e-41 172.9 103 83.5
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 2.0e-41 172.9 103 83.5
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 2.0e-41 172.9 103 83.5
Nn1g09996 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.3e-40 170.2 91 90.1
Nn1g10097 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.3e-40 170.2 91 90.1
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.7e-40 168.7 126 70.6
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 3.7e-40 168.7 126 70.6
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 6.4e-40 167.9 98 86.7
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 1.1e-39 167.2 102 83.3
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 1.4e-39 166.8 96 87.5
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 1.4e-39 166.8 96 87.5
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 2.7e-38 162.5 141 61.7
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 4.6e-38 161.8 96 85.4
Hma1.2p1_0716F.1_g208040 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 4.6e-30 135.2 72 91.7
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 3.9e-29 132.1 67 95.5
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 1.5e-28 130.2 75 86.7
BraSC77t46631Z Brassica rapa HOM05D004291 ORTHO05D005620 1.4e-26 123.6 74 79.7
BraSC177t45746Z Brassica rapa HOM05D004291 ORTHO05D005620 3.1e-26 122.5 106 65.1
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-25 120.6 72 83.3
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 9.9e-25 117.5 127 44.9
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 8.3e-24 114.4 73 80.8
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.1e-23 111.3 60 86.7
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.1e-22 109.8 131 50.4
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 2.5e-20 102.8 50 98.0
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 7.3e-20 101.3 69 76.8
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 3.6e-19 99.0 58 86.2
BraSC48t46285Z Brassica rapa HOM05D004291 ORTHO05D005620 5.2e-18 95.1 46 91.3
ATR0461G002 Amborella trichopoda HOM05D004291 ORTHO05D005620 1.2e-17 94.0 54 83.3
BolSC28t60389H Brassica oleracea HOM05D004291 ORTHO05D005620 5.8e-17 91.7 44 90.9
BolSC28t60408H Brassica oleracea HOM05D004291 ORTHO05D005620 5.8e-17 91.7 44 90.9
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 9.9e-17 90.9 78 64.1
ClCG06G009310 Citrullus lanatus HOM05D004291 ORTHO05D005620 4.9e-16 88.6 46 89.1
Solyc02g021365.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.7e-13 80.1 66 65.2
Peaxi162Scf00187g00115 Petunia axillaris HOM05D004291 ORTHO05D005620 1.5e-12 77.0 44 81.8
SHI06816 Sapria himalayana HOM05D004291 ORTHO05D005620 1.5e-12 77.0 76 57.9
SHI33022 Sapria himalayana HOM05D004291 ORTHO05D005620 3.3e-12 75.9 54 75.9
SMO053G0010 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 4.3e-12 75.5 110 44.5
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 7.3e-12 74.7 48 83.3
Sabra01G0004500 Salix brachista HOM05D000521 ORTHO05D006286 7.3e-12 74.7 74 59.5
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 1.6e-11 73.6 38 92.1
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 3.6e-11 72.4 85 49.4
Haze_27535 Corylus avellana HOM05D004291 ORTHO05D005620 8.1e-11 71.2 111 37.8
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 1.9e-07 60.1 54 59.3


User provided reference genes

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