Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0107891 Helianthus annuus HOM05D003126 ORTHO05D005034 3.8e-24 114.0 57 100.0
HanXRQChr01g0016081 Helianthus annuus HOM05D003126 ORTHO05D005034 2.7e-14 81.3 57 75.4
Lsat_1_v5_gn_1_108381 Lactuca sativa HOM05D003126 ORTHO05D005034 1.1e-10 69.3 57 64.9
Lj7A569T65 Lonicera japonica HOM05D003126 ORTHO05D005034 1.8e-10 68.6 53 66.0
Actinidia20677 Actinidia chinensis HOM05D003126 ORTHO05D005034 4.1e-10 67.4 53 64.2
Actinidia21560 Actinidia chinensis HOM05D003126 ORTHO05D005034 4.1e-10 67.4 53 64.2
Cpa.g.sc245.7 Carica papaya HOM05D003126 ORTHO05D005034 6.9e-10 66.6 57 59.6
Medtr3g028140 Medicago truncatula HOM05D003126 ORTHO05D005034 6.9e-10 66.6 53 62.3
Rhsim01G0130500 Rhododendron simsii HOM05D003126 ORTHO05D005034 6.9e-10 66.6 53 64.2
vmacro21181 Vaccinium macrocarpon HOM05D003126 ORTHO05D005034 6.9e-10 66.6 53 64.2
Glyma.15G272900 Glycine max HOM05D003126 ORTHO05D005034 9.1e-10 66.2 53 62.3
Lj9C630G6 Lonicera japonica HOM05D003126 ORTHO05D005034 9.1e-10 66.2 53 64.2
Glyma.03G109800 Glycine max HOM05D003126 ORTHO05D005034 1.2e-09 65.9 53 60.4
HanXRQChr06g0185401 Helianthus annuus HOM05D003126 ORTHO05D005034 1.2e-09 65.9 57 57.9
Nitab4.5_0003361g0050 Nicotiana tabacum HOM05D003126 ORTHO05D005034 1.2e-09 65.9 53 64.2
arahy.Tifrunner.gnm1.ann1.4P5PRD Arachis hypogaea HOM05D003126 ORTHO05D005034 1.5e-09 65.5 55 58.2
arahy.Tifrunner.gnm1.ann1.6ZH3JQ Arachis hypogaea HOM05D003126 ORTHO05D005034 1.5e-09 65.5 55 58.2
ECA248G0857 Erigeron canadensis HOM05D003126 ORTHO05D005034 1.5e-09 65.5 53 64.2
Dinv09366 Davidia involucrata HOM05D003126 ORTHO05D005034 2.0e-09 65.1 49 65.3
Hma1.2p1_0312F.1_g121420 Hydrangea macrophylla HOM05D003126 ORTHO05D005034 2.0e-09 65.1 49 65.3
Peaxi162Scf00428g00715 Petunia axillaris HOM05D003126 ORTHO05D005034 2.0e-09 65.1 53 64.2
Ca_14367_v3 Cicer arietinum L. HOM05D003126 ORTHO05D005034 2.6e-09 64.7 52 63.5
Haze_03230 Corylus avellana HOM05D003126 ORTHO05D005034 2.6e-09 64.7 53 62.3
Glyma.08G153100 Glycine max HOM05D003126 ORTHO05D005034 2.6e-09 64.7 53 60.4
Psat5g204360 Pisum sativum HOM05D003126 ORTHO05D005034 2.6e-09 64.7 53 60.4
VMungo1080G1220 Vigna mungo HOM05D003126 ORTHO05D005034 2.6e-09 64.7 53 60.4
Ciclev10033914m.g Citrus clementina HOM05D003126 ORTHO05D005034 3.4e-09 64.3 58 56.9
Cc02_g27720 Coffea canephora HOM05D003126 ORTHO05D005034 3.4e-09 64.3 55 60.0
RcHm_v2.0_Chr1g0314991 Rosa chinensis HOM05D003126 ORTHO05D005034 3.4e-09 64.3 53 62.3
Solyc01g086980.4 Solanum lycopersicum HOM05D003126 ORTHO05D005034 3.4e-09 64.3 53 62.3
TWI09G0721 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 3.4e-09 64.3 53 60.4
CiPaw.13G003500 Carya illinoinensis HOM05D003126 ORTHO05D005034 4.5e-09 63.9 53 60.4
Migut.N01475 Erythranthe guttata HOM05D003126 ORTHO05D005034 4.5e-09 63.9 49 67.3
Prupe.2G010500 Prunus persica HOM05D003126 ORTHO05D005034 4.5e-09 63.9 55 60.0
Sopen01g033970 Solanum pennellii HOM05D003126 ORTHO05D005034 4.5e-09 63.9 55 58.2
CAN.G170.119 Capsicum annuum HOM05D003126 ORTHO05D005034 5.9e-09 63.5 53 62.3
Dinv43458 Davidia involucrata HOM05D003126 ORTHO05D005034 5.9e-09 63.5 49 65.3
Lj3g0014064 Lotus japonicus HOM05D003126 ORTHO05D005034 5.9e-09 63.5 53 60.4
Nitab4.5_0000634g0050 Nicotiana tabacum HOM05D003126 ORTHO05D005034 5.9e-09 63.5 53 62.3
Cfa010743 Carpinus fangiana HOM05D003126 ORTHO05D005034 7.7e-09 63.2 53 60.4
MD07G1007800 Malus domestica HOM05D003126 ORTHO05D005034 7.7e-09 63.2 55 56.4
Sabra16G0164800 Salix brachista HOM05D003126 ORTHO05D005034 7.7e-09 63.2 55 60.0
COL.COLO4_23919 Corchorus olitorius HOM05D003126 ORTHO05D005034 1.0e-08 62.8 49 63.3
FAN01G1724 Fragaria x ananassa HOM05D003126 ORTHO05D005034 1.0e-08 62.8 53 60.4
TPR.G12288 Trifolium pratense HOM05D003126 ORTHO05D005034 1.0e-08 62.8 56 57.1
Atru.chr11.2643 Acer truncatum HOM05D003126 ORTHO05D005034 1.3e-08 62.4 53 58.5
Aqoxy1G00215 Aquilegia oxysepala HOM05D003126 ORTHO05D005034 1.3e-08 62.4 49 63.3
EL10Ac2g04311 Beta vulgaris HOM05D003126 ORTHO05D005034 1.3e-08 62.4 53 58.5
CSS0008425 Camellia sinensis var. sinensis HOM05D003126 ORTHO05D005034 1.3e-08 62.4 53 60.4
Gohir.A08G027600 Gossypium hirsutum HOM05D003126 ORTHO05D005034 1.3e-08 62.4 56 58.9
Gohir.D08G038300 Gossypium hirsutum HOM05D003126 ORTHO05D005034 1.3e-08 62.4 56 58.9
Manes.10G145600 Manihot esculenta HOM05D003126 ORTHO05D005034 1.3e-08 62.4 53 60.4
GSVIVG01032066001 Vitis vinifera HOM05D003126 ORTHO05D005034 1.3e-08 62.4 49 63.3
Lalb_Chr25g0283141 Lupinus albus HOM05D003126 ORTHO05D005034 1.7e-08 62.0 53 60.4
MBI01_g27625_MAGBIO Magnolia biondii HOM05D003126 ORTHO05D005034 1.7e-08 62.0 49 63.3
Oeu010350.1 Olea europaea HOM05D003126 ORTHO05D005034 1.7e-08 62.0 53 60.4
TWI73G1191 Tripterygium wilfordii HOM05D003126 ORTHO05D005034 1.7e-08 62.0 53 60.4
CANSAT80G2854 Cannabis sativa HOM05D003126 ORTHO05D005034 2.2e-08 61.6 57 56.1
MD02G1314400 Malus domestica HOM05D003126 ORTHO05D005034 2.2e-08 61.6 55 56.4
Eucgr.J01261 Eucalyptus grandis HOM05D003126 ORTHO05D005034 2.9e-08 61.2 53 60.4
FvH4_7g00830 Fragaria vesca HOM05D003126 ORTHO05D005034 2.9e-08 61.2 53 60.4
FAN06G0385 Fragaria x ananassa HOM05D003126 ORTHO05D005034 2.9e-08 61.2 53 60.4
FAN10G2088 Fragaria x ananassa HOM05D003126 ORTHO05D005034 2.9e-08 61.2 53 60.4
Phvul.005G036300 Phaseolus vulgaris HOM05D003126 ORTHO05D005034 2.9e-08 61.2 53 56.6
Potri.001G269200 Populus trichocarpa HOM05D003126 ORTHO05D005034 2.9e-08 61.2 53 58.5
QL04p005483 Quercus lobata HOM05D003126 ORTHO05D005034 2.9e-08 61.2 53 58.5
FAN03G0993 Fragaria x ananassa HOM05D003126 ORTHO05D005034 3.8e-08 60.8 53 58.5
Gorai.004G036800 Gossypium raimondii HOM05D003126 ORTHO05D005034 3.8e-08 60.8 44 70.5
Sabra09G0047100 Salix brachista HOM05D003126 ORTHO05D005034 3.8e-08 60.8 53 60.4
Hund03667 Selenicereus undatus HOM05D003126 ORTHO05D005034 3.8e-08 60.8 49 61.2
TAR636G3316 Trochodendron aralioides HOM05D003126 ORTHO05D005034 3.8e-08 60.8 49 61.2
DCAR_006297 Daucus carota HOM05D003126 ORTHO05D005034 5.0e-08 60.5 45 60.0
SGA_v2.0_scaffold4G02256 Striga asiatica HOM05D003126 ORTHO05D005034 5.0e-08 60.5 53 60.4
SGA_v2.0_scaffold95G28793 Striga asiatica HOM05D003126 ORTHO05D005034 5.0e-08 60.5 49 65.3
TAR633G1448 Trochodendron aralioides HOM05D003126 ORTHO05D005034 5.0e-08 60.5 49 61.2
Potri.009G063800 Populus trichocarpa HOM05D003126 ORTHO05D005034 6.5e-08 60.1 53 60.4
AUR62009373 Chenopodium quinoa HOM05D003126 ORTHO05D005034 8.5e-08 59.7 49 61.2
AUR62023054 Chenopodium quinoa HOM05D003126 ORTHO05D005034 8.5e-08 59.7 49 61.2
Zm00001eb034750 Zea mays HOM05D003126 ORTHO05D005034 8.5e-08 59.7 57 57.9
Oeu047556.1 Olea europaea HOM05D003126 ORTHO05D005034 1.1e-07 59.3 53 60.4
Thecc.01G412800 Theobroma cacao HOM05D003126 ORTHO05D005034 1.1e-07 59.3 44 68.2
Duzib268G0285 Durio zibethinus HOM05D003126 ORTHO05D005034 1.4e-07 58.9 36 75.0
MSTRG.20596 Avicennia marina HOM05D003126 ORTHO05D005034 1.9e-07 58.5 53 58.5
GSVIVG01026192001 Vitis vinifera HOM05D003126 ORTHO05D005034 1.9e-07 58.5 48 60.4
Sed0002072 Sechium edule HOM05D003126 ORTHO05D005034 2.5e-07 58.2 58 56.9
Lalb_Chr03g0033961 Lupinus albus HOM05D003126 ORTHO05D005034 3.2e-07 57.8 51 56.9
Nn1g00625 Nelumbo nucifera HOM05D003126 ORTHO05D005034 3.2e-07 57.8 49 59.2
SEGI_32234 Sequoiadendron giganteum HOM05D003126 ORTHO05D005034 3.2e-07 57.8 43 55.8
CDE04G0460 Ceratophyllum demersum HOM05D003126 ORTHO05D005034 4.2e-07 57.4 47 59.6
Duzib138G0006 Durio zibethinus HOM05D003126 ORTHO05D005034 4.2e-07 57.4 44 65.9
Zm00001eb199820 Zea mays HOM05D003126 ORTHO05D005034 4.2e-07 57.4 57 54.4
Migut.B01323 Erythranthe guttata HOM05D003126 ORTHO05D005034 5.5e-07 57.0 41 63.4
Nn7g36179 Nelumbo nucifera HOM05D003126 ORTHO05D005034 5.5e-07 57.0 56 53.6
Os08g0504600 Oryza sativa ssp. japonica HOM05D003126 ORTHO05D005034 5.5e-07 57.0 49 59.2
Sc11g0009280 Simmondsia chinensis HOM05D003126 ORTHO05D005034 5.5e-07 57.0 53 54.7
AT3G12640 Arabidopsis thaliana HOM05D003126 ORTHO05D005034 7.2e-07 56.6 53 56.6
Lj3g0024945 Lotus japonicus HOM05D003126 ORTHO05D005034 7.2e-07 56.6 53 54.7
Nn1g00624 Nelumbo nucifera HOM05D003126 ORTHO05D005034 7.2e-07 56.6 49 59.2
HPP92_015771 Vanilla planifolia HOM05D003126 ORTHO05D005034 7.2e-07 56.6 59 54.2
BNapus_Darmor_BZH_scaffold_149p00170 Brassica napus HOM05D003126 ORTHO05D005034 9.4e-07 56.2 56 53.6
BraA01t04119Z Brassica rapa HOM05D003126 ORTHO05D005034 9.4e-07 56.2 56 53.6
Thhalv10020251m.g Eutrema salsugineum HOM05D003126 ORTHO05D005034 9.4e-07 56.2 53 54.7
CDE07G1013 Ceratophyllum demersum HOM05D003126 ORTHO05D005034 1.2e-06 55.8 55 49.1
PSO339G3182 Papaver somniferum HOM05D003126 ORTHO05D005034 1.2e-06 55.8 49 59.2
PSO384G4480 Papaver somniferum HOM05D003126 ORTHO05D005034 1.2e-06 55.8 49 59.2
BcaB04g21048 Brassica carinata HOM05D003126 ORTHO05D005034 1.6e-06 55.5 56 53.6
MELO3C023966.2 Cucumis melo HOM05D003126 ORTHO05D005034 1.6e-06 55.5 59 52.5
Carub.0003s1199 Capsella rubella HOM05D003126 ORTHO05D005034 2.1e-06 55.1 53 54.7
CsaV3_3G032240 Cucumis sativus L. HOM05D003126 ORTHO05D005034 2.1e-06 55.1 44 61.4
ATR0605G133 Amborella trichopoda HOM05D003126 ORTHO05D005034 2.7e-06 54.7 47 59.6
ClCG10G012470 Citrullus lanatus HOM05D003126 ORTHO05D005034 2.7e-06 54.7 44 61.4
PGR044G1687 Punica granatum HOM05D003126 ORTHO05D005034 2.7e-06 54.7 56 55.4
unitig_85.g27215 Utricularia gibba HOM05D003126 ORTHO05D005034 3.6e-06 54.3 56 55.4
Zm00001eb079940 Zea mays HOM05D003126 ORTHO05D005034 4.7e-06 53.9 38 65.8
Lalb_Chr19g0132091 Lupinus albus HOM05D003126 ORTHO05D005034 6.1e-06 53.5 43 62.8
SEGI_13079 Sequoiadendron giganteum HOM05D003126 ORTHO05D005034 6.1e-06 53.5 45 55.6
THA.LOC104809863 Tarenaya hassleriana HOM05D003126 ORTHO05D005034 6.1e-06 53.5 37 64.9
Aa31LG3G10 Aethionema arabicum HOM05D003126 ORTHO05D005034 7.9e-06 53.1 44 61.4
C01p52530 Brassica napus HOM05D003126 ORTHO05D005034 7.9e-06 53.1 56 51.8
Ca_23876_v3 Cicer arietinum L. HOM05D003126 ORTHO05D005034 7.9e-06 53.1 53 50.9
Sed0019357 Sechium edule HOM05D003126 ORTHO05D005034 7.9e-06 53.1 47 55.3


User provided reference genes

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