Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0103351 Helianthus annuus HOM05D004371 ORTHO05D002186 8.1e-73 276.9 137 100.0
HanXRQChr02g0038061 Helianthus annuus HOM05D004371 ORTHO05D002186 2.1e-36 156.0 127 63.0
Lsat_1_v5_gn_1_23100 Lactuca sativa HOM05D004371 ORTHO05D002186 4.7e-36 154.8 124 64.5
HanXRQChr04g0103321 Helianthus annuus HOM05D004371 ORTHO05D002186 9.7e-34 147.1 126 65.1
HanXRQChr09g0267301 Helianthus annuus HOM05D004371 ORTHO05D002186 5.0e-30 134.8 93 71.0
Lsat_1_v5_gn_6_109301 Lactuca sativa HOM05D004371 ORTHO05D002186 1.1e-29 133.7 113 60.2
Lsat_1_v5_gn_4_129880 Lactuca sativa HOM05D004371 ORTHO05D002186 3.2e-29 132.1 86 73.3
Lj4C65T11 Lonicera japonica HOM05D004371 ORTHO05D002186 1.2e-28 130.2 84 76.2
CiPaw.15G050400 Carya illinoinensis HOM05D004371 ORTHO05D002186 1.8e-27 126.3 116 57.8
HanXRQChr05g0150141 Helianthus annuus HOM05D004371 ORTHO05D002186 6.7e-27 124.4 123 51.2
Manes.05G178400 Manihot esculenta HOM05D004371 ORTHO05D002186 1.1e-26 123.6 114 58.8
PGR083G0083 Punica granatum HOM05D004371 ORTHO05D002186 1.5e-26 123.2 81 74.1
vmacro04572 Vaccinium macrocarpon HOM05D004371 ORTHO05D002186 1.5e-26 123.2 123 56.1
Dinv39259 Davidia involucrata HOM05D004371 ORTHO05D002186 2.0e-26 122.9 83 75.9
Potri.002G122300 Populus trichocarpa HOM05D004371 ORTHO05D002186 2.0e-26 122.9 113 54.0
Sabra14G0014700 Salix brachista HOM05D004371 ORTHO05D002186 2.0e-26 122.9 81 71.6
CSS0047169 Camellia sinensis var. sinensis HOM05D004371 ORTHO05D002186 2.6e-26 122.5 114 57.0
Hma1.2p1_0240F.1_g100160 Hydrangea macrophylla HOM05D004371 ORTHO05D002186 2.6e-26 122.5 88 68.2
Prupe.1G429300 Prunus persica HOM05D004371 ORTHO05D002186 2.6e-26 122.5 109 56.9
Potri.014G022100 Populus trichocarpa HOM05D004371 ORTHO05D002186 3.3e-26 122.1 81 71.6
ECA247G1975 Erigeron canadensis HOM05D004371 ORTHO05D002186 4.4e-26 121.7 107 58.9
CiPaw.16G035400 Carya illinoinensis HOM05D004371 ORTHO05D002186 5.7e-26 121.3 81 74.1
CsaV3_4G034760 Cucumis sativus L. HOM05D004371 ORTHO05D002186 5.7e-26 121.3 123 51.2
QL02p003441 Quercus lobata HOM05D004371 ORTHO05D002186 7.4e-26 120.9 83 72.3
DCAR_012798 Daucus carota HOM05D004371 ORTHO05D002186 9.7e-26 120.6 126 53.2
Sp7g22190 Schrenkiella parvula HOM05D004371 ORTHO05D002186 1.3e-25 120.2 124 54.8
Aa31LG7G10250 Aethionema arabicum HOM05D004371 ORTHO05D002186 1.7e-25 119.8 80 71.2
Actinidia38086 Actinidia chinensis HOM05D004371 ORTHO05D002186 2.2e-25 119.4 113 54.0
Cpa.g.sc21.140 Carica papaya HOM05D004371 ORTHO05D002186 2.2e-25 119.4 83 71.1
CiPaw.16G035500 Carya illinoinensis HOM05D004371 ORTHO05D002186 2.2e-25 119.4 114 55.3
Cfa018041 Carpinus fangiana HOM05D004371 ORTHO05D002186 4.8e-25 118.2 83 71.1
Haze_18084 Corylus avellana HOM05D004371 ORTHO05D002186 4.8e-25 118.2 83 71.1
Dinv35916 Davidia involucrata HOM05D004371 ORTHO05D002186 4.8e-25 118.2 126 54.0
Sc15g0005500 Simmondsia chinensis HOM05D004371 ORTHO05D002186 4.8e-25 118.2 85 69.4
Sc15g0005820 Simmondsia chinensis HOM05D004371 ORTHO05D002186 4.8e-25 118.2 85 69.4
Medtr3g102470 Medicago truncatula HOM05D004371 ORTHO05D002186 6.3e-25 117.9 123 52.0
RcHm_v2.0_Chr6g0308861 Rosa chinensis HOM05D004371 ORTHO05D002186 6.3e-25 117.9 81 67.9
Carub.0007s1686 Capsella rubella HOM05D004371 ORTHO05D002186 8.2e-25 117.5 113 54.9
MD15G1075800 Malus domestica HOM05D004371 ORTHO05D002186 8.2e-25 117.5 110 53.6
MELO3C016791.2 Cucumis melo HOM05D004371 ORTHO05D002186 1.1e-24 117.1 123 51.2
TWI09G1286 Tripterygium wilfordii HOM05D004371 ORTHO05D002186 1.1e-24 117.1 114 55.3
BcaC09g50896 Brassica carinata HOM05D004371 ORTHO05D002186 1.4e-24 116.7 80 72.5
A01p15540 Brassica napus HOM05D004371 ORTHO05D002186 1.4e-24 116.7 80 72.5
C01p19460 Brassica napus HOM05D004371 ORTHO05D002186 1.4e-24 116.7 80 72.5
BolC1t01875H Brassica oleracea HOM05D004371 ORTHO05D002186 1.4e-24 116.7 80 72.5
MD08G1091700 Malus domestica HOM05D004371 ORTHO05D002186 1.4e-24 116.7 81 66.7
Psat5g040440 Pisum sativum HOM05D004371 ORTHO05D002186 1.4e-24 116.7 80 68.8
BraA01t01493Z Brassica rapa HOM05D004371 ORTHO05D002186 1.8e-24 116.3 80 72.5
AT4G24210 Arabidopsis thaliana HOM05D004371 ORTHO05D002186 2.4e-24 115.9 81 69.1
BcaC06g32900 Brassica carinata HOM05D004371 ORTHO05D002186 2.4e-24 115.9 88 63.6
BcaNung01127 Brassica carinata HOM05D004371 ORTHO05D002186 2.4e-24 115.9 80 71.2
Cfa004067 Carpinus fangiana HOM05D004371 ORTHO05D002186 3.1e-24 115.5 100 58.0
ECA246G0242 Erigeron canadensis HOM05D004371 ORTHO05D002186 3.1e-24 115.5 83 65.1
Glyma.06G043400 Glycine max HOM05D004371 ORTHO05D002186 3.1e-24 115.5 80 68.8
Phvul.009G068500 Phaseolus vulgaris HOM05D004371 ORTHO05D002186 3.1e-24 115.5 80 68.8
Thecc.08G095700 Theobroma cacao HOM05D004371 ORTHO05D002186 3.1e-24 115.5 81 69.1
VMungo1383G3095 Vigna mungo HOM05D004371 ORTHO05D002186 3.1e-24 115.5 80 68.8
Haze_15343 Corylus avellana HOM05D004371 ORTHO05D002186 4.1e-24 115.2 100 58.0
FvH4_2g33690 Fragaria vesca HOM05D004371 ORTHO05D002186 4.1e-24 115.2 81 65.4
FAN24G0693 Fragaria x ananassa HOM05D004371 ORTHO05D002186 4.1e-24 115.2 81 65.4
Rhsim07G0223800 Rhododendron simsii HOM05D004371 ORTHO05D002186 4.1e-24 115.2 127 48.8
Ca_15926_v3 Cicer arietinum L. HOM05D004371 ORTHO05D002186 5.3e-24 114.8 125 48.8
Thhalv10026481m.g Eutrema salsugineum HOM05D004371 ORTHO05D002186 5.3e-24 114.8 119 54.6
Glyma.04G042900 Glycine max HOM05D004371 ORTHO05D002186 5.3e-24 114.8 80 68.8
TPR.G25607 Trifolium pratense HOM05D004371 ORTHO05D002186 5.3e-24 114.8 80 67.5
CANSAT01G0966 Cannabis sativa HOM05D004371 ORTHO05D002186 7.0e-24 114.4 81 67.9
Gohir.D05G264800 Gossypium hirsutum HOM05D004371 ORTHO05D002186 9.1e-24 114.0 81 69.1
Gorai.009G276600 Gossypium raimondii HOM05D004371 ORTHO05D002186 9.1e-24 114.0 81 69.1
Sed0008652 Sechium edule HOM05D004371 ORTHO05D002186 9.1e-24 114.0 83 66.3
FAN15G2080 Fragaria x ananassa HOM05D004371 ORTHO05D002186 1.2e-23 113.6 81 64.2
FAN20G0811 Fragaria x ananassa HOM05D004371 ORTHO05D002186 1.2e-23 113.6 81 64.2
TWI56G0459 Tripterygium wilfordii HOM05D004371 ORTHO05D002186 1.2e-23 113.6 109 56.9
VMungo1309G1530 Vigna mungo HOM05D004371 ORTHO05D002186 1.2e-23 113.6 80 67.5
AL7G29060 Arabidopsis lyrata HOM05D004371 ORTHO05D002186 1.6e-23 113.2 111 55.9
ClCG05G020280 Citrullus lanatus HOM05D004371 ORTHO05D002186 1.6e-23 113.2 83 65.1
FAN27G3108 Fragaria x ananassa HOM05D004371 ORTHO05D002186 1.6e-23 113.2 81 64.2
Sed0011342 Sechium edule HOM05D004371 ORTHO05D002186 1.6e-23 113.2 123 48.8
Lj1g0004679 Lotus japonicus HOM05D004371 ORTHO05D002186 2.0e-23 112.8 124 50.8
CARHR231630 Cardamine hirsuta HOM05D004371 ORTHO05D002186 2.6e-23 112.5 80 67.5
CDE04G3464 Ceratophyllum demersum HOM05D004371 ORTHO05D002186 2.6e-23 112.5 81 64.2
Lalb_Chr11g0062751 Lupinus albus HOM05D004371 ORTHO05D002186 2.6e-23 112.5 82 64.6
THA.LOC104825757 Tarenaya hassleriana HOM05D004371 ORTHO05D002186 2.6e-23 112.5 81 69.1
Aqoxy6G02847 Aquilegia oxysepala HOM05D004371 ORTHO05D002186 3.5e-23 112.1 123 49.6
Actinidia08268 Actinidia chinensis HOM05D004371 ORTHO05D002186 4.5e-23 111.7 124 54.0
COL.COLO4_03644 Corchorus olitorius HOM05D004371 ORTHO05D002186 4.5e-23 111.7 123 52.0
Duzib041G0027 Durio zibethinus HOM05D004371 ORTHO05D002186 7.7e-23 110.9 125 50.4
Nn5g31361 Nelumbo nucifera HOM05D004371 ORTHO05D002186 7.7e-23 110.9 83 62.7
Nn5g31362 Nelumbo nucifera HOM05D004371 ORTHO05D002186 7.7e-23 110.9 83 62.7
Nn5g31363 Nelumbo nucifera HOM05D004371 ORTHO05D002186 7.7e-23 110.9 83 62.7
Duzib093G1937 Durio zibethinus HOM05D004371 ORTHO05D002186 1.0e-22 110.5 81 67.9
Glyma.17G237800 Glycine max HOM05D004371 ORTHO05D002186 1.0e-22 110.5 84 61.9
CDE07G1639 Ceratophyllum demersum HOM05D004371 ORTHO05D002186 1.3e-22 110.2 81 63.0
Ciclev10002417m.g Citrus clementina HOM05D004371 ORTHO05D002186 1.7e-22 109.8 82 65.9
ATR0205G008 Amborella trichopoda HOM05D004371 ORTHO05D002186 3.8e-22 108.6 81 64.2
Gohir.A06G022200 Gossypium hirsutum HOM05D004371 ORTHO05D002186 5.0e-22 108.2 123 48.0
Rhsim06G0057000 Rhododendron simsii HOM05D004371 ORTHO05D002186 5.0e-22 108.2 116 50.0
vmacro23169 Vaccinium macrocarpon HOM05D004371 ORTHO05D002186 5.0e-22 108.2 123 50.4
Ciclev10016890m.g Citrus clementina HOM05D004371 ORTHO05D002186 6.5e-22 107.8 106 51.9
Glyma.14G086600 Glycine max HOM05D004371 ORTHO05D002186 6.5e-22 107.8 107 50.5
Gohir.D06G019600 Gossypium hirsutum HOM05D004371 ORTHO05D002186 8.5e-22 107.5 81 64.2
Gorai.010G023800 Gossypium raimondii HOM05D004371 ORTHO05D002186 8.5e-22 107.5 81 64.2
TAR628G0756 Trochodendron aralioides HOM05D004371 ORTHO05D002186 1.9e-21 106.3 82 58.5
ClCG08G016220 Citrullus lanatus HOM05D004371 ORTHO05D002186 2.5e-21 105.9 104 52.9
Duzib116G0411 Durio zibethinus HOM05D004371 ORTHO05D002186 2.5e-21 105.9 81 65.4
TAR381G0906 Trochodendron aralioides HOM05D004371 ORTHO05D002186 4.2e-21 105.1 80 65.0
MELO3C010832.2 Cucumis melo HOM05D004371 ORTHO05D002186 5.5e-21 104.8 100 52.0
Dinv26873 Davidia involucrata HOM05D004371 ORTHO05D002186 5.5e-21 104.8 80 65.0
Lj5g0006485 Lotus japonicus HOM05D004371 ORTHO05D002186 5.5e-21 104.8 86 55.8
Cc10_g05190 Coffea canephora HOM05D004371 ORTHO05D002186 7.2e-21 104.4 111 54.1
CsaV3_2G026400 Cucumis sativus L. HOM05D004371 ORTHO05D002186 7.2e-21 104.4 91 57.1
Peaxi162Scf00266g00081 Petunia axillaris HOM05D004371 ORTHO05D002186 1.2e-20 103.6 93 58.1
HPP92_004762 Vanilla planifolia HOM05D004371 ORTHO05D002186 1.6e-20 103.2 99 54.5
HPP92_027899 Vanilla planifolia HOM05D004371 ORTHO05D002186 1.6e-20 103.2 99 54.5
Nitab4.5_0001984g0070 Nicotiana tabacum HOM05D004371 ORTHO05D002186 2.1e-20 102.8 90 60.0
Solyc04g078390.3 Solanum lycopersicum HOM05D004371 ORTHO05D002186 2.1e-20 102.8 114 51.8
Aqoxy5G01137 Aquilegia oxysepala HOM05D004371 ORTHO05D002186 2.7e-20 102.4 81 58.0
Gohir.A05G262600 Gossypium hirsutum HOM05D004371 ORTHO05D002186 2.7e-20 102.4 81 64.2
CAN.G1621.8 Capsicum annuum HOM05D004371 ORTHO05D002186 4.7e-20 101.7 128 46.9
CiPaw.02G005700 Carya illinoinensis HOM05D004371 ORTHO05D002186 4.7e-20 101.7 83 62.7
Nitab4.5_0005426g0010 Nicotiana tabacum HOM05D004371 ORTHO05D002186 4.7e-20 101.7 118 52.5
EL10Ac1g00574 Beta vulgaris HOM05D004456 ORTHO05D005287 8.0e-20 100.9 117 47.0
Sopen04g031990 Solanum pennellii HOM05D004371 ORTHO05D002186 1.0e-19 100.5 91 58.2
PSO210G6412 Papaver somniferum HOM05D004371 ORTHO05D002186 2.3e-19 99.4 77 62.3
Atru.chr13.769 Acer truncatum HOM05D004371 ORTHO05D002186 4.0e-19 98.6 118 48.3
Ah.06g192890 Amaranthus hybridus HOM05D004371 ORTHO05D002186 4.0e-19 98.6 76 60.5
PSO349G0342 Papaver somniferum HOM05D004371 ORTHO05D002186 4.0e-19 98.6 83 57.8
PSO017G6350 Papaver somniferum HOM05D004371 ORTHO05D002186 5.2e-19 98.2 83 56.6
PSO170G2383 Papaver somniferum HOM05D004371 ORTHO05D002186 5.2e-19 98.2 77 62.3
PGSC0003DMG400003310 Solanum tuberosum HOM05D004371 ORTHO05D002186 6.8e-19 97.8 114 49.1
Migut.C00522 Erythranthe guttata HOM05D004371 ORTHO05D002186 2.6e-18 95.9 119 47.9
SHI08356 Sapria himalayana HOM05D004371 ORTHO05D002186 2.8e-17 92.4 113 45.1
SEGI_33552 Sequoiadendron giganteum HOM05D004371 ORTHO05D002186 2.8e-17 92.4 79 57.0
SGA_v2.0_scaffold197G41047 Striga asiatica HOM05D004371 ORTHO05D002186 3.7e-17 92.0 85 57.6
Oeu021393.1 Olea europaea HOM05D004371 ORTHO05D002186 1.4e-16 90.1 113 49.6
Oeu057260.2 Olea europaea HOM05D004371 ORTHO05D002186 1.4e-16 90.1 90 55.6
SalBow7G3528 Salvia bowleyana HOM05D004371 ORTHO05D002186 4.1e-16 88.6 115 47.0
Eucgr.F00160 Eucalyptus grandis HOM05D004371 ORTHO05D002186 5.3e-16 88.2 63 71.4
Nn1g04458 Nelumbo nucifera HOM05D004371 ORTHO05D002186 7.7e-15 84.3 84 51.2
Thhalv10000501m.g Eutrema salsugineum HOM05D004371 ORTHO05D002186 1.7e-14 83.2 67 58.2
SMO271G0134 Selaginella moellendorffii HOM05D004371 ORTHO05D002186 3.8e-14 82.0 101 41.6
Zm00001eb245180 Zea mays HOM05D004371 ORTHO05D002186 6.5e-14 81.3 98 43.9
MSTRG.25064 Avicennia marina HOM05D004371 ORTHO05D002186 4.2e-13 78.6 82 52.4
unitig_748.g7786 Utricularia gibba HOM05D004371 ORTHO05D002186 1.2e-12 77.0 124 35.5
Zm00001eb183250 Zea mays HOM05D004371 ORTHO05D002186 1.2e-12 77.0 77 48.1
Mapoly0043s0052 Marchantia polymorpha HOM05D004371 ORTHO05D002186 2.1e-12 76.3 85 44.7
Ciclev10017723m.g Citrus clementina HOM05D004371 ORTHO05D002186 8.8e-11 70.9 79 49.4
Sc02g0007590 Simmondsia chinensis HOM05D004371 ORTHO05D002186 1.5e-10 70.1 56 60.7
SEGI_26864 Sequoiadendron giganteum HOM05D004371 ORTHO05D002186 1.3e-09 67.0 76 39.5
Ciclev10023649m.g Citrus clementina HOM05D003131 ORTHO05D002186 1.7e-09 66.6 71 50.7
SEGI_08538 Sequoiadendron giganteum HOM05D004371 ORTHO05D002186 3.7e-09 65.5 73 43.8
Ciclev10024024m.g Citrus clementina HOM05D004371 ORTHO05D002186 4.8e-09 65.1 71 50.7
SEGI_31117 Sequoiadendron giganteum HOM05D004371 ORTHO05D002186 1.1e-08 63.9 91 39.6
Nn4g24474 Nelumbo nucifera HOM05D004371 ORTHO05D002186 4.1e-08 62.0 45 62.2
ATR1101G053 Amborella trichopoda HOM05D004371 ORTHO05D002186 5.4e-08 61.6 77 37.7
QL07p030524 Quercus lobata HOM05D004371 ORTHO05D002186 9.1e-08 60.8 85 44.7
MD14G1062200 Malus domestica HOM05D004371 ORTHO05D002186 1.2e-07 60.5 44 56.8
SEGI_04440 Sequoiadendron giganteum HOM05D004371 ORTHO05D002186 1.6e-07 60.1 119 30.3
CDE05G0636 Ceratophyllum demersum HOM05D004982 ORTHO05D002186 3.8e-06 55.5 75 30.7
HanXRQChr03g0075171 Helianthus annuus HOM05D004982 ORTHO05D002186 5.0e-06 55.1 81 39.5
Cpa.g.sc211.16 Carica papaya HOM05D004982 ORTHO05D002186 6.6e-06 54.7 75 37.3
Oeu064360.1 Olea europaea HOM05D004982 ORTHO05D002186 6.6e-06 54.7 87 33.3


User provided reference genes

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