Gene: AT4G24210
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G24210
- Transcript Identifier AT4G24210.1
- Gene Type Coding gene
- Location Chr4 : 12563658-12564113 : positive
Gene Family Information
- ID HOM05D004371
- #Genes/#Species 163/87
- Phylogenetic origin
- ID ORTHO05D002186
- #Genes/#Species 309/92
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G24210.1
- symbol SLY1
- full_name SLEEPY1
- uniprot Q9STX3
Descriptions
- Description F-box family protein
- Computational description SLEEPY1 (SLY1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G48170.1); Has 122 Blast hits to 122 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 9; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009938 | IGI | Gene Ontology | negative regulation of gibberellic acid mediated signaling pathway | 1 |
| GO:0031146 | IEA | GOA Database | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | |
| GO:0031146 | IBA | Gene Ontology | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 2 |
| GO:0031146 | IEA | InterPro | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | |
| GO:0009740 | IEA | GOA Database | gibberellic acid mediated signaling pathway | |
| GO:0009740 | IBA | Gene Ontology | gibberellic acid mediated signaling pathway | 2 |
| GO:0010162 | IMP | Gene Ontology | seed dormancy process | 3 |
| GO:0009845 | IMP, IGI | Gene Ontology | seed germination | 3 4 |
| GO:0009939 | IMP | Gene Ontology | positive regulation of gibberellic acid mediated signaling pathway | 5 |
| GO:0009739 | IGI | Gene Ontology | response to gibberellin | 6 |
| GO:0016567 | IEA | Gene Ontology | protein ubiquitination |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 7 |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0019005 | IEA | GOA Database | SCF ubiquitin ligase complex | |
| GO:0019005 | IPI IBA | Gene Ontology | SCF ubiquitin ligase complex | 2 8 |
| GO:0019005 | IEA | InterPro | SCF ubiquitin ligase complex | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 7 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 11.6.2.3 | Phytohormone action.gibberellin.perception and signal transduction.substrate adaptor of SCF ubiquitin ligase (SLY) |