Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0095851 Helianthus annuus HOM05D002863 ORTHO05D005691 2.8e-91 338.6 168 100.0
ECA236G4457 Erigeron canadensis HOM05D002863 ORTHO05D005691 2.2e-43 179.5 204 52.5
Lsat_1_v5_gn_9_80360 Lactuca sativa HOM05D002863 ORTHO05D005691 3.8e-40 168.7 137 65.7
Oeu018974.1 Olea europaea HOM05D002863 ORTHO05D005691 4.5e-33 145.2 117 62.4
Nitab4.5_0000321g0190 Nicotiana tabacum HOM05D002863 ORTHO05D005691 1.0e-32 144.1 118 58.5
Nitab4.5_0006783g0030 Nicotiana tabacum HOM05D002863 ORTHO05D005691 2.9e-32 142.5 118 56.8
HanXRQChr02g0033141 Helianthus annuus HOM05D002863 ORTHO05D005691 3.8e-32 142.1 165 52.7
Cc03_g04040 Coffea canephora HOM05D002863 ORTHO05D005691 1.1e-31 140.6 123 57.7
CSS0031002 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 3.2e-31 139.0 132 53.8
Sopen06g019210 Solanum pennellii HOM05D002863 ORTHO05D005691 9.4e-31 137.5 153 45.8
Lj3E732T0 Lonicera japonica HOM05D002863 ORTHO05D005691 1.2e-30 137.1 119 58.8
Thecc.05G291200 Theobroma cacao HOM05D002863 ORTHO05D005691 1.2e-30 137.1 193 44.0
Peaxi162Scf00131g00027 Petunia axillaris HOM05D002863 ORTHO05D005691 2.7e-30 136.0 126 53.2
CSS0024605 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 3.6e-30 135.6 132 53.0
CSS0027055 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 3.6e-30 135.6 132 53.0
Solyc06g054050.3 Solanum lycopersicum HOM05D002863 ORTHO05D005691 3.6e-30 135.6 193 39.9
PGSC0003DMG400016310 Solanum tuberosum HOM05D002863 ORTHO05D005691 3.6e-30 135.6 117 54.7
CAN.G231.13 Capsicum annuum HOM05D002863 ORTHO05D005691 6.1e-30 134.8 157 43.3
Nn1g02374 Nelumbo nucifera HOM05D002863 ORTHO05D005691 6.1e-30 134.8 155 49.7
PGSC0003DMG400016265 Solanum tuberosum HOM05D002863 ORTHO05D005691 6.1e-30 134.8 168 45.2
Dinv14015 Davidia involucrata HOM05D002863 ORTHO05D005691 8.0e-30 134.4 117 59.8
Solyc06g054020.3 Solanum lycopersicum HOM05D002863 ORTHO05D005691 1.0e-29 134.0 117 53.0
Sopen06g019190 Solanum pennellii HOM05D002863 ORTHO05D005691 1.0e-29 134.0 117 53.0
Cc02_g31310 Coffea canephora HOM05D002863 ORTHO05D005691 2.3e-29 132.9 161 46.0
COL.COLO4_13640 Corchorus olitorius HOM05D002863 ORTHO05D005691 3.0e-29 132.5 192 40.6
PSO210G3945 Papaver somniferum HOM05D002863 ORTHO05D005691 4.0e-29 132.1 141 48.9
ClCG06G006340 Citrullus lanatus HOM05D002863 ORTHO05D005691 5.2e-29 131.7 141 48.9
CsaV3_7G022380 Cucumis sativus L. HOM05D002863 ORTHO05D005691 6.8e-29 131.3 141 48.9
Rhsim04G0200000 Rhododendron simsii HOM05D002863 ORTHO05D005691 8.8e-29 131.0 164 45.7
Aqoxy5G00438 Aquilegia oxysepala HOM05D002863 ORTHO05D005691 1.2e-28 130.6 141 47.5
Migut.G00361 Erythranthe guttata HOM05D002863 ORTHO05D005691 1.2e-28 130.6 126 53.2
Sed0023639 Sechium edule HOM05D002863 ORTHO05D005691 1.2e-28 130.6 141 48.2
PSO832G1692 Papaver somniferum HOM05D002863 ORTHO05D005691 2.0e-28 129.8 141 48.2
Duzib177G0218 Durio zibethinus HOM05D002863 ORTHO05D005691 2.6e-28 129.4 193 42.0
DCAR_002375 Daucus carota HOM05D002863 ORTHO05D005691 3.4e-28 129.0 194 41.8
Dinv17741 Davidia involucrata HOM05D002863 ORTHO05D005691 3.4e-28 129.0 141 50.4
HanXRQChr04g0115181 Helianthus annuus HOM05D002863 ORTHO05D005691 4.4e-28 128.6 109 59.6
RcHm_v2.0_Chr4g0415581 Rosa chinensis HOM05D002863 ORTHO05D005691 4.4e-28 128.6 169 45.6
MELO3C012664.2 Cucumis melo HOM05D002863 ORTHO05D005691 5.7e-28 128.3 141 48.2
SGA_v2.0_scaffold191G40493 Striga asiatica HOM05D002863 ORTHO05D005691 5.7e-28 128.3 126 51.6
CSS0007282 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 9.8e-28 127.5 126 51.6
CSS0000686 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 1.3e-27 127.1 126 51.6
CSS0037612 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 1.3e-27 127.1 126 51.6
Gohir.D11G266600 Gossypium hirsutum HOM05D002863 ORTHO05D005691 1.3e-27 127.1 160 47.5
COL.COLO4_21516 Corchorus olitorius HOM05D002863 ORTHO05D005691 4.8e-27 125.2 194 42.8
Eucgr.H04399 Eucalyptus grandis HOM05D002863 ORTHO05D005691 4.8e-27 125.2 176 43.2
SalBow2G0283 Salvia bowleyana HOM05D002863 ORTHO05D005691 6.3e-27 124.8 199 37.2
TWI12G1273 Tripterygium wilfordii HOM05D002863 ORTHO05D005691 6.3e-27 124.8 126 50.0
TAR636G1187 Trochodendron aralioides HOM05D002863 ORTHO05D005691 6.3e-27 124.8 158 45.6
Gorai.007G286400 Gossypium raimondii HOM05D002863 ORTHO05D005691 1.1e-26 124.0 195 42.1
Gohir.A11G256800 Gossypium hirsutum HOM05D002863 ORTHO05D005691 1.4e-26 123.6 161 46.0
GSVIVG01018011001 Vitis vinifera HOM05D002863 ORTHO05D005691 1.4e-26 123.6 192 38.5
PGR004G0456 Punica granatum HOM05D002863 ORTHO05D005691 1.8e-26 123.2 160 42.5
FAN17G1329 Fragaria x ananassa HOM05D002863 ORTHO05D005691 3.1e-26 122.5 170 42.4
Ciclev10004283m.g Citrus clementina HOM05D002863 ORTHO05D005691 4.1e-26 122.1 192 42.2
FAN07G0972 Fragaria x ananassa HOM05D002863 ORTHO05D005691 4.1e-26 122.1 170 42.4
FAN12G0500 Fragaria x ananassa HOM05D002863 ORTHO05D005691 4.1e-26 122.1 170 42.4
FvH4_4g15972 Fragaria vesca HOM05D002863 ORTHO05D005691 9.1e-26 120.9 160 43.1
Gohir.A09G217400 Gossypium hirsutum HOM05D002863 ORTHO05D005691 9.1e-26 120.9 162 45.1
MBI05_g12094_MAGBIO Magnolia biondii HOM05D002863 ORTHO05D005691 1.6e-25 120.2 128 46.9
Cpa.g.sc117.40 Carica papaya HOM05D002863 ORTHO05D005691 2.7e-25 119.4 192 39.6
Gohir.D09G219800 Gossypium hirsutum HOM05D002863 ORTHO05D005691 3.5e-25 119.0 162 44.4
Gorai.006G240800 Gossypium raimondii HOM05D002863 ORTHO05D005691 3.5e-25 119.0 162 44.4
THA.LOC104800956 Tarenaya hassleriana HOM05D002863 ORTHO05D005691 3.5e-25 119.0 195 40.0
Lalb_Chr16g0376481 Lupinus albus HOM05D002863 ORTHO05D005691 4.5e-25 118.6 161 44.1
Prupe.1G017300 Prunus persica HOM05D002863 ORTHO05D005691 7.7e-25 117.9 150 45.3
CANSAT78G2191 Cannabis sativa HOM05D002863 ORTHO05D005691 1.0e-24 117.5 171 42.1
MD13G1196500 Malus domestica HOM05D002863 ORTHO05D005691 1.7e-24 116.7 141 46.8
BcaB02g06857 Brassica carinata HOM05D002863 ORTHO05D005691 2.2e-24 116.3 159 42.1
CiPaw.01G198300 Carya illinoinensis HOM05D002863 ORTHO05D005691 2.9e-24 115.9 194 39.2
Duzib151G1175 Durio zibethinus HOM05D002863 ORTHO05D005691 2.9e-24 115.9 146 43.2
Sp1g04340 Schrenkiella parvula HOM05D002863 ORTHO05D005691 2.9e-24 115.9 160 45.6
BcaC05g24383 Brassica carinata HOM05D002863 ORTHO05D005691 3.8e-24 115.5 159 42.8
C05p03810 Brassica napus HOM05D002863 ORTHO05D005691 3.8e-24 115.5 159 42.8
BolC5t29158H Brassica oleracea HOM05D002863 ORTHO05D005691 3.8e-24 115.5 159 42.8
Psat2g190040 Pisum sativum HOM05D002863 ORTHO05D005691 5.0e-24 115.2 164 43.3
Phvul.002G042600 Phaseolus vulgaris HOM05D002863 ORTHO05D005691 6.5e-24 114.8 141 46.1
LjContig00222g0014636 Lotus japonicus HOM05D002863 ORTHO05D005691 8.5e-24 114.4 192 38.0
TWI53G0907 Tripterygium wilfordii HOM05D002863 ORTHO05D005691 8.5e-24 114.4 143 44.8
Thhalv10006684m.g Eutrema salsugineum HOM05D002863 ORTHO05D005691 1.1e-23 114.0 127 49.6
Glyma.01G235200 Glycine max HOM05D002863 ORTHO05D005691 1.1e-23 114.0 192 38.0
Thecc.04G235200 Theobroma cacao HOM05D002863 ORTHO05D005691 1.1e-23 114.0 141 44.7
BraA10t42687Z Brassica rapa HOM05D002863 ORTHO05D005691 1.5e-23 113.6 159 43.4
Ca_24420_v3 Cicer arietinum L. HOM05D002863 ORTHO05D005691 1.5e-23 113.6 192 38.5
Nitab4.5_0002361g0230 Nicotiana tabacum HOM05D002863 ORTHO05D005691 1.5e-23 113.6 117 50.4
Atru.chr4.2430 Acer truncatum HOM05D002863 ORTHO05D005691 3.2e-23 112.5 193 38.3
Aa31LG1G19180 Aethionema arabicum HOM05D002863 ORTHO05D005691 3.2e-23 112.5 159 39.6
Medtr5g006890 Medicago truncatula HOM05D002863 ORTHO05D005691 3.2e-23 112.5 165 43.6
arahy.Tifrunner.gnm1.ann1.IF8NHZ Arachis hypogaea HOM05D002863 ORTHO05D005691 4.2e-23 112.1 192 37.0
arahy.Tifrunner.gnm1.ann1.SX262Z Arachis hypogaea HOM05D002863 ORTHO05D005691 4.2e-23 112.1 192 37.5
Medtr2g049990 Medicago truncatula HOM05D002863 ORTHO05D005691 4.2e-23 112.1 165 43.6
Zm00001eb004540 Zea mays HOM05D002863 ORTHO05D005691 4.2e-23 112.1 124 46.0
A10p04180 Brassica napus HOM05D002863 ORTHO05D005691 5.5e-23 111.7 159 42.8
Os03g0160400 Oryza sativa ssp. japonica HOM05D002863 ORTHO05D005691 5.5e-23 111.7 115 47.8
Potri.005G047500 Populus trichocarpa HOM05D002863 ORTHO05D005691 5.5e-23 111.7 152 42.8
A08p08300 Brassica napus HOM05D002863 ORTHO05D005691 7.2e-23 111.3 150 44.7
ATR0665G272 Amborella trichopoda HOM05D002863 ORTHO05D005691 9.4e-23 110.9 161 36.6
Haze_11201 Corylus avellana HOM05D002863 ORTHO05D005691 9.4e-23 110.9 126 46.8
Manes.03G175900 Manihot esculenta HOM05D002863 ORTHO05D005691 9.4e-23 110.9 141 45.4
Hund10646 Selenicereus undatus HOM05D002863 ORTHO05D005691 2.1e-22 109.8 137 45.3
Eucgr.H03436 Eucalyptus grandis HOM05D002863 ORTHO05D005691 2.7e-22 109.4 115 47.8
EL10Ac4g09337 Beta vulgaris HOM05D002863 ORTHO05D005691 3.6e-22 109.0 185 40.5
AL1G15300 Arabidopsis lyrata HOM05D002863 ORTHO05D005691 6.1e-22 108.2 152 42.8
CARHR004950 Cardamine hirsuta HOM05D002863 ORTHO05D005691 6.1e-22 108.2 160 39.4
TPR.G38022 Trifolium pratense HOM05D002863 ORTHO05D005691 6.1e-22 108.2 164 42.7
Cfa008472 Carpinus fangiana HOM05D002863 ORTHO05D005691 1.0e-21 107.5 126 46.0
CDE06G1398 Ceratophyllum demersum HOM05D002863 ORTHO05D005691 1.8e-21 106.7 194 34.0
Sc13g0004580 Simmondsia chinensis HOM05D002863 ORTHO05D005691 2.3e-21 106.3 185 39.5
VMungo0251G0587 Vigna mungo HOM05D002863 ORTHO05D005691 3.0e-21 105.9 141 42.6
VMungo1215G2311 Vigna mungo HOM05D002863 ORTHO05D005691 3.0e-21 105.9 171 39.2
QL06p001686 Quercus lobata HOM05D002863 ORTHO05D005691 4.0e-21 105.5 126 42.9
AT1G05460 Arabidopsis thaliana HOM05D002863 ORTHO05D005691 5.2e-21 105.1 126 46.0
Zm00001eb403310 Zea mays HOM05D002863 ORTHO05D005691 5.2e-21 105.1 124 44.4
AUR62000846 Chenopodium quinoa HOM05D002863 ORTHO05D005691 8.8e-21 104.4 145 40.7
Potri.008G155400 Populus trichocarpa HOM05D002863 ORTHO05D005691 1.2e-20 104.0 164 42.1
AUR62005129 Chenopodium quinoa HOM05D002863 ORTHO05D005691 1.5e-20 103.6 145 40.7
CDE07G0808 Ceratophyllum demersum HOM05D002863 ORTHO05D005691 5.7e-20 101.7 126 42.9
Carub.0001s0479 Capsella rubella HOM05D002863 ORTHO05D005691 1.3e-19 100.5 150 42.0
PGR004G1808 Punica granatum HOM05D002863 ORTHO05D005691 2.2e-19 99.8 159 36.5
HPP92_006123 Vanilla planifolia HOM05D002863 ORTHO05D005691 1.4e-18 97.1 126 40.5
TAR260G0006 Trochodendron aralioides HOM05D002863 ORTHO05D005691 5.9e-17 91.7 89 53.9
Sed0008697 Sechium edule HOM05D002863 ORTHO05D005691 1.0e-16 90.9 141 40.4
Ciclev10000353m.g Citrus clementina HOM05D002863 ORTHO05D005691 1.4e-13 80.5 102 43.1
HanXRQChr04g0115171 Helianthus annuus HOM05D002863 ORTHO05D005691 1.7e-11 73.6 70 52.9


User provided reference genes

Program Settings