Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 0.0e+00 1417.1 712 100.0
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1273.1 714 89.9
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 0.0e+00 1267.7 751 85.4
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1144.4 714 80.5
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1144.0 719 80.5
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1140.6 719 79.8
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1138.3 713 80.5
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1137.9 710 80.7
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1137.9 723 80.2
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1135.6 715 80.4
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1134.4 728 79.8
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1132.1 705 80.6
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1131.7 721 79.9
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1128.6 731 78.7
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1128.2 713 80.1
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1127.5 665 83.9
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1127.5 711 79.9
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1126.3 710 80.4
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1126.3 715 80.3
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1125.9 713 80.2
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1125.9 731 78.5
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1124.0 722 79.4
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1120.1 705 80.6
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1119.0 716 79.1
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1116.7 704 80.1
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1115.9 696 80.9
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1115.5 721 78.9
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1113.2 715 79.0
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1112.1 710 79.3
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1111.7 686 81.3
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1110.9 703 80.2
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1109.7 687 82.1
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1108.2 719 79.0
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1107.0 707 78.4
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1105.5 740 76.9
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1104.7 708 78.5
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1104.7 711 78.5
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1103.2 714 78.4
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1099.0 696 80.0
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1099.0 719 77.9
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1098.2 701 79.5
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1097.4 711 79.3
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1096.6 709 78.6
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1095.9 719 78.2
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1094.7 635 84.3
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1093.6 714 78.4
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1091.6 638 84.2
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1090.1 716 77.4
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1089.7 713 78.0
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1088.2 717 77.3
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1088.2 710 76.9
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 0.0e+00 1088.2 663 81.7
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1082.8 714 76.3
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1082.8 713 77.3
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1080.9 779 71.1
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1080.9 779 71.1
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1075.1 714 78.3
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 9.7e-312 1073.2 743 75.8
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.9e-311 1072.0 744 75.8
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 6.3e-310 1067.0 685 77.7
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 8.2e-310 1066.6 921 62.9
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 1.1e-309 1066.2 646 81.1
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 1.1e-309 1066.2 718 75.8
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 1.4e-309 1065.8 642 81.5
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 3.1e-309 1064.7 712 75.7
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 5.3e-309 1063.9 719 75.5
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 9.1e-309 1063.1 714 75.9
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 1.2e-308 1062.8 712 75.8
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 1.2e-308 1062.8 712 75.8
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 1.5e-308 1062.4 707 77.5
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 7.7e-308 1060.1 638 80.7
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 2.2e-307 1058.5 640 81.7
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 6.5e-307 1057.0 660 79.5
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 3.2e-306 1054.7 726 74.4
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 2.6e-303 1045.0 725 74.8
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 2.6e-303 1045.0 713 75.6
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 1.4e-301 1039.3 796 69.5
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 1.8e-301 1038.9 711 75.0
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 2.9e-299 1031.6 658 79.3
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 1.8e-296 1022.3 714 73.8
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 1.5e-287 992.6 699 71.0
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 9.8e-287 989.9 738 71.4
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 1.8e-285 985.7 678 71.5
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 1.6e-281 972.6 780 67.4
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 6.1e-281 970.7 663 76.3
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 9.5e-274 946.8 627 73.8
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 2.0e-271 939.1 555 83.4
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.6e-265 919.5 544 84.4
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 6.2e-265 917.5 602 74.9
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 8.0e-265 917.1 565 82.5
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 6.4e-262 907.5 529 84.7
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 2.7e-260 902.1 513 86.4
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 1.1e-258 896.7 556 81.5
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 3.6e-257 891.7 633 71.4
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 4.7e-257 891.3 638 69.4
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 1.4e-256 889.8 517 84.7
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 1.5e-250 869.8 591 75.0
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 5.6e-250 867.8 519 80.7
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 5.8e-247 857.8 632 67.7
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 1.9e-237 826.2 592 70.8
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 3.3e-234 815.5 697 64.1
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 2.6e-231 805.8 466 86.1
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 1.9e-226 789.6 612 65.0
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 7.4e-210 734.6 495 76.0
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 7.0e-192 674.9 386 84.7
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 3.7e-185 652.5 407 81.8
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 1.6e-180 637.1 401 78.3
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 3.2e-173 612.8 352 84.4
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 2.7e-167 593.2 401 73.6
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 1.6e-151 540.8 368 76.6
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.5e-133 481.1 447 59.3
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 1.6e-127 461.1 595 42.5
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 4.6e-127 459.5 640 40.2
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 4.6e-111 406.4 656 39.0
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 2.5e-104 384.0 510 42.9
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 9.3e-104 382.1 366 56.8
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 1.0e-102 378.6 356 58.4
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 1.5e-90 338.2 326 56.4
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 9.1e-83 312.4 214 72.0
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 3.2e-80 303.9 172 87.2
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 1.1e-67 262.3 161 78.9
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 1.6e-58 231.9 187 69.0
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.6e-55 221.9 162 64.8
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 6.3e-52 209.9 196 54.1
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 3.0e-46 191.0 245 50.6
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 5.7e-45 186.8 114 81.6
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 7.3e-40 169.9 185 48.6
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.8e-38 165.2 263 42.6
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 1.2e-37 162.5 105 75.2
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 7.0e-35 153.3 84 90.5
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.3e-33 149.1 141 58.2
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 6.6e-33 146.7 83 86.7
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 9.5e-32 142.9 71 85.9
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 1.4e-30 139.0 112 61.6
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 7.5e-29 133.3 139 53.2
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 1.7e-28 132.1 94 68.1
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 9.2e-27 126.3 80 77.5
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 1.5e-24 119.0 80 75.0
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 1.9e-24 118.6 82 70.7
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 5.4e-19 100.5 47 89.4
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 1.3e-17 95.9 48 87.5
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 4.0e-14 84.3 66 68.2
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 8.9e-14 83.2 143 36.4
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 4.4e-13 80.9 58 62.1
Cpa.g.c37459 Carica papaya HOM05D005018 ORTHO05D043556 9.0e-06 56.6 27 92.6


User provided reference genes

Program Settings