Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 1.1e-189 666.4 326 100.0
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 2.9e-145 518.8 332 77.4
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 3.6e-127 458.8 323 69.7
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 2.5e-120 436.0 312 69.2
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 9.5e-120 434.1 322 66.8
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 1.4e-118 430.3 285 71.6
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.6e-117 426.0 334 62.6
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 4.4e-117 425.2 292 68.8
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 9.8e-117 424.1 320 65.9
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.2e-116 422.9 334 62.0
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 2.2e-116 422.9 286 69.2
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 2.8e-116 422.5 286 69.6
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.8e-116 422.5 284 69.7
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 1.1e-115 420.6 286 69.6
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 4.1e-115 418.7 286 68.2
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 9.2e-115 417.5 287 67.9
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 1.6e-114 416.8 312 63.8
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 2.0e-114 416.4 297 67.3
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 2.7e-114 416.0 307 66.1
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 3.5e-114 415.6 305 66.6
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 4.5e-114 415.2 312 64.4
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 5.9e-114 414.8 324 62.7
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.7e-113 413.3 312 64.1
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 5.0e-113 411.8 289 68.2
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 1.1e-112 410.6 287 67.2
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.1e-112 410.6 328 62.5
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.9e-112 409.8 312 63.5
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.9e-112 409.8 259 72.2
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 1.9e-112 409.8 300 64.7
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 9.5e-112 407.5 299 64.9
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 1.6e-111 406.8 303 66.0
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.1e-111 406.4 286 67.1
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 2.1e-111 406.4 323 61.3
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 2.1e-111 406.4 284 67.6
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 2.1e-111 406.4 286 66.8
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.4e-110 403.7 284 66.9
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.4e-110 403.7 324 62.7
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 1.8e-110 403.3 317 62.1
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 6.8e-110 401.4 289 66.4
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.5e-109 400.2 249 73.9
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 2.0e-109 399.8 328 60.1
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 4.4e-109 398.7 322 62.1
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 7.5e-109 397.9 332 59.9
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 2.2e-108 396.4 324 61.4
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.9e-108 396.0 289 65.7
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 2.9e-108 396.0 355 56.6
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 3.2e-107 392.5 285 66.3
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 4.1e-107 392.1 256 70.3
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 7.0e-107 391.3 287 65.5
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 1.2e-106 390.6 254 70.1
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 1.2e-106 390.6 322 61.5
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 1.6e-106 390.2 287 64.1
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 2.0e-106 389.8 304 62.8
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 3.5e-106 389.0 283 62.9
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.0e-105 387.5 323 61.6
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 5.0e-105 385.2 283 65.7
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 2.5e-104 382.9 285 64.9
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 5.6e-104 381.7 295 62.7
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 9.5e-104 380.9 283 65.0
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 2.1e-103 379.8 250 70.8
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 3.6e-103 379.0 254 68.9
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 1.4e-102 377.1 286 60.5
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 3.1e-102 375.9 310 57.7
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 8.9e-102 374.4 263 66.2
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.2e-101 374.0 286 60.5
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 1.3e-100 370.5 286 60.5
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.3e-100 370.5 290 61.0
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 3.7e-100 369.0 312 57.1
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 4.9e-100 368.6 254 67.7
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 4.9e-100 368.6 288 61.5
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 6.4e-100 368.2 286 59.1
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 8.3e-100 367.9 286 59.4
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 8.3e-100 367.9 349 56.2
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 1.1e-99 367.5 286 60.1
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.9e-99 366.7 221 73.8
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 5.4e-99 365.2 286 59.4
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 5.4e-99 365.2 306 56.9
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 9.2e-99 364.4 251 67.3
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 2.7e-98 362.8 285 57.9
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 7.8e-98 361.3 286 58.4
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 1.0e-97 360.9 286 57.7
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 2.3e-97 359.8 286 58.4
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 4.0e-94 349.0 330 54.2
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 6.8e-94 348.2 199 81.9
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 2.9e-92 342.8 311 55.0
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.7e-89 333.6 266 59.0
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 2.1e-87 326.6 262 58.8
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 6.8e-86 321.6 330 52.4
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 4.9e-84 315.5 238 64.7
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.4e-83 313.9 189 74.1
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 5.4e-83 312.0 286 52.4
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 5.1e-81 305.4 321 52.6
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.3e-80 302.8 289 54.0
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.2e-79 300.8 324 50.6
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 2.1e-79 300.1 256 60.5
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 1.1e-78 297.7 279 50.5
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.8e-78 297.0 188 70.2
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 5.2e-78 295.4 280 49.3
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 8.4e-76 288.1 186 68.8
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.4e-75 287.3 283 52.7
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 4.2e-75 285.8 333 47.7
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 9.3e-75 284.6 299 45.8
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 2.3e-73 280.0 165 75.2
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.6e-71 273.9 279 47.7
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.5e-64 250.8 153 72.5
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 5.6e-64 248.8 299 46.8
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 3.1e-62 243.0 154 69.5
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 4.2e-59 232.6 178 62.4
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.8e-57 227.3 241 51.9
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.6e-56 222.2 241 50.2
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 4.8e-55 219.2 290 45.2
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 2.4e-54 216.9 148 65.5
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.2e-50 204.5 166 59.0
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 1.3e-47 194.5 113 85.8
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 8.5e-44 181.8 229 46.7
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 9.4e-43 178.3 133 65.4
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 1.8e-41 174.1 216 37.0
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 3.9e-41 172.9 127 60.6
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 1.3e-39 167.9 115 63.5
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.7e-39 166.4 195 47.7
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 6.9e-38 162.2 148 54.1
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.8e-33 147.5 292 33.9
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 3.7e-31 139.8 100 66.0
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 3.1e-30 136.7 129 55.8
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 5.3e-30 136.0 100 65.0
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.6e-26 124.4 77 67.5
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 1.4e-25 121.3 102 62.7
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 8.5e-20 102.1 76 59.2
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.3e-17 94.0 67 67.2
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 6.3e-15 85.9 157 40.1
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.7e-13 80.5 111 50.5
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.5e-12 75.9 85 48.2
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 3.7e-07 60.1 70 55.7


User provided reference genes

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