Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 2.1e-238 828.6 398 100.0
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 2.1e-190 669.1 342 92.4
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 3.8e-187 658.3 399 81.2
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 2.3e-184 649.0 403 82.4
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 5.1e-184 647.9 342 90.1
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.8e-182 642.1 404 79.0
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.8e-181 639.4 395 79.5
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.5e-180 636.3 395 79.5
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 4.5e-180 634.8 405 77.8
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 7.6e-180 634.0 352 86.1
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 9.9e-180 633.6 400 78.0
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 1.3e-179 633.3 400 78.2
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 2.2e-179 632.5 396 79.8
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.9e-179 632.1 391 80.3
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 3.8e-179 631.7 398 78.1
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 8.4e-179 630.6 405 78.0
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.9e-178 629.4 400 76.2
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 1.9e-178 629.4 389 79.4
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 2.4e-178 629.0 342 86.8
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 2.4e-178 629.0 401 78.6
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 3.2e-178 628.6 402 78.1
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 4.2e-178 628.2 412 76.0
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 4.2e-178 628.2 358 83.5
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 5.4e-178 627.9 400 78.2
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 5.4e-178 627.9 385 79.5
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 7.1e-178 627.5 345 85.8
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 9.3e-178 627.1 342 86.5
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 9.3e-178 627.1 349 85.7
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 1.6e-177 626.3 385 79.7
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 2.1e-177 625.9 399 77.7
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 2.1e-177 625.9 349 84.8
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.7e-177 625.5 396 79.3
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 4.6e-177 624.8 396 78.0
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 4.6e-177 624.8 407 76.9
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 6.0e-177 624.4 398 76.4
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 7.9e-177 624.0 387 79.1
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 1.0e-176 623.6 399 77.2
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 1.0e-176 623.6 396 77.8
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.8e-176 622.9 394 77.9
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.8e-176 622.9 364 81.9
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 3.0e-176 622.1 345 84.1
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 3.9e-176 621.7 410 76.3
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 5.1e-176 621.3 350 84.9
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 6.7e-176 620.9 400 77.0
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 8.7e-176 620.5 404 76.7
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 8.7e-176 620.5 425 72.9
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 1.5e-175 619.8 391 77.5
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 1.5e-175 619.8 398 76.9
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.5e-175 619.0 396 77.5
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 2.5e-175 619.0 365 81.9
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 3.3e-175 618.6 403 76.4
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 7.4e-175 617.5 409 76.8
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 7.4e-175 617.5 398 76.1
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 7.4e-175 617.5 397 77.6
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 7.4e-175 617.5 396 77.5
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 9.6e-175 617.1 397 77.6
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.6e-174 616.3 397 77.3
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 2.1e-174 615.9 402 76.6
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 2.8e-174 615.5 344 84.9
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 2.8e-174 615.5 342 84.5
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 4.8e-174 614.8 371 79.5
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 1.4e-173 613.2 400 76.2
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.4e-173 613.2 386 78.5
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.4e-173 613.2 412 76.0
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.8e-173 612.8 404 74.8
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 2.4e-173 612.5 343 84.3
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 2.4e-173 612.5 400 75.2
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 3.1e-173 612.1 343 84.8
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 4.0e-173 611.7 399 75.7
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 4.0e-173 611.7 404 75.2
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.3e-173 611.3 404 74.0
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 6.9e-173 610.9 345 83.5
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 9.0e-173 610.5 379 79.4
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 9.0e-173 610.5 380 78.9
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 1.2e-172 610.1 364 81.9
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 1.2e-172 610.1 364 81.9
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.5e-172 609.8 359 81.6
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 2.0e-172 609.4 362 82.0
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 2.0e-172 609.4 384 78.4
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 3.4e-172 608.6 361 82.0
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 5.8e-172 607.8 384 78.1
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 5.8e-172 607.8 342 84.5
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.7e-171 606.3 394 76.4
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 1.7e-171 606.3 395 76.2
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 2.2e-171 605.9 350 80.0
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 3.8e-171 605.1 351 82.6
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 6.4e-171 604.4 348 83.0
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 8.4e-171 604.0 395 75.9
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.1e-170 603.6 365 80.5
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.1e-170 603.6 365 80.5
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 2.5e-170 602.4 365 80.3
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 7.1e-170 600.9 402 73.9
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 1.2e-169 600.1 359 78.6
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 2.7e-169 599.0 308 90.3
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 1.0e-168 597.0 345 82.6
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.3e-168 596.7 463 67.4
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 8.7e-168 594.0 351 81.2
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.9e-167 592.8 382 77.5
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 4.3e-167 591.7 347 82.4
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 1.5e-164 583.2 399 73.9
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.5e-163 577.8 306 87.9
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 8.4e-163 577.4 390 73.8
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.2e-162 575.5 320 85.9
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.6e-161 573.2 314 85.7
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 2.7e-161 572.4 381 75.9
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 2.3e-160 569.3 379 75.5
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.5e-156 556.6 406 70.9
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 1.5e-156 556.6 554 54.3
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.5e-156 556.6 340 78.2
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 5.9e-156 554.7 371 75.2
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 7.7e-156 554.3 360 75.8
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.0e-155 553.9 372 75.0
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 1.0e-155 553.9 502 58.6
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 8.5e-155 550.8 502 58.8
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.1e-154 550.4 392 70.4
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.3e-152 542.7 350 72.6
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 2.0e-151 539.7 363 74.1
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.3e-151 538.9 341 73.6
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.7e-150 536.6 341 73.3
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.9e-146 523.1 340 72.6
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 3.6e-145 518.8 306 77.5
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 5.9e-132 474.9 247 87.0
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 3.8e-131 472.2 341 67.4
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 6.8e-128 461.5 282 77.7
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.6e-124 450.3 341 68.0
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 2.7e-124 449.5 312 67.0
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.2e-121 440.7 341 62.5
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.2e-112 408.7 265 74.7
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 2.8e-110 402.9 250 79.2
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 9.5e-106 387.9 350 56.0
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 3.7e-102 375.9 212 82.1
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 2.4e-101 373.2 356 54.5
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 3.0e-99 366.3 222 78.4
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.2e-93 346.3 237 71.3
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 3.1e-88 329.7 291 53.6
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.9e-87 324.7 209 74.2
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 3.8e-78 296.2 218 69.3
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 1.3e-67 261.2 127 94.5
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 2.5e-66 256.9 347 40.3
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 3.3e-66 256.5 392 38.0
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.3e-65 254.6 337 40.7
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.6e-65 253.1 324 41.7
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 3.6e-65 253.1 329 41.3
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 2.5e-58 230.3 318 39.9
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 8.1e-57 225.3 343 40.2
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.6e-55 220.3 183 62.8
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 9.3e-53 211.8 247 43.3
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 5.8e-47 192.6 119 79.8
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 1.3e-43 181.4 159 59.7
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 2.7e-28 130.6 96 68.8
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 6.3e-25 119.4 55 92.7
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 1.5e-21 108.2 156 42.3
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 5.7e-18 96.3 66 72.7
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 8.2e-17 92.4 96 57.3
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 9.1e-16 89.0 83 59.0
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 2.9e-14 84.0 49 77.6
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 2.5e-13 80.9 164 38.4
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 1.0e-11 75.5 35 82.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 6.3e-09 66.2 34 73.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 2.9e-06 57.4 31 77.4
HanXRQChr08g0215991 Helianthus annuus HOM05D033391 ORTHO05D220840 3.8e-06 57.0 27 88.9
HanXRQChr11g0343191 Helianthus annuus HOM05D033391 ORTHO05D220967 6.5e-06 56.2 25 96.0


User provided reference genes

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