Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 1.0e-117 426.8 215 100.0
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 1.4e-74 283.5 219 68.0
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 1.8e-58 229.9 218 60.6
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 9.5e-52 207.6 219 56.2
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 3.6e-27 125.9 229 37.1
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 3.6e-27 125.9 229 37.1
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 4.7e-27 125.6 211 40.3
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 1.1e-26 124.4 142 43.0
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.8e-26 123.6 231 37.7
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 3.1e-26 122.9 223 40.8
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 5.2e-26 122.1 205 39.5
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 8.9e-26 121.3 228 39.0
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 3.4e-25 119.4 230 37.8
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 7.6e-25 118.2 214 37.4
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 9.9e-25 117.9 244 36.1
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 3.8e-24 115.9 138 46.4
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 4.9e-24 115.5 208 39.4
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 6.4e-24 115.2 211 35.5
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 6.4e-24 115.2 214 36.0
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 8.4e-24 114.8 232 34.5
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 1.9e-23 113.6 229 36.2
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 5.4e-23 112.1 190 38.4
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 1.6e-22 110.5 201 37.8
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 2.7e-22 109.8 230 37.4
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 2.7e-22 109.8 219 37.4
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 3.5e-22 109.4 142 40.8
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 6.0e-22 108.6 141 43.3
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 7.8e-22 108.2 224 34.8
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 7.8e-22 108.2 224 34.8
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 1.0e-21 107.8 140 44.3
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 2.3e-21 106.7 130 46.9
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 5.1e-21 105.5 176 39.8
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.1e-21 105.5 200 37.5
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 6.6e-21 105.1 214 37.9
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 6.6e-21 105.1 142 43.0
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.1e-20 104.4 229 32.3
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 1.5e-20 104.0 135 42.2
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 1.5e-20 104.0 212 38.2
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 1.5e-20 104.0 199 36.2
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.5e-20 104.0 188 37.8
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.9e-20 103.6 201 37.8
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.5e-20 103.2 212 37.3
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.5e-20 103.2 211 36.0
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 3.3e-20 102.8 211 36.0
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 4.3e-20 102.4 224 34.8
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 7.3e-20 101.7 220 32.7
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 9.6e-20 101.3 152 36.8
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 9.6e-20 101.3 214 34.6
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.3e-19 100.9 197 36.5
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 1.6e-19 100.5 142 40.1
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 1.6e-19 100.5 143 37.8
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 1.6e-19 100.5 179 34.6
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 1.6e-19 100.5 143 37.8
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 1.6e-19 100.5 143 37.8
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 2.1e-19 100.1 194 35.1
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 2.8e-19 99.8 142 40.1
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.6e-19 99.4 224 34.4
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 4.8e-19 99.0 206 35.0
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 4.8e-19 99.0 139 43.9
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 8.1e-19 98.2 180 31.7
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 1.1e-18 97.8 168 33.3
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 1.4e-18 97.4 241 34.0
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 1.8e-18 97.1 209 37.3
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 2.4e-18 96.7 234 32.1
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 2.4e-18 96.7 173 36.4
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 2.4e-18 96.7 145 38.6
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 2.4e-18 96.7 143 37.8
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 2.4e-18 96.7 196 37.2
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 3.1e-18 96.3 172 34.3
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 3.1e-18 96.3 227 34.4
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 5.3e-18 95.5 202 34.2
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 5.3e-18 95.5 172 34.9
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 5.3e-18 95.5 201 32.3
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 6.9e-18 95.1 248 31.9
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 6.9e-18 95.1 183 31.1
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 6.9e-18 95.1 140 37.9
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 6.9e-18 95.1 144 37.5
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 9.0e-18 94.7 180 31.1
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 1.5e-17 94.0 220 31.4
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.5e-17 94.0 131 38.9
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 2.0e-17 93.6 142 38.7
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 2.6e-17 93.2 211 32.2
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 3.4e-17 92.8 142 36.6
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 4.5e-17 92.4 310 28.7
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 7.6e-17 91.7 120 46.7
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 7.6e-17 91.7 209 34.9
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 7.6e-17 91.7 200 38.0
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.7e-16 90.5 218 33.9
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 2.2e-16 90.1 204 31.4
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 8.4e-16 88.2 142 35.2
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 8.4e-16 88.2 142 38.7
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 1.1e-15 87.8 226 32.7
Oeu002348.1 Olea europaea HOM05D004190 ORTHO05D004692 1.1e-15 87.8 114 39.5
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 1.9e-15 87.0 207 34.3
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 2.4e-15 86.7 234 31.6
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 1.6e-14 84.0 113 42.5
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 1.6e-14 84.0 113 42.5
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 2.1e-14 83.6 161 34.2
SGA_v2.0_scaffold295G47507 Striga asiatica HOM05D004190 ORTHO05D004692 2.1e-14 83.6 74 59.5
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 3.5e-14 82.8 142 38.0
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 3.5e-14 82.8 145 38.6
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 4.6e-14 82.4 211 31.3
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 7.9e-14 81.6 144 36.1
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.3e-13 80.9 198 30.3
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 1.3e-13 80.9 217 30.9
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 2.3e-13 80.1 141 33.3
AUR62009570 Chenopodium quinoa HOM05D004190 ORTHO05D004692 3.0e-13 79.7 204 31.4
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 3.0e-13 79.7 303 30.0
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 3.0e-13 79.7 121 45.5
QL01p031797 Quercus lobata HOM05D004190 ORTHO05D004692 1.1e-12 77.8 113 43.4
CARHR155230 Cardamine hirsuta HOM05D004190 ORTHO05D004692 1.5e-12 77.4 194 30.9
CAN.G1733.1 Capsicum annuum HOM05D004190 ORTHO05D004692 3.3e-12 76.3 173 32.9
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 3.3e-12 76.3 157 34.4
SGA_v2.0_scaffold177G39450 Striga asiatica HOM05D004190 ORTHO05D004692 3.3e-12 76.3 204 35.3
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 5.6e-12 75.5 88 44.3
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 7.4e-12 75.1 176 32.4
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 1.6e-11 73.9 252 27.0
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 3.6e-11 72.8 111 37.8
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 6.2e-11 72.0 177 29.9
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 6.2e-11 72.0 177 29.9
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 6.2e-11 72.0 177 29.9
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 8.1e-11 71.6 148 32.4
PGSC0003DMG400044882 Solanum tuberosum HOM05D004190 ORTHO05D004692 5.3e-10 68.9 68 45.6
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 1.2e-09 67.8 137 30.7
CAN.G745.27 Capsicum annuum HOM05D004190 ORTHO05D004692 1.5e-09 67.4 114 36.0
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 2.0e-09 67.0 165 36.4
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 2.0e-09 67.0 100 43.0
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 7.6e-09 65.1 177 27.7
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 9.9e-09 64.7 124 37.9
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 1.3e-08 64.3 215 31.6
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 8.4e-08 61.6 55 54.5
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.9e-07 60.5 140 35.7
Haze_12048 Corylus avellana HOM05D004190 ORTHO05D004692 4.2e-07 59.3 110 35.5
PSO339G5001 Papaver somniferum HOM05D066734 ORTHO05D004692 9.3e-07 58.2 75 41.3
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 2.7e-06 56.6 135 30.4
PSO384G2347 Papaver somniferum HOM05D066734 ORTHO05D004692 3.5e-06 56.2 75 40.0
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 3.5e-06 56.2 190 29.5
PGSC0003DMG400042312 Solanum tuberosum HOM05D004190 ORTHO05D018124 3.5e-06 56.2 87 39.1
PGSC0003DMG400026343 Solanum tuberosum HOM05D004190 ORTHO05D004692 4.6e-06 55.8 98 33.7
TWI09G1536 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 4.6e-06 55.8 47 46.8


User provided reference genes

Program Settings