Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0073721 Helianthus annuus HOM05D001283 ORTHO05D001109 1.7e-47 192.2 89 100.0
HanXRQChr05g0142941 Helianthus annuus HOM05D004636 ORTHO05D005584 5.5e-38 160.6 96 80.2
HanXRQChr10g0301511 Helianthus annuus HOM05D004636 ORTHO05D005584 6.7e-36 153.7 106 73.6
HanXRQChr01g0021651 Helianthus annuus HOM05D001283 ORTHO05D001109 1.7e-15 85.9 54 75.9
Medtr3g083550 Medicago truncatula HOM05D001283 ORTHO05D001109 2.0e-08 62.4 27 88.9
HanXRQChr14g0437721 Helianthus annuus HOM05D001283 ORTHO05D001109 2.7e-08 62.0 28 89.3
ECA238G1495 Erigeron canadensis HOM05D001283 ORTHO05D001109 3.5e-08 61.6 27 92.6
ECA248G3711 Erigeron canadensis HOM05D001283 ORTHO05D001109 3.5e-08 61.6 27 92.6
Lsat_1_v5_gn_2_53461 Lactuca sativa HOM05D001283 ORTHO05D001109 3.5e-08 61.6 27 92.6
DCAR_019868 Daucus carota HOM05D000525 ORTHO05D007127 4.5e-08 61.2 27 88.9
HanXRQChr11g0344731 Helianthus annuus HOM05D001283 ORTHO05D001109 5.9e-08 60.8 26 96.2
Lsat_1_v5_gn_6_54241 Lactuca sativa HOM05D001283 ORTHO05D001109 5.9e-08 60.8 26 96.2
Lj1C542G3 Lonicera japonica HOM05D001283 ORTHO05D001109 5.9e-08 60.8 26 96.2
Nitab4.5_0001059g0180 Nicotiana tabacum HOM05D001283 ORTHO05D001109 5.9e-08 60.8 27 88.9
PSO384G1488 Papaver somniferum HOM05D001283 ORTHO05D001109 5.9e-08 60.8 26 96.2
Nn7g37184 Nelumbo nucifera HOM05D007667 ORTHO05D001109 7.8e-08 60.5 27 88.9
TWI60G1426 Tripterygium wilfordii HOM05D001283 ORTHO05D001109 7.8e-08 60.5 27 88.9
TAR633G1703 Trochodendron aralioides HOM05D001283 ORTHO05D001109 7.8e-08 60.5 27 88.9
HPP92_015936 Vanilla planifolia HOM05D001283 ORTHO05D001109 7.8e-08 60.5 27 88.9
VMungo1383G1868 Vigna mungo HOM05D001283 ORTHO05D001109 7.8e-08 60.5 27 88.9
ATR0737G103 Amborella trichopoda HOM05D001283 ORTHO05D001109 1.0e-07 60.1 27 85.2
Hma1.2p1_0241F.1_g100610 Hydrangea macrophylla HOM05D001283 ORTHO05D001109 1.0e-07 60.1 27 85.2
Sabra16G0064400 Salix brachista HOM05D001283 ORTHO05D001109 1.0e-07 60.1 27 85.2
HPP92_017553 Vanilla planifolia HOM05D001283 ORTHO05D001109 1.0e-07 60.1 27 85.2
MSTRG.20944 Avicennia marina HOM05D001283 ORTHO05D001109 1.3e-07 59.7 27 85.2
EL10Ac4g10368 Beta vulgaris HOM05D001283 ORTHO05D001109 1.3e-07 59.7 26 92.3
AUR62000010 Chenopodium quinoa HOM05D000020 ORTHO05D000904 1.3e-07 59.7 26 92.3
AUR62019180 Chenopodium quinoa HOM05D001283 ORTHO05D001109 1.3e-07 59.7 26 92.3
Cc01_g02150 Coffea canephora HOM05D001283 ORTHO05D001109 1.3e-07 59.7 27 85.2
Dinv13450 Davidia involucrata HOM05D001283 ORTHO05D001109 1.3e-07 59.7 26 92.3
Migut.D02546 Erythranthe guttata HOM05D001283 ORTHO05D001109 1.3e-07 59.7 26 92.3
Oeu058888.2 Olea europaea HOM05D001283 ORTHO05D001109 1.3e-07 59.7 26 92.3
Hund07582 Selenicereus undatus HOM05D001283 ORTHO05D001109 1.3e-07 59.7 26 92.3
Ca_16379_v3 Cicer arietinum L. HOM05D001283 ORTHO05D001109 1.7e-07 59.3 27 85.2
Haze_20071 Corylus avellana HOM05D001283 ORTHO05D001109 1.7e-07 59.3 26 88.5
FAN21G0550 Fragaria x ananassa HOM05D000020 ORTHO05D000904 1.7e-07 59.3 27 85.2
Glyma.02G220800 Glycine max HOM05D001283 ORTHO05D001109 1.7e-07 59.3 27 85.2
Glyma.14G188200 Glycine max HOM05D001283 ORTHO05D001109 1.7e-07 59.3 27 85.2
Lj6g0024150 Lotus japonicus HOM05D001283 ORTHO05D001109 1.7e-07 59.3 27 85.2
Nitab4.5_0001730g0110 Nicotiana tabacum HOM05D001283 ORTHO05D001109 1.7e-07 59.3 27 85.2
Phvul.001G268900 Phaseolus vulgaris HOM05D001283 ORTHO05D001109 1.7e-07 59.3 27 85.2
Psat5g100960 Pisum sativum HOM05D001283 ORTHO05D001109 1.7e-07 59.3 27 85.2
RcHm_v2.0_Chr5g0083131 Rosa chinensis HOM05D001283 ORTHO05D001109 1.7e-07 59.3 27 85.2
TPR.G403 Trifolium pratense HOM05D001283 ORTHO05D001109 1.7e-07 59.3 27 85.2
HanXRQChr13g0405311 Helianthus annuus HOM05D001283 ORTHO05D001109 2.3e-07 58.9 26 92.3
Nn2g12627 Nelumbo nucifera HOM05D001283 ORTHO05D001109 2.3e-07 58.9 27 81.5
PSO339G0614 Papaver somniferum HOM05D001283 ORTHO05D001109 2.3e-07 58.9 26 92.3
CBR_g49492 Chara braunii HOM05D001283 ORTHO05D001109 2.9e-07 58.5 46 50.0
HanXRQChr13g0397791 Helianthus annuus HOM05D001283 ORTHO05D001109 2.9e-07 58.5 50 54.0
Dinv24032 Davidia involucrata HOM05D001283 ORTHO05D001109 3.9e-07 58.2 26 92.3
Solyc01g005820.4 Solanum lycopersicum HOM05D001283 ORTHO05D001109 3.9e-07 58.2 27 81.5
Sopen01g001820 Solanum pennellii HOM05D001283 ORTHO05D001109 3.9e-07 58.2 27 81.5
PGSC0003DMG400032132 Solanum tuberosum HOM05D001283 ORTHO05D001109 3.9e-07 58.2 27 81.5
Manes.09G040200 Manihot esculenta HOM05D001283 ORTHO05D001109 5.0e-07 57.8 27 85.2
Oeu024296.1 Olea europaea HOM05D001283 ORTHO05D001109 5.0e-07 57.8 27 81.5
Prupe.7G085400 Prunus persica HOM05D001283 ORTHO05D001109 5.0e-07 57.8 27 85.2
PGR004G0332 Punica granatum HOM05D001283 ORTHO05D001109 5.0e-07 57.8 27 85.2
Hund24826 Selenicereus undatus HOM05D001283 ORTHO05D001109 5.0e-07 57.8 27 85.2
Sc09g0000140 Simmondsia chinensis HOM05D001283 ORTHO05D001109 5.0e-07 57.8 26 88.5
Sc13g0002520 Simmondsia chinensis HOM05D001283 ORTHO05D001109 5.0e-07 57.8 27 85.2
GSVIVG01025432001 Vitis vinifera HOM05D001283 ORTHO05D001109 5.0e-07 57.8 26 88.5
arahy.Tifrunner.gnm1.ann1.60QTDI Arachis hypogaea HOM05D001283 ORTHO05D001109 6.6e-07 57.4 27 81.5
arahy.Tifrunner.gnm1.ann1.AVS37Q Arachis hypogaea HOM05D001283 ORTHO05D001109 6.6e-07 57.4 27 81.5
Hma1.2p1_0116F.1_g056240 Hydrangea macrophylla HOM05D001283 ORTHO05D001109 6.6e-07 57.4 27 81.5
Os07g0633200 Oryza sativa ssp. japonica HOM05D001283 ORTHO05D001109 6.6e-07 57.4 27 85.2
Potri.016G062500 Populus trichocarpa HOM05D001283 ORTHO05D001109 6.6e-07 57.4 27 81.5
PGR119G0664 Punica granatum HOM05D001283 ORTHO05D001109 6.6e-07 57.4 27 85.2
CiPaw.14G135100 Carya illinoinensis HOM05D001283 ORTHO05D001109 8.6e-07 57.0 27 85.2
Migut.N00566 Erythranthe guttata HOM05D001283 ORTHO05D001109 8.6e-07 57.0 26 80.8
Lsat_1_v5_gn_1_58760 Lactuca sativa HOM05D001283 ORTHO05D001109 8.6e-07 57.0 27 81.5
Lalb_Chr08g0230311 Lupinus albus HOM05D001283 ORTHO05D001109 8.6e-07 57.0 27 81.5
Peaxi162Scf00463g00214 Petunia axillaris HOM05D001283 ORTHO05D001109 8.6e-07 57.0 27 81.5
RcHm_v2.0_Chr3g0478671 Rosa chinensis HOM05D001283 ORTHO05D001109 8.6e-07 57.0 26 88.5
THA.LOC104799276 Tarenaya hassleriana HOM05D001283 ORTHO05D001109 8.6e-07 57.0 27 85.2
FvH4_6g21490 Fragaria vesca HOM05D001283 ORTHO05D001109 1.1e-06 56.6 26 88.5
FAN02G3873 Fragaria x ananassa HOM05D001283 ORTHO05D001109 1.1e-06 56.6 26 88.5
FAN05G0318 Fragaria x ananassa HOM05D001283 ORTHO05D001109 1.1e-06 56.6 26 88.5
FAN05G1894 Fragaria x ananassa HOM05D001283 ORTHO05D001109 1.1e-06 56.6 26 88.5
FAN14G0675 Fragaria x ananassa HOM05D001283 ORTHO05D001109 1.1e-06 56.6 26 88.5
MD14G1050400 Malus domestica HOM05D001283 ORTHO05D001109 1.1e-06 56.6 26 84.6
Sabra06G0151500 Salix brachista HOM05D001283 ORTHO05D001109 1.1e-06 56.6 27 85.2
THA.LOC104822676 Tarenaya hassleriana HOM05D001283 ORTHO05D001109 1.1e-06 56.6 27 81.5
arahy.Tifrunner.gnm1.ann1.F6WF27 Arachis hypogaea HOM05D001283 ORTHO05D001109 1.5e-06 56.2 27 81.5
arahy.Tifrunner.gnm1.ann1.HMW6IE Arachis hypogaea HOM05D001283 ORTHO05D001109 1.5e-06 56.2 27 81.5
COL.COLO4_35028 Corchorus olitorius HOM05D000020 ORTHO05D000904 1.5e-06 56.2 27 81.5
Duzib150G0274 Durio zibethinus HOM05D001283 ORTHO05D001109 1.5e-06 56.2 27 81.5
FvH4_3g45331 Fragaria vesca HOM05D001283 ORTHO05D001109 1.5e-06 56.2 27 81.5
FAN11G1880 Fragaria x ananassa HOM05D000020 ORTHO05D000904 1.5e-06 56.2 27 81.5
FAN16G1754 Fragaria x ananassa HOM05D000020 ORTHO05D000904 1.5e-06 56.2 27 81.5
FAN25G2643 Fragaria x ananassa HOM05D000020 ORTHO05D000904 1.5e-06 56.2 27 81.5
Gohir.A06G103300 Gossypium hirsutum HOM05D001283 ORTHO05D001109 1.5e-06 56.2 27 81.5
Gohir.D06G111000 Gossypium hirsutum HOM05D001283 ORTHO05D001109 1.5e-06 56.2 27 81.5
Gorai.010G126300 Gossypium raimondii HOM05D001283 ORTHO05D001109 1.5e-06 56.2 27 81.5
Nitab4.5_0000658g0110 Nicotiana tabacum HOM05D001283 ORTHO05D001109 1.5e-06 56.2 26 84.6
QL01p008467 Quercus lobata HOM05D001283 ORTHO05D001109 1.5e-06 56.2 27 81.5
Thecc.09G208600 Theobroma cacao HOM05D001283 ORTHO05D001109 1.5e-06 56.2 27 81.5
CiPaw.13G175500 Carya illinoinensis HOM05D001283 ORTHO05D001109 1.9e-06 55.8 27 81.5
ECA233G5876 Erigeron canadensis HOM05D001283 ORTHO05D001109 1.9e-06 55.8 26 84.6
Lj1A1135T85 Lonicera japonica HOM05D001283 ORTHO05D001109 1.9e-06 55.8 26 84.6
MD03G1005800 Malus domestica HOM05D001283 ORTHO05D001109 1.9e-06 55.8 27 81.5
ClCG03G012340 Citrullus lanatus HOM05D001283 ORTHO05D001109 2.5e-06 55.5 27 77.8
CsaV3_1G043660 Cucumis sativus L. HOM05D001283 ORTHO05D001109 2.5e-06 55.5 27 77.8
Glyma.09G104200 Glycine max HOM05D001283 ORTHO05D001109 2.5e-06 55.5 27 77.8
Rhsim04G0093600 Rhododendron simsii HOM05D001283 ORTHO05D001109 2.5e-06 55.5 27 77.8
THA.LOC104815664 Tarenaya hassleriana HOM05D001283 ORTHO05D001109 2.5e-06 55.5 27 85.2
MELO3C009595.2 Cucumis melo HOM05D001283 ORTHO05D001109 3.3e-06 55.1 27 85.2
CsaV3_3G038510 Cucumis sativus L. HOM05D001283 ORTHO05D001109 3.3e-06 55.1 27 85.2
CsaV3_7G005550 Cucumis sativus L. HOM05D001283 ORTHO05D001109 3.3e-06 55.1 27 85.2
Lalb_Chr02g0153881 Lupinus albus HOM05D001283 ORTHO05D001109 3.3e-06 55.1 25 84.0
MD11G1008700 Malus domestica HOM05D001283 ORTHO05D001109 3.3e-06 55.1 26 84.6
Zm00001eb328450 Zea mays HOM05D001283 ORTHO05D001109 3.3e-06 55.1 26 84.6
Atru.chr3.2360 Acer truncatum HOM05D001283 ORTHO05D001109 4.3e-06 54.7 27 81.5
CSS0026311 Camellia sinensis var. sinensis HOM05D001283 ORTHO05D001109 4.3e-06 54.7 26 84.6
MELO3C015085.2 Cucumis melo HOM05D001283 ORTHO05D001109 4.3e-06 54.7 26 80.8
Migut.J01877 Erythranthe guttata HOM05D001283 ORTHO05D001109 4.3e-06 54.7 26 80.8
Eucgr.J01817 Eucalyptus grandis HOM05D001283 ORTHO05D001109 4.3e-06 54.7 26 84.6
Prupe.6G005600 Prunus persica HOM05D001283 ORTHO05D001109 4.3e-06 54.7 27 74.1
QL07p025482 Quercus lobata HOM05D001283 ORTHO05D001109 4.3e-06 54.7 27 81.5
vmacro12606 Vaccinium macrocarpon HOM05D001283 ORTHO05D001109 4.3e-06 54.7 26 84.6
Atru.chr8.1219 Acer truncatum HOM05D001283 ORTHO05D001109 5.6e-06 54.3 28 75.0
EL10Ac3g06849 Beta vulgaris HOM05D001283 ORTHO05D001109 5.6e-06 54.3 26 80.8
Cpa.g.sc119.64 Carica papaya HOM05D001283 ORTHO05D001109 5.6e-06 54.3 27 81.5
Ciclev10012758m.g Citrus clementina HOM05D001283 ORTHO05D001109 5.6e-06 54.3 27 81.5
Duzib093G1381 Durio zibethinus HOM05D001283 ORTHO05D001109 5.6e-06 54.3 27 81.5
ECA248G1698 Erigeron canadensis HOM05D001283 ORTHO05D001109 5.6e-06 54.3 26 80.8
Eucgr.A02501 Eucalyptus grandis HOM05D001283 ORTHO05D001109 5.6e-06 54.3 25 88.0
Eucgr.A02506 Eucalyptus grandis HOM05D001283 ORTHO05D001109 5.6e-06 54.3 25 88.0
Manes.15G107000 Manihot esculenta HOM05D001283 ORTHO05D001109 5.6e-06 54.3 27 81.5
Medtr1g054675 Medicago truncatula HOM05D001283 ORTHO05D001109 5.6e-06 54.3 27 74.1
Nitab4.5_0002532g0050 Nicotiana tabacum HOM05D001283 ORTHO05D001109 5.6e-06 54.3 26 80.8
Os03g0374575 Oryza sativa ssp. japonica HOM05D001283 ORTHO05D001109 5.6e-06 54.3 27 77.8
Potri.001G006400 Populus trichocarpa HOM05D001283 ORTHO05D001109 5.6e-06 54.3 27 81.5
Potri.003G218600 Populus trichocarpa HOM05D001283 ORTHO05D001109 5.6e-06 54.3 27 81.5
Thecc.05G180100 Theobroma cacao HOM05D001283 ORTHO05D001109 5.6e-06 54.3 27 81.5
Aqoxy1G00438 Aquilegia oxysepala HOM05D001283 ORTHO05D001109 7.3e-06 53.9 27 81.5
Ciclev10016371m.g Citrus clementina HOM05D001283 ORTHO05D001109 7.3e-06 53.9 27 77.8
Thhalv10021351m.g Eutrema salsugineum HOM05D001283 ORTHO05D001109 7.3e-06 53.9 25 88.0
Gohir.A04G054300 Gossypium hirsutum HOM05D001283 ORTHO05D001109 7.3e-06 53.9 27 77.8
Gohir.D04G094100 Gossypium hirsutum HOM05D001283 ORTHO05D001109 7.3e-06 53.9 27 77.8
Gorai.009G393200 Gossypium raimondii HOM05D001283 ORTHO05D001109 7.3e-06 53.9 27 77.8
Lalb_Chr23g0278461 Lupinus albus HOM05D001283 ORTHO05D001109 7.3e-06 53.9 27 77.8
Peaxi162Scf00738g00220 Petunia axillaris HOM05D000764 ORTHO05D002006 7.3e-06 53.9 25 80.0
Sp3g11780 Schrenkiella parvula HOM05D001283 ORTHO05D001109 7.3e-06 53.9 25 88.0
TWI32G1002 Tripterygium wilfordii HOM05D001283 ORTHO05D001109 7.3e-06 53.9 26 80.8
CANSAT11G2380 Cannabis sativa HOM05D001283 ORTHO05D001109 9.5e-06 53.5 26 76.9
CANSAT64G1377 Cannabis sativa HOM05D001283 ORTHO05D001109 9.5e-06 53.5 27 77.8
Cc00_g26120 Coffea canephora HOM05D001283 ORTHO05D001109 9.5e-06 53.5 27 77.8
PGSC0003DMG400004273 Solanum tuberosum HOM05D001283 ORTHO05D001109 9.5e-06 53.5 47 51.1
SGA_v2.0_scaffold6G03419 Striga asiatica HOM05D001283 ORTHO05D001109 9.5e-06 53.5 27 74.1
TPR.G14494 Trifolium pratense HOM05D001283 ORTHO05D001109 9.5e-06 53.5 27 77.8
TWI53G1669 Tripterygium wilfordii HOM05D001283 ORTHO05D001109 9.5e-06 53.5 27 77.8
Zm00001eb267400 Zea mays HOM05D001283 ORTHO05D001109 9.5e-06 53.5 25 80.0
Zm00001eb394060 Zea mays HOM05D001283 ORTHO05D001109 9.5e-06 53.5 25 80.0


User provided reference genes

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