Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 0.0e+00 1186.8 610 100.0
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 0.0e+00 1083.6 615 89.6
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 1.4e-310 1068.9 620 88.1
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 8.6e-308 1059.7 611 87.4
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 1.9e-302 1042.0 560 90.0
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 1.9e-302 1042.0 615 85.5
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.9e-302 1042.0 610 84.6
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 2.4e-302 1041.6 605 85.5
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 4.1e-302 1040.8 615 83.7
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 1.2e-301 1039.3 605 85.5
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.6e-301 1038.9 615 83.7
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 2.1e-301 1038.5 614 84.5
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 3.5e-301 1037.7 557 90.5
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.6e-301 1037.3 624 84.5
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 4.6e-301 1037.3 557 90.1
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 6.0e-301 1036.9 616 84.1
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 1.3e-300 1035.8 614 84.5
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 1.7e-300 1035.4 614 84.5
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 6.6e-300 1033.5 561 89.5
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 8.6e-300 1033.1 557 90.3
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.3e-299 1030.8 557 89.4
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 2.1e-298 1028.5 556 89.4
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.8e-298 1028.1 557 89.4
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 8.1e-298 1026.5 601 84.4
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 5.2e-297 1023.8 568 87.9
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 2.6e-296 1021.5 557 89.0
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 7.5e-296 1020.0 581 87.1
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 2.4e-294 1015.0 615 82.6
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 1.2e-293 1012.7 608 81.9
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 2.1e-293 1011.9 560 88.0
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 1.0e-292 1009.6 608 82.6
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 1.3e-292 1009.2 609 82.3
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.7e-292 1008.8 615 81.8
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 2.3e-292 1008.4 620 81.1
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 3.9e-292 1007.7 553 89.0
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 3.9e-292 1007.7 610 81.5
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 5.1e-292 1007.3 608 81.7
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 6.6e-292 1006.9 594 83.3
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 8.6e-292 1006.5 559 86.6
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 8.6e-292 1006.5 610 81.1
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.9e-291 1005.4 608 81.6
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 613 82.1
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 594 86.4
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 4.3e-291 1004.2 608 80.9
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 5.6e-291 1003.8 608 81.7
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 5.6e-291 1003.8 608 82.7
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 1.2e-290 1002.7 621 80.5
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 1.2e-290 1002.7 557 87.3
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 608 81.6
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 608 81.6
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 608 82.1
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 609 81.6
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 561 86.3
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 613 82.1
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 2.8e-290 1001.5 620 80.6
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 3.6e-290 1001.1 607 82.2
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 3.6e-290 1001.1 579 85.3
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 8.1e-290 1000.0 559 86.2
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 2.4e-289 998.4 593 83.5
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 4.0e-289 997.7 620 80.3
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 5.2e-289 997.3 612 82.5
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 6.8e-289 996.9 614 81.3
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 1.2e-288 996.1 610 80.7
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 1.2e-288 996.1 608 81.4
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 1.2e-288 996.1 562 86.7
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 1.5e-288 995.7 611 81.3
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 2.6e-288 995.0 558 86.9
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 3.4e-288 994.6 612 80.7
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 3.4e-288 994.6 562 86.5
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 3.4e-288 994.6 619 80.0
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 4.4e-288 994.2 559 86.8
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 5.8e-288 993.8 562 86.3
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 7.6e-288 993.4 644 77.5
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 9.9e-288 993.0 573 84.1
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 9.9e-288 993.0 557 86.7
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 2.2e-287 991.9 558 85.7
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.2e-287 991.9 558 85.7
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 2.9e-287 991.5 594 82.3
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 3.8e-287 991.1 609 80.8
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 4.9e-287 990.7 559 85.0
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 4.9e-287 990.7 609 81.1
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 6.4e-287 990.3 612 80.7
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 8.4e-287 989.9 559 86.4
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 1.4e-286 989.2 557 86.2
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 1.4e-286 989.2 560 86.6
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 3.2e-286 988.0 560 86.4
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 3.2e-286 988.0 560 86.4
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 3.2e-286 988.0 560 86.4
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 3.2e-286 988.0 612 80.4
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 5.4e-286 987.3 610 80.5
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 7.1e-286 986.9 608 81.2
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 1.2e-285 986.1 559 86.2
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 2.1e-285 985.3 560 86.2
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 2.1e-285 985.3 560 86.2
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 2.1e-285 985.3 608 80.6
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 2.7e-285 984.9 610 79.7
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 1.3e-284 982.6 608 80.6
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 1.3e-284 982.6 608 80.6
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 3.0e-284 981.5 608 80.8
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 6.6e-284 980.3 609 80.5
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.1e-283 979.5 557 85.3
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 1.1e-283 979.5 574 83.6
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.5e-283 979.2 616 82.0
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 3.6e-282 974.5 557 85.1
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 4.7e-282 974.2 574 84.0
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 1.4e-281 972.6 627 77.8
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.8e-281 972.2 688 72.5
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 1.6e-277 959.1 526 87.3
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 2.5e-275 951.8 612 78.8
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 3.6e-274 948.0 557 82.9
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 5.3e-273 944.1 544 83.3
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.7e-271 939.1 556 81.5
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 2.9e-271 938.3 559 80.0
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 3.8e-271 937.9 619 78.0
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 5.6e-267 924.1 538 84.2
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.8e-265 919.1 576 80.4
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 2.2e-263 912.1 562 76.3
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.9e-263 911.8 559 80.0
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 8.7e-260 900.2 558 77.4
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 9.0e-257 890.2 526 82.7
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 3.2e-254 881.7 643 72.5
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 3.3e-243 845.1 623 69.8
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 7.4e-243 844.0 614 69.9
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 9.1e-241 837.0 557 72.4
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 5.7e-235 817.8 557 70.4
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 3.8e-231 805.1 489 82.4
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 3.6e-229 798.5 490 80.2
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 2.9e-223 778.9 467 80.9
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 6.1e-221 771.2 427 87.8
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 1.0e-220 770.4 432 87.0
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 6.8e-220 767.7 548 67.5
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 6.5e-215 751.1 425 85.2
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.5e-214 749.2 489 78.3
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 6.8e-212 741.1 432 82.9
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.9e-207 725.7 429 83.4
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.7e-202 709.9 561 62.2
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 5.0e-199 698.4 402 85.1
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 2.7e-176 622.9 432 73.6
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 4.6e-168 595.5 573 53.4
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 9.3e-161 571.2 312 89.1
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 3.3e-150 536.2 384 72.9
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 2.8e-133 479.9 339 74.6
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 1.5e-126 457.6 286 83.6
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 1.6e-104 384.4 277 68.6
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 5.7e-94 349.4 216 78.2
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 2.4e-76 290.8 209 78.0
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 7.0e-76 289.3 553 34.0
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.6e-75 288.1 152 90.1
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 5.8e-70 269.6 149 84.6
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 9.2e-60 235.7 130 84.6
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 6.6e-58 229.6 132 79.5
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 9.6e-57 225.7 126 84.9
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 1.5e-54 218.4 178 65.7
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 8.4e-53 212.6 116 92.2
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 3.5e-51 207.2 109 91.7
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.7e-50 204.9 114 86.0
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 3.9e-50 203.8 114 81.6
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 6.4e-45 186.4 114 74.6
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 8.4e-45 186.0 105 79.0
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 9.3e-44 182.6 125 69.6
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 3.0e-42 177.6 251 46.2
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 4.0e-39 167.2 95 80.0
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 3.4e-38 164.1 228 48.2
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.5e-33 147.9 153 56.9
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 1.6e-27 128.6 116 61.2
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 1.8e-26 125.2 61 96.7
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 1.6e-24 118.6 69 78.3
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 4.1e-23 114.0 212 36.8
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 5.9e-22 110.2 56 94.6
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 9.7e-17 92.8 183 32.8
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.6e-16 92.0 66 68.2
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 1.1e-12 79.3 67 55.2
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 7.9e-11 73.2 41 82.9


User provided reference genes

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