Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0052691 Helianthus annuus HOM05D000580 ORTHO05D006815 7.2e-37 156.8 80 100.0
HanXRQChr05g0139711 Helianthus annuus HOM05D000580 ORTHO05D006815 3.5e-36 154.5 80 98.8
HanXRQChr05g0152611 Helianthus annuus HOM05D000580 ORTHO05D006815 3.5e-36 154.5 80 98.8
HanXRQChr08g0223961 Helianthus annuus HOM05D000580 ORTHO05D006815 3.5e-36 154.5 80 98.8
HanXRQChr10g0283641 Helianthus annuus HOM05D000580 ORTHO05D006815 3.5e-36 154.5 80 98.8
HanXRQChr10g0284331 Helianthus annuus HOM05D000580 ORTHO05D006815 3.5e-36 154.5 80 98.8
HanXRQChr10g0318111 Helianthus annuus HOM05D000580 ORTHO05D006815 3.5e-36 154.5 80 98.8
HanXRQChr11g0341921 Helianthus annuus HOM05D000580 ORTHO05D006815 3.5e-36 154.5 80 98.8
HanXRQChr14g0459311 Helianthus annuus HOM05D000580 ORTHO05D006815 3.5e-36 154.5 80 98.8
HanXRQCPg0580131 Helianthus annuus HOM05D000580 ORTHO05D006815 3.5e-36 154.5 80 98.8
HanXRQChr02g0038651 Helianthus annuus HOM05D000580 ORTHO05D006815 1.8e-35 152.1 80 96.2
CAN.G219.32 Capsicum annuum HOM05D000580 ORTHO05D006815 2.5e-34 148.3 80 95.0
HanXRQChr04g0094321 Helianthus annuus HOM05D000580 ORTHO05D006815 2.8e-33 144.8 80 93.8
SGA_v2.0_scaffold479G52254 Striga asiatica HOM05D000580 ORTHO05D006815 2.8e-33 144.8 80 92.5
HanXRQChr11g0345231 Helianthus annuus HOM05D000580 ORTHO05D006815 8.2e-33 143.3 80 92.5
Hma1.2p1_0218F.1_g092720 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 2.6e-31 138.3 80 87.5
Hma1.2p1_2223F.1_g317406 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 2.6e-31 138.3 80 87.5
CAN.G1478.5 Capsicum annuum HOM05D000580 ORTHO05D006815 5.9e-31 137.1 91 82.4
CSS0026029 Camellia sinensis var. sinensis HOM05D000580 ORTHO05D006815 1.3e-30 136.0 74 91.9
CAN.G129.14 Capsicum annuum HOM05D000580 ORTHO05D006815 1.7e-30 135.6 80 86.2
CAN.G131.5 Capsicum annuum HOM05D000580 ORTHO05D006815 1.7e-30 135.6 74 93.2
CAN.G1513.10 Capsicum annuum HOM05D000580 ORTHO05D006815 3.8e-30 134.4 74 91.9
Lsat_1_v5_gn_5_67060 Lactuca sativa HOM05D000580 ORTHO05D006815 6.5e-30 133.7 74 93.2
CAN.G29.17 Capsicum annuum HOM05D000580 ORTHO05D006815 1.1e-29 132.9 80 86.2
CAN.G1595.6 Capsicum annuum HOM05D000580 ORTHO05D006815 1.4e-29 132.5 74 90.5
PGR111G0073 Punica granatum HOM05D000580 ORTHO05D006815 1.4e-29 132.5 74 91.9
BNapus_Darmor_BZH_scaffold_253p00300 Brassica napus HOM05D000580 ORTHO05D006815 1.9e-29 132.1 74 91.9
BNapus_Darmor_BZH_scaffold_57p00040 Brassica napus HOM05D000580 ORTHO05D006815 1.9e-29 132.1 74 91.9
C06p23100 Brassica napus HOM05D000580 ORTHO05D006815 1.9e-29 132.1 74 91.9
BolSC29t60604H Brassica oleracea HOM05D000580 ORTHO05D006815 1.9e-29 132.1 74 91.9
BolSC35t60664H Brassica oleracea HOM05D000580 ORTHO05D006815 1.9e-29 132.1 74 91.9
BolSC35t60735H Brassica oleracea HOM05D000580 ORTHO05D006815 1.9e-29 132.1 74 91.9
BolSC46t61015H Brassica oleracea HOM05D000580 ORTHO05D006815 1.9e-29 132.1 74 91.9
BolSC47t61080H Brassica oleracea HOM05D000580 ORTHO05D006815 1.9e-29 132.1 74 91.9
BolSC49t61168H Brassica oleracea HOM05D000580 ORTHO05D006815 1.9e-29 132.1 74 91.9
BraA06t25380Z Brassica rapa HOM05D000580 ORTHO05D006815 1.9e-29 132.1 74 91.9
BraSC138t45558Z Brassica rapa HOM05D000580 ORTHO05D006815 1.9e-29 132.1 74 91.9
BraSC58t46498Z Brassica rapa HOM05D000580 ORTHO05D006815 1.9e-29 132.1 74 91.9
BraSC59t46576Z Brassica rapa HOM05D000580 ORTHO05D006815 1.9e-29 132.1 74 91.9
Carub.0006s2561 Capsella rubella HOM05D000580 ORTHO05D006815 1.9e-29 132.1 74 91.9
Lalb_Chr10g0093221 Lupinus albus HOM05D000580 ORTHO05D006815 2.5e-29 131.7 74 89.2
Lalb_Chr25g0283341 Lupinus albus HOM05D000580 ORTHO05D006815 2.5e-29 131.7 74 89.2
Gohir.A03G093700 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.2e-29 131.0 74 89.2
AL2G20610 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 5.5e-29 130.6 74 90.5
AL2G21660 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 5.5e-29 130.6 74 90.5
ATCG00710 Arabidopsis thaliana HOM05D000580 ORTHO05D006815 5.5e-29 130.6 74 90.5
CARHR282200 Cardamine hirsuta HOM05D000580 ORTHO05D006815 5.5e-29 130.6 74 90.5
Gohir.1Z078601 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.5e-29 130.6 74 89.2
Gohir.A09G043800 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.5e-29 130.6 74 89.2
Gohir.D01G102060 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.5e-29 130.6 74 89.2
Gorai.010G031500 Gossypium raimondii HOM05D000580 ORTHO05D006815 5.5e-29 130.6 74 89.2
Potri.011G074901 Populus trichocarpa HOM05D000580 ORTHO05D006815 5.5e-29 130.6 74 90.5
Potri.011G113742 Populus trichocarpa HOM05D000580 ORTHO05D006815 5.5e-29 130.6 74 90.5
Potri.019G028200 Populus trichocarpa HOM05D000580 ORTHO05D006815 5.5e-29 130.6 74 90.5
PSO548G0006 Papaver somniferum HOM05D000580 ORTHO05D006815 1.2e-28 129.4 74 90.5
Nn049s41914 Nelumbo nucifera HOM05D000580 ORTHO05D006815 1.6e-28 129.0 74 87.8
Gohir.1Z049866 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.7e-28 128.3 74 87.8
Gohir.A12G178620 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.7e-28 128.3 74 87.8
Gohir.A12G178665 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.7e-28 128.3 74 87.8
Gohir.A09G103100 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.6e-28 127.5 74 87.8
C06p22890 Brassica napus HOM05D000580 ORTHO05D006815 6.1e-28 127.1 74 89.2
Eucgr.F03245 Eucalyptus grandis HOM05D000580 ORTHO05D006815 6.1e-28 127.1 74 89.2
Gohir.A12G178630 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.9e-28 126.7 74 86.5
Hund29679 Selenicereus undatus HOM05D000580 ORTHO05D006815 7.9e-28 126.7 75 86.7
LjContig00319g0006223 Lotus japonicus HOM05D000580 ORTHO05D006815 1.0e-27 126.3 74 83.8
LjContig00319g0024255 Lotus japonicus HOM05D000580 ORTHO05D006815 1.0e-27 126.3 74 83.8
DCAR_032514 Daucus carota HOM05D000580 ORTHO05D006815 1.4e-27 125.9 74 87.8
Gohir.A02G100500 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.4e-27 125.9 74 86.5
Gohir.A13G110000 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.4e-27 125.9 74 86.5
Migut.H01967 Erythranthe guttata HOM05D000580 ORTHO05D006815 1.8e-27 125.6 67 94.0
Gohir.A12G228900 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.8e-27 125.6 74 85.1
Sed0004233 Sechium edule HOM05D000580 ORTHO05D006815 1.8e-27 125.6 74 85.1
Sed0008111 Sechium edule HOM05D000580 ORTHO05D006815 1.8e-27 125.6 74 85.1
Sed0015899 Sechium edule HOM05D000580 ORTHO05D006815 1.8e-27 125.6 74 85.1
BolC2t08916H Brassica oleracea HOM05D000580 ORTHO05D006815 5.1e-27 124.0 70 90.0
CARHR292710 Cardamine hirsuta HOM05D000580 ORTHO05D006815 5.1e-27 124.0 74 86.5
CiPaw.10G124800 Carya illinoinensis HOM05D000580 ORTHO05D006815 5.1e-27 124.0 74 83.8
RcHm_v2.0_CPg0501961 Rosa chinensis HOM05D000580 ORTHO05D006815 6.7e-27 123.6 75 85.3
Nitab4.5_0001105g0140 Nicotiana tabacum HOM05D000580 ORTHO05D006815 8.8e-27 123.2 79 79.7
CAN.G648.1 Capsicum annuum HOM05D000580 ORTHO05D006815 1.5e-26 122.5 80 78.8
Gohir.A01G128325 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.5e-26 121.7 74 82.4
Gohir.A05G286600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.3e-26 121.3 74 85.1
Eucgr.B01572 Eucalyptus grandis HOM05D000580 ORTHO05D006815 4.3e-26 120.9 69 88.4
CAN.G2018.9 Capsicum annuum HOM05D000580 ORTHO05D006815 9.7e-26 119.8 74 85.1
Gohir.D04G149675 Gossypium hirsutum HOM05D000580 ORTHO05D006815 9.7e-26 119.8 71 84.5
RcHm_v2.0_Chr6g0260481 Rosa chinensis HOM05D000580 ORTHO05D006815 9.7e-26 119.8 75 82.7
Gohir.A05G326916 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.2e-25 118.6 74 83.8
Gorai.005G164900 Gossypium raimondii HOM05D000580 ORTHO05D006815 2.2e-25 118.6 74 82.4
HanXRQChr02g0052541 Helianthus annuus HOM05D000580 ORTHO05D001785 2.8e-25 118.2 57 100.0
RcHm_v2.0_Chr4g0390611 Rosa chinensis HOM05D000580 ORTHO05D006815 3.7e-25 117.9 75 82.7
Gohir.D02G147200 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.3e-25 117.1 74 81.1
Duzib026G0003 Durio zibethinus HOM05D000580 ORTHO05D001362 8.2e-25 116.7 67 85.1
Duzib124G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 8.2e-25 116.7 67 85.1
Duzib237G0002 Durio zibethinus HOM05D000580 ORTHO05D001362 8.2e-25 116.7 67 85.1
Duzib252G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 8.2e-25 116.7 67 85.1
Duzib256G0004 Durio zibethinus HOM05D000580 ORTHO05D001362 8.2e-25 116.7 67 85.1
Gorai.008G286600 Gossypium raimondii HOM05D000580 ORTHO05D006815 8.2e-25 116.7 74 81.1
Potri.002G174001 Populus trichocarpa HOM05D000580 ORTHO05D006815 8.2e-25 116.7 72 81.9
HanXRQChr07g0193501 Helianthus annuus HOM05D000580 ORTHO05D006815 1.1e-24 116.3 58 96.6
HanXRQChr01g0020261 Helianthus annuus HOM05D000580 ORTHO05D001785 1.4e-24 115.9 57 98.2
HanXRQChr10g0299321 Helianthus annuus HOM05D000580 ORTHO05D001785 1.4e-24 115.9 57 98.2
HanXRQChr11g0326921 Helianthus annuus HOM05D000580 ORTHO05D001785 1.4e-24 115.9 57 98.2
Gohir.D09G103600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.4e-24 115.2 74 79.7
Hma1.2p1_0149F.1_g066500 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 3.1e-24 114.8 74 77.0
Medtr2g062930 Medicago truncatula HOM05D000580 ORTHO05D006815 3.1e-24 114.8 66 83.3
Lalb_Chr23g0274371 Lupinus albus HOM05D000580 ORTHO05D006815 4.1e-24 114.4 80 75.0
Gohir.A05G301450 Gossypium hirsutum HOM05D000580 ORTHO05D006815 5.3e-24 114.0 74 81.1
Glyma.03G065000 Glycine max HOM05D000580 ORTHO05D006815 6.9e-24 113.6 74 79.7
Gohir.A09G103075 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.2e-23 112.8 69 84.1
Prupe.7G021700 Prunus persica HOM05D000580 ORTHO05D006815 2.0e-23 112.1 75 77.3
Gohir.D02G096801 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.4e-23 111.3 67 82.1
Gorai.005G110300 Gossypium raimondii HOM05D000580 ORTHO05D006815 4.5e-23 110.9 67 83.6
Sed0008946 Sechium edule HOM05D000580 ORTHO05D006815 2.2e-22 108.6 74 78.4
Hund08570 Selenicereus undatus HOM05D000580 ORTHO05D006815 2.2e-22 108.6 72 80.6
Nitab4.5_0010531g0030 Nicotiana tabacum HOM05D000580 ORTHO05D006815 5.0e-22 107.5 74 78.4
EL10Ac1g01194 Beta vulgaris HOM05D000580 ORTHO05D001362 3.2e-21 104.8 63 87.3
C07p15330 Brassica napus HOM05D000580 ORTHO05D006815 3.2e-21 104.8 62 80.6
Nitab4.5_0004376g0090 Nicotiana tabacum HOM05D000580 ORTHO05D006815 3.6e-20 101.3 57 87.7
Glyma.17G186400 Glycine max HOM05D000580 ORTHO05D006815 4.7e-20 100.9 58 84.5
Hund10713 Selenicereus undatus HOM05D000580 ORTHO05D001362 6.1e-20 100.5 77 71.4
Lsat_1_v5_gn_5_50340 Lactuca sativa HOM05D000580 ORTHO05D006815 7.9e-20 100.1 57 86.0
Gohir.A10G070250 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.3e-19 98.6 55 85.5
Psat6g181560 Pisum sativum HOM05D000580 ORTHO05D001785 3.0e-19 98.2 64 75.0
Peaxi162Scf00299g10016 Petunia axillaris HOM05D000580 ORTHO05D006815 3.9e-19 97.8 65 76.9
Solyc00g500026.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 1.1e-18 96.3 51 90.2
Solyc00g500072.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 1.1e-18 96.3 51 90.2
Medtr4g051375 Medicago truncatula HOM05D000580 ORTHO05D006815 5.7e-18 94.0 51 86.3
Psat0s7142g0160 Pisum sativum HOM05D000580 ORTHO05D001785 9.7e-18 93.2 61 75.4
MELO3C033895.2 Cucumis melo HOM05D000580 ORTHO05D006815 2.8e-17 91.7 74 67.6
Peaxi162Scf00527g00037 Petunia axillaris HOM05D000580 ORTHO05D006815 2.8e-17 91.7 51 86.3
SabraPtG0004100 Salix brachista HOM05D000580 ORTHO05D001785 4.8e-17 90.9 72 63.9
Psat7g045200 Pisum sativum HOM05D000580 ORTHO05D006815 6.3e-17 90.5 61 72.1
SabraMtG0010300 Salix brachista HOM05D000580 ORTHO05D006815 8.2e-17 90.1 50 86.0
Psat0s1446g0280 Pisum sativum HOM05D000580 ORTHO05D001785 2.4e-16 88.6 51 80.4
Ah.10g027190 Amaranthus hybridus HOM05D000580 ORTHO05D001785 4.1e-16 87.8 51 84.3
Ah.10g027480 Amaranthus hybridus HOM05D000580 ORTHO05D001785 4.1e-16 87.8 51 84.3
Ah.10g028960 Amaranthus hybridus HOM05D000580 ORTHO05D001785 1.2e-15 86.3 51 82.4
SMO086G0029 Selaginella moellendorffii HOM05D000580 ORTHO05D006815 1.3e-14 82.8 79 55.7
Ah.10g027360 Amaranthus hybridus HOM05D000580 ORTHO05D006815 2.2e-14 82.0 54 77.8
Sp5g12490 Schrenkiella parvula HOM05D000580 ORTHO05D006815 2.9e-14 81.6 45 84.4
Sc07g0006580 Simmondsia chinensis HOM05D000580 ORTHO05D006815 3.8e-14 81.3 53 73.6
Solyc11g006675.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 8.5e-14 80.1 41 87.8
Lalb_Chr01g0009811 Lupinus albus HOM05D000580 ORTHO05D006815 4.2e-13 77.8 41 90.2
Glyma.05G092100 Glycine max HOM05D000580 ORTHO05D006815 5.5e-13 77.4 42 83.3
LjContig00318g0018353 Lotus japonicus HOM05D000580 ORTHO05D001785 2.1e-12 75.5 43 79.1
BolSC29t60484H Brassica oleracea HOM05D000580 ORTHO05D006815 6.1e-12 73.9 40 85.0
MD04G1032200 Malus domestica HOM05D000580 ORTHO05D006815 6.1e-12 73.9 60 56.7
BolSC46t61022H Brassica oleracea HOM05D000580 ORTHO05D006815 8.8e-11 70.1 37 86.5
Migut.L00683 Erythranthe guttata HOM05D000580 ORTHO05D006815 5.7e-10 67.4 45 71.1
RcHm_v2.0_Chr2g0140191 Rosa chinensis HOM05D000580 ORTHO05D006815 9.7e-10 66.6 43 74.4
QL93p1043_0018 Quercus lobata HOM05D000580 ORTHO05D001785 1.7e-09 65.9 35 88.6
ClCG02G007580 Citrullus lanatus HOM05D000580 ORTHO05D006815 2.8e-09 65.1 36 83.3
Lalb_Chr23g0274191 Lupinus albus HOM05D000580 ORTHO05D006815 9.1e-08 60.1 39 74.4
Glyma.19G056032 Glycine max HOM05D000580 ORTHO05D006815 1.3e-06 56.2 32 90.6
Potri.011G074742 Populus trichocarpa HOM05D000580 ORTHO05D006815 1.7e-06 55.8 32 96.9
Migut.D01365 Erythranthe guttata HOM05D000580 ORTHO05D006815 3.8e-06 54.7 60 56.7
BraSC103t45479Z Brassica rapa HOM05D000580 ORTHO05D006815 8.5e-06 53.5 38 84.2


User provided reference genes

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