Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0038651 Helianthus annuus HOM05D000580 ORTHO05D006815 2.5e-37 158.3 80 100.0
HanXRQChr05g0139711 Helianthus annuus HOM05D000580 ORTHO05D006815 1.6e-36 155.6 80 97.5
HanXRQChr05g0152611 Helianthus annuus HOM05D000580 ORTHO05D006815 1.6e-36 155.6 80 97.5
HanXRQChr08g0223961 Helianthus annuus HOM05D000580 ORTHO05D006815 1.6e-36 155.6 80 97.5
HanXRQChr10g0283641 Helianthus annuus HOM05D000580 ORTHO05D006815 1.6e-36 155.6 80 97.5
HanXRQChr10g0284331 Helianthus annuus HOM05D000580 ORTHO05D006815 1.6e-36 155.6 80 97.5
HanXRQChr10g0318111 Helianthus annuus HOM05D000580 ORTHO05D006815 1.6e-36 155.6 80 97.5
HanXRQChr11g0341921 Helianthus annuus HOM05D000580 ORTHO05D006815 1.6e-36 155.6 80 97.5
HanXRQChr14g0459311 Helianthus annuus HOM05D000580 ORTHO05D006815 1.6e-36 155.6 80 97.5
HanXRQCPg0580131 Helianthus annuus HOM05D000580 ORTHO05D006815 1.6e-36 155.6 80 97.5
HanXRQChr02g0052691 Helianthus annuus HOM05D000580 ORTHO05D006815 7.9e-36 153.3 80 96.2
CAN.G219.32 Capsicum annuum HOM05D000580 ORTHO05D006815 1.1e-34 149.4 80 93.8
HanXRQChr04g0094321 Helianthus annuus HOM05D000580 ORTHO05D006815 1.3e-33 146.0 80 92.5
SGA_v2.0_scaffold479G52254 Striga asiatica HOM05D000580 ORTHO05D006815 1.3e-33 146.0 80 91.2
HanXRQChr11g0345231 Helianthus annuus HOM05D000580 ORTHO05D006815 3.7e-33 144.4 80 91.2
Hma1.2p1_0218F.1_g092720 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 1.2e-31 139.4 80 86.2
Hma1.2p1_2223F.1_g317406 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 1.2e-31 139.4 80 86.2
CAN.G1478.5 Capsicum annuum HOM05D000580 ORTHO05D006815 2.6e-31 138.3 91 81.3
CSS0026029 Camellia sinensis var. sinensis HOM05D000580 ORTHO05D006815 7.7e-31 136.7 74 90.5
CAN.G131.5 Capsicum annuum HOM05D000580 ORTHO05D006815 1.0e-30 136.3 74 91.9
Lsat_1_v5_gn_5_67060 Lactuca sativa HOM05D000580 ORTHO05D006815 1.7e-30 135.6 74 93.2
CAN.G129.14 Capsicum annuum HOM05D000580 ORTHO05D006815 2.2e-30 135.2 80 83.8
CAN.G1513.10 Capsicum annuum HOM05D000580 ORTHO05D006815 2.2e-30 135.2 74 90.5
CAN.G29.17 Capsicum annuum HOM05D000580 ORTHO05D006815 5.0e-30 134.0 80 85.0
CAN.G1595.6 Capsicum annuum HOM05D000580 ORTHO05D006815 8.5e-30 133.3 74 89.2
Potri.011G074901 Populus trichocarpa HOM05D000580 ORTHO05D006815 8.5e-30 133.3 74 90.5
Potri.011G113742 Populus trichocarpa HOM05D000580 ORTHO05D006815 8.5e-30 133.3 74 90.5
Potri.019G028200 Populus trichocarpa HOM05D000580 ORTHO05D006815 8.5e-30 133.3 74 90.5
PGR111G0073 Punica granatum HOM05D000580 ORTHO05D006815 8.5e-30 133.3 74 90.5
BNapus_Darmor_BZH_scaffold_253p00300 Brassica napus HOM05D000580 ORTHO05D006815 1.1e-29 132.9 74 90.5
BNapus_Darmor_BZH_scaffold_57p00040 Brassica napus HOM05D000580 ORTHO05D006815 1.1e-29 132.9 74 90.5
C06p23100 Brassica napus HOM05D000580 ORTHO05D006815 1.1e-29 132.9 74 90.5
BolSC29t60604H Brassica oleracea HOM05D000580 ORTHO05D006815 1.1e-29 132.9 74 90.5
BolSC35t60664H Brassica oleracea HOM05D000580 ORTHO05D006815 1.1e-29 132.9 74 90.5
BolSC35t60735H Brassica oleracea HOM05D000580 ORTHO05D006815 1.1e-29 132.9 74 90.5
BolSC46t61015H Brassica oleracea HOM05D000580 ORTHO05D006815 1.1e-29 132.9 74 90.5
BolSC47t61080H Brassica oleracea HOM05D000580 ORTHO05D006815 1.1e-29 132.9 74 90.5
BolSC49t61168H Brassica oleracea HOM05D000580 ORTHO05D006815 1.1e-29 132.9 74 90.5
BraA06t25380Z Brassica rapa HOM05D000580 ORTHO05D006815 1.1e-29 132.9 74 90.5
BraSC138t45558Z Brassica rapa HOM05D000580 ORTHO05D006815 1.1e-29 132.9 74 90.5
BraSC58t46498Z Brassica rapa HOM05D000580 ORTHO05D006815 1.1e-29 132.9 74 90.5
BraSC59t46576Z Brassica rapa HOM05D000580 ORTHO05D006815 1.1e-29 132.9 74 90.5
Carub.0006s2561 Capsella rubella HOM05D000580 ORTHO05D006815 1.1e-29 132.9 74 90.5
Lalb_Chr10g0093221 Lupinus albus HOM05D000580 ORTHO05D006815 1.4e-29 132.5 74 87.8
Lalb_Chr25g0283341 Lupinus albus HOM05D000580 ORTHO05D006815 1.4e-29 132.5 74 87.8
Gohir.A03G093700 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.5e-29 131.7 74 87.8
AL2G20610 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 3.2e-29 131.3 74 89.2
AL2G21660 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 3.2e-29 131.3 74 89.2
ATCG00710 Arabidopsis thaliana HOM05D000580 ORTHO05D006815 3.2e-29 131.3 74 89.2
CARHR282200 Cardamine hirsuta HOM05D000580 ORTHO05D006815 3.2e-29 131.3 74 89.2
Gohir.1Z078601 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.2e-29 131.3 74 87.8
Gohir.A09G043800 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.2e-29 131.3 74 87.8
Gohir.D01G102060 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.2e-29 131.3 74 87.8
Gorai.010G031500 Gossypium raimondii HOM05D000580 ORTHO05D006815 3.2e-29 131.3 74 87.8
Nn049s41914 Nelumbo nucifera HOM05D000580 ORTHO05D006815 5.5e-29 130.6 74 89.2
PSO548G0006 Papaver somniferum HOM05D000580 ORTHO05D006815 7.2e-29 130.2 74 89.2
Gohir.1Z049866 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.6e-28 129.0 74 86.5
Gohir.A12G178620 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.6e-28 129.0 74 86.5
Gohir.A12G178665 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.6e-28 129.0 74 86.5
Gohir.A09G103100 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.7e-28 128.3 74 86.5
C06p22890 Brassica napus HOM05D000580 ORTHO05D006815 3.6e-28 127.9 74 87.8
Eucgr.F03245 Eucalyptus grandis HOM05D000580 ORTHO05D006815 3.6e-28 127.9 74 87.8
Gohir.A12G178630 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.6e-28 127.5 74 85.1
Hund29679 Selenicereus undatus HOM05D000580 ORTHO05D006815 4.6e-28 127.5 75 85.3
LjContig00319g0006223 Lotus japonicus HOM05D000580 ORTHO05D006815 6.1e-28 127.1 74 82.4
LjContig00319g0024255 Lotus japonicus HOM05D000580 ORTHO05D006815 6.1e-28 127.1 74 82.4
DCAR_032514 Daucus carota HOM05D000580 ORTHO05D006815 7.9e-28 126.7 74 86.5
Gohir.A02G100500 Gossypium hirsutum HOM05D000580 ORTHO05D006815 7.9e-28 126.7 74 85.1
Migut.H01967 Erythranthe guttata HOM05D000580 ORTHO05D006815 1.0e-27 126.3 67 92.5
Gohir.A12G228900 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.0e-27 126.3 74 83.8
Sed0004233 Sechium edule HOM05D000580 ORTHO05D006815 1.0e-27 126.3 74 83.8
Sed0008111 Sechium edule HOM05D000580 ORTHO05D006815 1.0e-27 126.3 74 83.8
Sed0015899 Sechium edule HOM05D000580 ORTHO05D006815 1.0e-27 126.3 74 83.8
CiPaw.10G124800 Carya illinoinensis HOM05D000580 ORTHO05D006815 1.8e-27 125.6 74 85.1
BolC2t08916H Brassica oleracea HOM05D000580 ORTHO05D006815 3.0e-27 124.8 70 88.6
CARHR292710 Cardamine hirsuta HOM05D000580 ORTHO05D006815 3.0e-27 124.8 74 85.1
Nitab4.5_0001105g0140 Nicotiana tabacum HOM05D000580 ORTHO05D006815 3.0e-27 124.8 79 81.0
RcHm_v2.0_CPg0501961 Rosa chinensis HOM05D000580 ORTHO05D006815 3.9e-27 124.4 75 85.3
CAN.G648.1 Capsicum annuum HOM05D000580 ORTHO05D006815 6.7e-27 123.6 80 78.8
Eucgr.B01572 Eucalyptus grandis HOM05D000580 ORTHO05D006815 6.7e-27 123.6 69 88.4
Gohir.A01G128325 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.5e-26 122.5 74 81.1
Gohir.D04G149675 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.5e-26 122.5 71 87.3
Gohir.A05G286600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.0e-26 122.1 74 83.8
Gohir.A13G110000 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.0e-26 122.1 74 82.4
CAN.G2018.9 Capsicum annuum HOM05D000580 ORTHO05D006815 5.7e-26 120.6 74 83.8
RcHm_v2.0_Chr6g0260481 Rosa chinensis HOM05D000580 ORTHO05D006815 5.7e-26 120.6 75 82.7
Gohir.A05G326916 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.3e-25 119.4 74 82.4
Gorai.005G164900 Gossypium raimondii HOM05D000580 ORTHO05D006815 1.3e-25 119.4 74 81.1
Potri.002G174001 Populus trichocarpa HOM05D000580 ORTHO05D006815 1.3e-25 119.4 72 81.9
RcHm_v2.0_Chr4g0390611 Rosa chinensis HOM05D000580 ORTHO05D006815 2.2e-25 118.6 75 82.7
Gohir.D02G147200 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 79.7
Gohir.D09G103600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.7e-25 117.9 74 79.7
Duzib026G0003 Durio zibethinus HOM05D000580 ORTHO05D001362 4.8e-25 117.5 67 83.6
Duzib124G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 4.8e-25 117.5 67 83.6
Duzib237G0002 Durio zibethinus HOM05D000580 ORTHO05D001362 4.8e-25 117.5 67 83.6
Duzib252G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 4.8e-25 117.5 67 83.6
Duzib256G0004 Durio zibethinus HOM05D000580 ORTHO05D001362 4.8e-25 117.5 67 83.6
Gorai.008G286600 Gossypium raimondii HOM05D000580 ORTHO05D006815 4.8e-25 117.5 74 79.7
Prupe.7G021700 Prunus persica HOM05D000580 ORTHO05D006815 6.3e-25 117.1 75 80.0
HanXRQChr01g0020261 Helianthus annuus HOM05D000580 ORTHO05D001785 8.2e-25 116.7 57 96.5
HanXRQChr07g0193501 Helianthus annuus HOM05D000580 ORTHO05D006815 8.2e-25 116.7 58 94.8
HanXRQChr10g0299321 Helianthus annuus HOM05D000580 ORTHO05D001785 8.2e-25 116.7 57 96.5
HanXRQChr11g0326921 Helianthus annuus HOM05D000580 ORTHO05D001785 8.2e-25 116.7 57 96.5
Hma1.2p1_0149F.1_g066500 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 1.1e-24 116.3 74 78.4
Gohir.A09G103075 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.8e-24 115.5 69 84.1
Medtr2g062930 Medicago truncatula HOM05D000580 ORTHO05D006815 1.8e-24 115.5 66 81.8
Gohir.A05G301450 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.1e-24 114.8 74 79.7
Lalb_Chr23g0274371 Lupinus albus HOM05D000580 ORTHO05D006815 3.1e-24 114.8 80 73.8
Glyma.03G065000 Glycine max HOM05D000580 ORTHO05D006815 4.1e-24 114.4 74 78.4
HanXRQChr02g0052541 Helianthus annuus HOM05D000580 ORTHO05D001785 4.1e-24 114.4 57 94.7
Gohir.D02G096801 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.0e-23 112.1 67 80.6
Gorai.005G110300 Gossypium raimondii HOM05D000580 ORTHO05D006815 2.6e-23 111.7 67 82.1
C07p15330 Brassica napus HOM05D000580 ORTHO05D006815 1.0e-22 109.8 62 82.3
Sed0008946 Sechium edule HOM05D000580 ORTHO05D006815 1.3e-22 109.4 74 77.0
Hund08570 Selenicereus undatus HOM05D000580 ORTHO05D006815 1.3e-22 109.4 72 79.2
Nitab4.5_0010531g0030 Nicotiana tabacum HOM05D000580 ORTHO05D006815 2.9e-22 108.2 74 77.0
EL10Ac1g01194 Beta vulgaris HOM05D000580 ORTHO05D001362 5.0e-22 107.5 63 87.3
Nitab4.5_0004376g0090 Nicotiana tabacum HOM05D000580 ORTHO05D006815 2.1e-20 102.1 57 86.0
Glyma.17G186400 Glycine max HOM05D000580 ORTHO05D006815 2.7e-20 101.7 58 82.8
Hund10713 Selenicereus undatus HOM05D000580 ORTHO05D001362 3.6e-20 101.3 77 70.1
Lsat_1_v5_gn_5_50340 Lactuca sativa HOM05D000580 ORTHO05D006815 4.7e-20 100.9 57 84.2
Gohir.A10G070250 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.8e-19 99.0 55 83.6
Psat6g181560 Pisum sativum HOM05D000580 ORTHO05D001785 1.8e-19 99.0 64 73.4
Peaxi162Scf00299g10016 Petunia axillaris HOM05D000580 ORTHO05D006815 2.3e-19 98.6 65 75.4
Solyc00g500026.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 6.7e-19 97.1 51 88.2
Solyc00g500072.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 6.7e-19 97.1 51 88.2
Medtr4g051375 Medicago truncatula HOM05D000580 ORTHO05D006815 3.3e-18 94.7 51 84.3
Psat0s7142g0160 Pisum sativum HOM05D000580 ORTHO05D001785 5.7e-18 94.0 61 73.8
SabraPtG0004100 Salix brachista HOM05D000580 ORTHO05D001785 7.4e-18 93.6 72 63.9
MELO3C033895.2 Cucumis melo HOM05D000580 ORTHO05D006815 1.7e-17 92.4 74 66.2
Peaxi162Scf00527g00037 Petunia axillaris HOM05D000580 ORTHO05D006815 1.7e-17 92.4 51 84.3
SabraMtG0010300 Salix brachista HOM05D000580 ORTHO05D006815 1.7e-17 92.4 50 86.0
Psat7g045200 Pisum sativum HOM05D000580 ORTHO05D006815 3.7e-17 91.3 61 70.5
Psat0s1446g0280 Pisum sativum HOM05D000580 ORTHO05D001785 1.4e-16 89.4 51 78.4
Ah.10g027190 Amaranthus hybridus HOM05D000580 ORTHO05D001785 2.4e-16 88.6 51 82.4
Ah.10g027480 Amaranthus hybridus HOM05D000580 ORTHO05D001785 2.4e-16 88.6 51 82.4
Ah.10g028960 Amaranthus hybridus HOM05D000580 ORTHO05D001785 7.0e-16 87.0 51 80.4
SMO086G0029 Selaginella moellendorffii HOM05D000580 ORTHO05D006815 2.6e-15 85.1 71 59.2
Sp5g12490 Schrenkiella parvula HOM05D000580 ORTHO05D006815 5.9e-15 84.0 45 84.4
Ah.10g027360 Amaranthus hybridus HOM05D000580 ORTHO05D006815 1.3e-14 82.8 54 75.9
Sc07g0006580 Simmondsia chinensis HOM05D000580 ORTHO05D006815 2.2e-14 82.0 53 71.7
Lalb_Chr01g0009811 Lupinus albus HOM05D000580 ORTHO05D006815 5.0e-14 80.9 41 92.7
Glyma.05G092100 Glycine max HOM05D000580 ORTHO05D006815 4.2e-13 77.8 42 81.0
Solyc11g006675.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 4.2e-13 77.8 40 85.0
LjContig00318g0018353 Lotus japonicus HOM05D000580 ORTHO05D001785 1.6e-12 75.9 43 76.7
BolSC29t60484H Brassica oleracea HOM05D000580 ORTHO05D006815 4.7e-12 74.3 40 82.5
MD04G1032200 Malus domestica HOM05D000580 ORTHO05D006815 8.0e-12 73.6 60 56.7
BolSC46t61022H Brassica oleracea HOM05D000580 ORTHO05D006815 3.3e-10 68.2 37 81.1
Migut.L00683 Erythranthe guttata HOM05D000580 ORTHO05D006815 5.7e-10 67.4 45 68.9
QL93p1043_0018 Quercus lobata HOM05D000580 ORTHO05D001785 6.3e-09 63.9 35 82.9
RcHm_v2.0_Chr2g0140191 Rosa chinensis HOM05D000580 ORTHO05D006815 6.3e-09 63.9 43 69.8
ClCG02G007580 Citrullus lanatus HOM05D000580 ORTHO05D006815 1.1e-08 63.2 36 77.8
Glyma.19G056032 Glycine max HOM05D000580 ORTHO05D006815 1.0e-06 56.6 32 90.6
Migut.D01365 Erythranthe guttata HOM05D000580 ORTHO05D006815 1.3e-06 56.2 28 96.4
Lalb_Chr23g0274191 Lupinus albus HOM05D000580 ORTHO05D006815 1.3e-06 56.2 38 68.4
Potri.011G074742 Populus trichocarpa HOM05D000580 ORTHO05D006815 1.3e-06 56.2 32 96.9
EL10As4g23447 Beta vulgaris HOM05D000580 ORTHO05D006815 1.7e-06 55.8 37 73.0
BraSC103t45479Z Brassica rapa HOM05D000580 ORTHO05D006815 3.8e-06 54.7 38 84.2


User provided reference genes

Program Settings