Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0034921 Helianthus annuus HOM05D003914 ORTHO05D001189 3.3e-80 301.6 145 100.0
HanXRQChr08g0217431 Helianthus annuus HOM05D003914 ORTHO05D001189 3.2e-67 258.5 126 99.2
HanXRQChr03g0080251 Helianthus annuus HOM05D003914 ORTHO05D001189 4.6e-66 254.6 124 99.2
HanXRQChr02g0034961 Helianthus annuus HOM05D003914 ORTHO05D001189 5.0e-65 251.1 123 98.4
ECA247G0583 Erigeron canadensis HOM05D003914 ORTHO05D001189 2.4e-51 205.7 125 79.2
Lsat_1_v5_gn_1_32000 Lactuca sativa HOM05D003914 ORTHO05D001189 7.8e-50 200.7 125 75.2
Rhsim08G0208100 Rhododendron simsii HOM05D003914 ORTHO05D001189 1.6e-42 176.4 125 68.8
CSS0032385 Camellia sinensis var. sinensis HOM05D003914 ORTHO05D001189 1.0e-41 173.7 125 68.0
vmacro19039 Vaccinium macrocarpon HOM05D003914 ORTHO05D001189 1.0e-41 173.7 125 67.2
Dinv21395 Davidia involucrata HOM05D003914 ORTHO05D001189 3.0e-41 172.2 125 67.2
Oeu010367.1 Olea europaea HOM05D003914 ORTHO05D001189 6.6e-41 171.0 125 64.0
GSVIVG01017553001 Vitis vinifera HOM05D003914 ORTHO05D001189 1.5e-40 169.9 125 65.6
Lj5A78T80 Lonicera japonica HOM05D003914 ORTHO05D001189 2.5e-40 169.1 125 66.4
Duzib235G0729 Durio zibethinus HOM05D003914 ORTHO05D001189 9.6e-40 167.2 125 65.6
CANSAT56G3222 Cannabis sativa HOM05D003914 ORTHO05D001189 2.8e-39 165.6 125 65.6
THA.LOC104812443 Tarenaya hassleriana HOM05D003914 ORTHO05D001189 2.8e-39 165.6 125 64.8
Thecc.06G038600 Theobroma cacao HOM05D003914 ORTHO05D001189 4.8e-39 164.9 125 64.8
Thhalv10018057m.g Eutrema salsugineum HOM05D003914 ORTHO05D001189 6.2e-39 164.5 125 62.4
Sp5g35080 Schrenkiella parvula HOM05D003914 ORTHO05D001189 6.2e-39 164.5 125 63.2
Cc04_g04890 Coffea canephora HOM05D003914 ORTHO05D001189 8.1e-39 164.1 125 64.0
MD08G1215300 Malus domestica HOM05D003914 ORTHO05D001189 8.1e-39 164.1 125 64.0
arahy.Tifrunner.gnm1.ann1.39XWEQ Arachis hypogaea HOM05D003914 ORTHO05D001189 1.1e-38 163.7 125 60.8
Lalb_Chr04g0247201 Lupinus albus HOM05D003914 ORTHO05D001189 1.1e-38 163.7 125 63.2
Manes.04G104700 Manihot esculenta HOM05D003914 ORTHO05D001189 1.8e-38 162.9 125 64.0
arahy.Tifrunner.gnm1.ann1.E1J0LN Arachis hypogaea HOM05D003914 ORTHO05D001189 2.4e-38 162.5 125 60.0
Cfa001895 Carpinus fangiana HOM05D003914 ORTHO05D001189 2.4e-38 162.5 125 64.0
QL05p034889 Quercus lobata HOM05D003914 ORTHO05D001189 2.4e-38 162.5 125 65.6
A07p26790 Brassica napus HOM05D003914 ORTHO05D001189 3.1e-38 162.2 125 61.6
BraA07t30322Z Brassica rapa HOM05D003914 ORTHO05D001189 3.1e-38 162.2 125 61.6
LjContig00081g0020682 Lotus japonicus HOM05D003914 ORTHO05D001189 3.1e-38 162.2 125 62.4
Prupe.2G099100 Prunus persica HOM05D003914 ORTHO05D001189 3.1e-38 162.2 125 63.2
Actinidia25447 Actinidia chinensis HOM05D003914 ORTHO05D001189 4.0e-38 161.8 125 63.2
Medtr5g097890 Medicago truncatula HOM05D003914 ORTHO05D001189 4.0e-38 161.8 125 63.2
SGA_v2.0_scaffold5G02755 Striga asiatica HOM05D003914 ORTHO05D001189 4.0e-38 161.8 125 61.6
DCAR_025582 Daucus carota HOM05D003914 ORTHO05D001189 5.3e-38 161.4 125 64.8
FAN08G1096 Fragaria x ananassa HOM05D003914 ORTHO05D001189 5.3e-38 161.4 124 62.1
A02p23230 Brassica napus HOM05D003914 ORTHO05D001189 6.9e-38 161.0 125 61.6
BraA02t07320Z Brassica rapa HOM05D003914 ORTHO05D001189 6.9e-38 161.0 125 61.6
BcaC08g45332 Brassica carinata HOM05D003914 ORTHO05D001189 1.2e-37 160.2 125 60.8
AL2G40760 Arabidopsis lyrata HOM05D003914 ORTHO05D001189 1.5e-37 159.8 125 62.4
Glyma.14G005800 Glycine max HOM05D003914 ORTHO05D001189 1.5e-37 159.8 125 60.8
Phvul.008G287100 Phaseolus vulgaris HOM05D003914 ORTHO05D001189 1.5e-37 159.8 125 60.0
Eucgr.F03948 Eucalyptus grandis HOM05D003914 ORTHO05D001189 2.0e-37 159.5 125 61.6
FvH4_5g27200 Fragaria vesca HOM05D003914 ORTHO05D001189 2.0e-37 159.5 125 62.4
FAN13G1654 Fragaria x ananassa HOM05D003914 ORTHO05D001189 2.0e-37 159.5 125 62.4
FAN18G0022 Fragaria x ananassa HOM05D003914 ORTHO05D001189 2.0e-37 159.5 125 62.4
BcaB05g25235 Brassica carinata HOM05D003914 ORTHO05D001189 2.6e-37 159.1 125 60.8
C06p29420 Brassica napus HOM05D003914 ORTHO05D001189 2.6e-37 159.1 125 60.8
BolC6t38107H Brassica oleracea HOM05D003914 ORTHO05D001189 2.6e-37 159.1 125 60.8
Carub.0002s2688 Capsella rubella HOM05D003914 ORTHO05D001189 2.6e-37 159.1 125 60.8
COL.COLO4_26660 Corchorus olitorius HOM05D003914 ORTHO05D001189 2.6e-37 159.1 124 62.9
RcHm_v2.0_Chr1g0336931 Rosa chinensis HOM05D003914 ORTHO05D001189 2.6e-37 159.1 125 62.4
VMungo0647G1679 Vigna mungo HOM05D003914 ORTHO05D001189 2.6e-37 159.1 125 60.8
C02p36990 Brassica napus HOM05D003914 ORTHO05D001189 3.4e-37 158.7 125 60.8
TPR.G15053 Trifolium pratense HOM05D003914 ORTHO05D001189 3.4e-37 158.7 125 60.8
arahy.Tifrunner.gnm1.ann1.448EM4 Arachis hypogaea HOM05D003914 ORTHO05D001189 4.5e-37 158.3 125 60.0
CiPaw.01G252800 Carya illinoinensis HOM05D003914 ORTHO05D001189 5.8e-37 157.9 125 62.4
Gohir.D10G082300 Gossypium hirsutum HOM05D003914 ORTHO05D001189 5.8e-37 157.9 125 62.4
Sc26g0002670 Simmondsia chinensis HOM05D003914 ORTHO05D001189 5.8e-37 157.9 125 60.0
TWI12G1414 Tripterygium wilfordii HOM05D003914 ORTHO05D001189 5.8e-37 157.9 125 61.6
AT1G80680 Arabidopsis thaliana HOM05D003914 ORTHO05D001189 7.6e-37 157.5 125 60.8
BcaB02g07257 Brassica carinata HOM05D003914 ORTHO05D001189 7.6e-37 157.5 125 60.8
CAN.G407.47 Capsicum annuum HOM05D003914 ORTHO05D001189 7.6e-37 157.5 125 61.6
Gorai.011G089200 Gossypium raimondii HOM05D003914 ORTHO05D001189 7.6e-37 157.5 125 62.4
Potri.003G180100 Populus trichocarpa HOM05D003914 ORTHO05D001189 9.9e-37 157.1 125 61.6
Gohir.A10G069101 Gossypium hirsutum HOM05D003914 ORTHO05D001189 1.7e-36 156.4 125 61.6
SalBow7G0967 Salvia bowleyana HOM05D003914 ORTHO05D001189 1.7e-36 156.4 125 61.6
PGR102G3368 Punica granatum HOM05D003914 ORTHO05D001189 2.2e-36 156.0 125 59.2
MD15G1399200 Malus domestica HOM05D003914 ORTHO05D001189 2.9e-36 155.6 125 59.2
Solyc03g117120.4 Solanum lycopersicum HOM05D003914 ORTHO05D001189 2.9e-36 155.6 124 60.5
Ca_06471_v3 Cicer arietinum L. HOM05D003914 ORTHO05D001189 6.4e-36 154.5 136 57.4
Ciclev10024784m.g Citrus clementina HOM05D003914 ORTHO05D001189 6.4e-36 154.5 125 59.2
PSO210G6726 Papaver somniferum HOM05D003914 ORTHO05D001189 6.4e-36 154.5 124 62.1
PSO447G0077 Papaver somniferum HOM05D003914 ORTHO05D001189 6.4e-36 154.5 124 62.1
Sopen03g036030 Solanum pennellii HOM05D003914 ORTHO05D001189 8.4e-36 154.1 124 60.5
Nn5g28958 Nelumbo nucifera HOM05D003914 ORTHO05D001189 1.4e-35 153.3 123 57.7
SalBow5G0986 Salvia bowleyana HOM05D003914 ORTHO05D001189 1.4e-35 153.3 125 60.8
SalBow5G1255 Salvia bowleyana HOM05D003914 ORTHO05D001189 1.4e-35 153.3 125 60.8
SalBow5G5560 Salvia bowleyana HOM05D003914 ORTHO05D001189 1.4e-35 153.3 125 60.8
TAR625G0765 Trochodendron aralioides HOM05D003914 ORTHO05D001189 1.9e-35 152.9 124 61.3
EL10Ac3g05211 Beta vulgaris HOM05D003914 ORTHO05D001189 2.4e-35 152.5 125 61.6
PGSC0003DMG400014195 Solanum tuberosum HOM05D003914 ORTHO05D001189 2.4e-35 152.5 124 59.7
Aa31LG7G450 Aethionema arabicum HOM05D003914 ORTHO05D001189 4.2e-35 151.8 125 59.2
Aqoxy7G03430 Aquilegia oxysepala HOM05D003914 ORTHO05D001189 4.2e-35 151.8 124 57.3
AUR62019191 Chenopodium quinoa HOM05D003914 ORTHO05D001189 4.2e-35 151.8 125 63.2
ClCG02G022560 Citrullus lanatus HOM05D003914 ORTHO05D001189 4.2e-35 151.8 124 58.1
CDE05G2347 Ceratophyllum demersum HOM05D003914 ORTHO05D001189 5.4e-35 151.4 124 56.5
Migut.I00709 Erythranthe guttata HOM05D003914 ORTHO05D001189 9.3e-35 150.6 125 60.0
ATR0048G029 Amborella trichopoda HOM05D003914 ORTHO05D001189 6.0e-34 147.9 124 59.7
CsaV3_6G038690 Cucumis sativus L. HOM05D005551 ORTHO05D001189 6.0e-34 147.9 124 56.5
Peaxi162Scf00332g00329 Petunia axillaris HOM05D003914 ORTHO05D001189 6.0e-34 147.9 125 58.4
MELO3C014532.2 Cucumis melo HOM05D003914 ORTHO05D001189 7.9e-34 147.5 124 54.8
Sed0002099 Sechium edule HOM05D003914 ORTHO05D001189 1.0e-33 147.1 124 56.5
Zm00001eb037140 Zea mays HOM05D003914 ORTHO05D001189 2.1e-31 139.4 124 48.4
Zm00001eb336550 Zea mays HOM05D003914 ORTHO05D001189 2.1e-31 139.4 124 48.4
Zm00001eb402160 Zea mays HOM05D003914 ORTHO05D001189 2.1e-31 139.4 124 48.4
Zm00001eb072150 Zea mays HOM05D003914 ORTHO05D001189 2.8e-31 139.0 124 48.4
TAR381G0623 Trochodendron aralioides HOM05D003914 ORTHO05D001189 4.8e-31 138.3 124 57.3
HPP92_024673 Vanilla planifolia HOM05D003914 ORTHO05D001189 4.8e-31 138.3 125 54.4
Zm00001eb075600 Zea mays HOM05D003914 ORTHO05D001189 1.4e-30 136.7 124 47.6
arahy.Tifrunner.gnm1.ann1.AIB04B Arachis hypogaea HOM05D003914 ORTHO05D001189 1.8e-30 136.3 125 54.4
Zm00001eb104230 Zea mays HOM05D003914 ORTHO05D001189 4.0e-30 135.2 124 47.6
Os03g0172000 Oryza sativa ssp. japonica HOM05D003914 ORTHO05D001189 6.9e-30 134.4 124 48.4
Ah.02g130190 Amaranthus hybridus HOM05D003914 ORTHO05D001189 3.4e-29 132.1 92 67.4
Zm00001eb242170 Zea mays HOM05D003914 ORTHO05D001189 2.9e-28 129.0 124 46.0
AUR62026733 Chenopodium quinoa HOM05D003914 ORTHO05D001189 3.8e-28 128.6 183 43.2
CARHR073840 Cardamine hirsuta HOM05D003914 ORTHO05D001189 1.9e-27 126.3 95 65.3
SEGI_18885 Sequoiadendron giganteum HOM05D003914 ORTHO05D001189 9.3e-27 124.0 124 49.2
Nitab4.5_0011117g0010 Nicotiana tabacum HOM05D003914 ORTHO05D001189 1.2e-26 123.6 91 67.0
unitig_61.g26229 Utricularia gibba HOM05D003914 ORTHO05D001189 4.6e-26 121.7 131 48.1
Nitab4.5_0001454g0080 Nicotiana tabacum HOM05D003914 ORTHO05D001189 1.0e-25 120.6 90 66.7
MBI05_g01294_MAGBIO Magnolia biondii HOM05D003914 ORTHO05D001189 1.5e-24 116.7 92 62.0
Actinidia28303 Actinidia chinensis HOM05D003914 ORTHO05D001189 1.9e-24 116.3 123 54.5
Haze_16646 Corylus avellana HOM05D003914 ORTHO05D001189 4.3e-24 115.2 230 34.3
Pp3c26_7720 Physcomitrium patens HOM05D003914 ORTHO05D001189 7.4e-24 114.4 125 44.8
SMO367G0807 Selaginella moellendorffii HOM05D003914 ORTHO05D001189 1.5e-21 106.7 120 45.0
Mapoly0028s0046 Marchantia polymorpha HOM05D003914 ORTHO05D001189 1.3e-20 103.6 124 41.1
Atru.chr10.2396 Acer truncatum HOM05D003914 ORTHO05D001189 1.7e-20 103.2 72 65.3
AagrBONN_evm.TU.Sc2ySwM_340.72 Anthoceros agrestis HOM05D003914 ORTHO05D001189 1.4e-19 100.1 115 43.5
Nn1g04288 Nelumbo nucifera HOM05D003914 ORTHO05D001189 2.7e-18 95.9 90 52.2
AUR62013548 Chenopodium quinoa HOM05D003914 ORTHO05D001189 4.3e-16 88.6 134 42.5
Zm00001eb052930 Zea mays HOM05D003914 ORTHO05D006988 1.6e-15 86.7 84 44.0
Zm00001eb421450 Zea mays HOM05D003914 ORTHO05D001189 1.4e-14 83.6 87 43.7
Zm00001eb059520 Zea mays HOM05D003914 ORTHO05D001189 1.8e-14 83.2 72 47.2
Pp3c26_7670 Physcomitrium patens HOM05D003914 ORTHO05D001189 2.4e-14 82.8 85 44.7
SHI11253 Sapria himalayana HOM05D003914 ORTHO05D001189 9.0e-14 80.9 76 51.3
HanXRQChr03g0080271 Helianthus annuus HOM05D003914 ORTHO05D001189 5.5e-11 71.6 32 100.0
Zm00001eb236280 Zea mays HOM05D003914 ORTHO05D001189 3.9e-09 65.5 72 40.3
CBR_g34675 Chara braunii HOM05D003914 ORTHO05D001189 1.1e-08 63.9 110 34.5
SalBow5G5111 Salvia bowleyana HOM05D003914 ORTHO05D001189 1.7e-07 60.1 51 54.9
Psat2g003960 Pisum sativum HOM05D003914 ORTHO05D001189 3.1e-06 55.8 51 51.0


User provided reference genes

Program Settings