Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0024181 Helianthus annuus HOM05D004250 ORTHO05D005264 3.6e-76 288.1 141 100.0
HanXRQChr03g0076651 Helianthus annuus HOM05D004250 ORTHO05D005264 1.2e-23 113.6 60 90.0
unitig_46.g18525 Utricularia gibba HOM05D004250 ORTHO05D005264 2.3e-22 109.4 61 83.6
Nitab4.5_0004488g0050 Nicotiana tabacum HOM05D004250 ORTHO05D005264 3.0e-22 109.0 63 81.0
Nitab4.5_0000611g0160 Nicotiana tabacum HOM05D004250 ORTHO05D005264 3.9e-22 108.6 60 85.0
PGSC0003DMG400022138 Solanum tuberosum HOM05D004250 ORTHO05D005264 3.9e-22 108.6 63 82.5
Medtr3g009270 Medicago truncatula HOM05D004250 ORTHO05D005264 6.7e-22 107.8 60 85.0
Phvul.005G006100 Phaseolus vulgaris HOM05D004250 ORTHO05D005264 6.7e-22 107.8 60 85.0
Psat5g231040 Pisum sativum HOM05D004250 ORTHO05D005264 6.7e-22 107.8 60 85.0
Cpa.g.sc12.53 Carica papaya HOM05D004250 ORTHO05D005264 1.5e-21 106.7 60 83.3
Lj3g0022167 Lotus japonicus HOM05D004250 ORTHO05D005264 1.5e-21 106.7 60 83.3
Thecc.07G000400 Theobroma cacao HOM05D004250 ORTHO05D005264 1.5e-21 106.7 60 83.3
Ca_14123_v3 Cicer arietinum L. HOM05D004250 ORTHO05D005264 2.6e-21 105.9 60 83.3
Lsat_1_v5_gn_9_88440 Lactuca sativa HOM05D004250 ORTHO05D005264 2.6e-21 105.9 60 85.0
Lalb_Chr18g0048731 Lupinus albus HOM05D004250 ORTHO05D005264 2.6e-21 105.9 60 83.3
Oeu052877.1 Olea europaea HOM05D004250 ORTHO05D005264 2.6e-21 105.9 60 81.7
Lj1A902T42 Lonicera japonica HOM05D004250 ORTHO05D005264 3.3e-21 105.5 60 83.3
PGR031G3775 Punica granatum HOM05D004250 ORTHO05D005264 3.3e-21 105.5 60 81.7
GSVIVG01014869001 Vitis vinifera HOM05D004250 ORTHO05D005264 3.3e-21 105.5 60 83.3
ClCG09G021790 Citrullus lanatus HOM05D004250 ORTHO05D005264 5.7e-21 104.8 60 83.3
Cc05_g15830 Coffea canephora HOM05D004250 ORTHO05D005264 5.7e-21 104.8 60 83.3
ECA240G3010 Erigeron canadensis HOM05D004250 ORTHO05D005264 5.7e-21 104.8 60 83.3
Glyma.06G320400 Glycine max HOM05D004250 ORTHO05D005264 5.7e-21 104.8 60 83.3
HanXRQChr13g0409281 Helianthus annuus HOM05D004250 ORTHO05D005264 5.7e-21 104.8 60 85.0
Lalb_Chr04g0259411 Lupinus albus HOM05D004250 ORTHO05D005264 5.7e-21 104.8 60 81.7
Sabra11G0137100 Salix brachista HOM05D004250 ORTHO05D005264 5.7e-21 104.8 60 81.7
VMungo1080G0729 Vigna mungo HOM05D004250 ORTHO05D005264 5.7e-21 104.8 60 83.3
CiPaw.11G211400 Carya illinoinensis HOM05D004250 ORTHO05D005264 7.4e-21 104.4 60 81.7
FvH4_3g41360 Fragaria vesca HOM05D004250 ORTHO05D005264 7.4e-21 104.4 60 81.7
FAN11G0503 Fragaria x ananassa HOM05D004250 ORTHO05D005264 7.4e-21 104.4 60 81.7
FAN16G1338 Fragaria x ananassa HOM05D004250 ORTHO05D005264 7.4e-21 104.4 60 81.7
FAN21G3674 Fragaria x ananassa HOM05D004250 ORTHO05D005264 7.4e-21 104.4 60 81.7
FAN25G1562 Fragaria x ananassa HOM05D004250 ORTHO05D005264 7.4e-21 104.4 60 81.7
Potri.011G169900 Populus trichocarpa HOM05D004250 ORTHO05D005264 7.4e-21 104.4 60 81.7
Solyc10g005660.3 Solanum lycopersicum HOM05D004250 ORTHO05D005264 7.4e-21 104.4 60 81.7
Sopen10g001630 Solanum pennellii HOM05D004250 ORTHO05D005264 7.4e-21 104.4 60 81.7
PGSC0003DMG400011272 Solanum tuberosum HOM05D004250 ORTHO05D005264 7.4e-21 104.4 60 81.7
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 9.7e-21 104.0 60 81.7
Gohir.A13G127700 Gossypium hirsutum HOM05D004250 ORTHO05D005264 9.7e-21 104.0 60 80.0
Gohir.D13G131400 Gossypium hirsutum HOM05D004250 ORTHO05D005264 9.7e-21 104.0 60 80.0
Gorai.013G147400 Gossypium raimondii HOM05D004250 ORTHO05D005264 9.7e-21 104.0 60 80.0
Hund12926 Selenicereus undatus HOM05D004250 ORTHO05D005264 9.7e-21 104.0 60 81.7
TPR.G16718 Trifolium pratense HOM05D004250 ORTHO05D005264 9.7e-21 104.0 60 81.7
CSS0027583 Camellia sinensis var. sinensis HOM05D004250 ORTHO05D005264 1.3e-20 103.6 60 81.7
Ciclev10008979m.g Citrus clementina HOM05D004250 ORTHO05D005264 1.3e-20 103.6 60 81.7
Haze_09928 Corylus avellana HOM05D004250 ORTHO05D005264 1.3e-20 103.6 60 81.7
Atru.chr2.3911 Acer truncatum HOM05D004250 ORTHO05D005264 1.7e-20 103.2 60 81.7
Duzib268G1454 Durio zibethinus HOM05D004250 ORTHO05D005264 1.7e-20 103.2 60 81.7
Glyma.04G115900 Glycine max HOM05D004250 ORTHO05D005264 1.7e-20 103.2 60 81.7
MD03G1045500 Malus domestica HOM05D004250 ORTHO05D005264 1.7e-20 103.2 60 81.7
MD11G1047700 Malus domestica HOM05D004250 ORTHO05D005264 1.7e-20 103.2 60 81.7
Oeu061794.1 Olea europaea HOM05D004250 ORTHO05D005264 1.7e-20 103.2 59 81.4
Prupe.6G036800 Prunus persica HOM05D004250 ORTHO05D005264 1.7e-20 103.2 60 81.7
MSTRG.14533 Avicennia marina HOM05D004250 ORTHO05D005264 2.2e-20 102.8 60 80.0
CSS0003988 Camellia sinensis var. sinensis HOM05D004250 ORTHO05D005264 2.2e-20 102.8 60 80.0
CSS0046656 Camellia sinensis var. sinensis HOM05D004250 ORTHO05D005264 2.2e-20 102.8 60 80.0
BcaC04g20112 Brassica carinata HOM05D004250 ORTHO05D005264 2.8e-20 102.4 60 80.0
C09p47550 Brassica napus HOM05D004250 ORTHO05D005264 2.8e-20 102.4 60 80.0
BolC9t57609H Brassica oleracea HOM05D004250 ORTHO05D005264 2.8e-20 102.4 60 80.0
Nn1g07611 Nelumbo nucifera HOM05D004250 ORTHO05D005264 2.8e-20 102.4 60 81.7
TAR626G0831 Trochodendron aralioides HOM05D004250 ORTHO05D005264 2.8e-20 102.4 60 81.7
CAN.G943.20 Capsicum annuum HOM05D004250 ORTHO05D005264 3.7e-20 102.1 60 80.0
Manes.01G008500 Manihot esculenta HOM05D004250 ORTHO05D005264 3.7e-20 102.1 60 80.0
QL08p000150 Quercus lobata HOM05D004250 ORTHO05D005264 3.7e-20 102.1 60 81.7
SGA_v2.0_scaffold7G03561 Striga asiatica HOM05D004250 ORTHO05D005264 3.7e-20 102.1 60 81.7
AT5G56280 Arabidopsis thaliana HOM05D004250 ORTHO05D005264 4.8e-20 101.7 60 81.7
Carub.0008s1660 Capsella rubella HOM05D004250 ORTHO05D005264 4.8e-20 101.7 60 81.7
MELO3C013230.2 Cucumis melo HOM05D004250 ORTHO05D005264 4.8e-20 101.7 60 81.7
CsaV3_7G021250 Cucumis sativus L. HOM05D004250 ORTHO05D005264 4.8e-20 101.7 60 81.7
Dinv42528 Davidia involucrata HOM05D004250 ORTHO05D005264 4.8e-20 101.7 59 81.4
Manes.01G008200 Manihot esculenta HOM05D004250 ORTHO05D005264 4.8e-20 101.7 60 80.0
AUR62012490 Chenopodium quinoa HOM05D004250 ORTHO05D005264 6.3e-20 101.3 60 81.7
AUR62014705 Chenopodium quinoa HOM05D004250 ORTHO05D005264 6.3e-20 101.3 60 81.7
Duzib170G0346 Durio zibethinus HOM05D004250 ORTHO05D005264 6.3e-20 101.3 60 81.7
THA.LOC104811707 Tarenaya hassleriana HOM05D004250 ORTHO05D005264 6.3e-20 101.3 60 80.0
Aa31LG3G12190 Aethionema arabicum HOM05D004250 ORTHO05D005264 8.2e-20 100.9 60 78.3
Nn2g14378 Nelumbo nucifera HOM05D004250 ORTHO05D005264 8.2e-20 100.9 60 80.0
Oeu052019.1 Olea europaea HOM05D004250 ORTHO05D005264 8.2e-20 100.9 74 67.6
SalBow8G0719 Salvia bowleyana HOM05D004250 ORTHO05D005264 8.2e-20 100.9 60 78.3
Sc03g0011830 Simmondsia chinensis HOM05D004250 ORTHO05D005264 8.2e-20 100.9 60 80.0
TWI14G0209 Tripterygium wilfordii HOM05D004250 ORTHO05D005264 8.2e-20 100.9 60 78.3
TWI39G0164 Tripterygium wilfordii HOM05D004250 ORTHO05D005264 8.2e-20 100.9 60 78.3
AL8G31910 Arabidopsis lyrata HOM05D004250 ORTHO05D005264 1.1e-19 100.5 60 80.0
Thhalv10014144m.g Eutrema salsugineum HOM05D004250 ORTHO05D005264 1.1e-19 100.5 60 81.7
CARHR269680 Cardamine hirsuta HOM05D004250 ORTHO05D005264 1.4e-19 100.1 60 80.0
THA.LOC104817729 Tarenaya hassleriana HOM05D004250 ORTHO05D005264 1.4e-19 100.1 60 80.0
EL10Ac8g20543 Beta vulgaris HOM05D004250 ORTHO05D005264 1.8e-19 99.8 60 81.7
A10p13550 Brassica napus HOM05D004250 ORTHO05D005264 1.8e-19 99.8 60 78.3
BraA10t43459Z Brassica rapa HOM05D004250 ORTHO05D005264 1.8e-19 99.8 60 78.3
arahy.Tifrunner.gnm1.ann1.22L1JW Arachis hypogaea HOM05D004250 ORTHO05D005264 2.4e-19 99.4 60 80.0
arahy.Tifrunner.gnm1.ann1.LZ5KER Arachis hypogaea HOM05D004250 ORTHO05D005264 2.4e-19 99.4 60 80.0
CANSAT11G0977 Cannabis sativa HOM05D004250 ORTHO05D005264 2.4e-19 99.4 60 78.3
DCAR_013752 Daucus carota HOM05D004250 ORTHO05D005264 2.4e-19 99.4 60 76.7
Sed0017579 Sechium edule HOM05D004250 ORTHO05D005264 2.4e-19 99.4 60 80.0
Hma1.2p1_0193F.1_g084430 Hydrangea macrophylla HOM05D004250 ORTHO05D005264 3.1e-19 99.0 63 79.4
Sp6g18130 Schrenkiella parvula HOM05D004250 ORTHO05D005264 3.1e-19 99.0 60 80.0
SGA_v2.0_scaffold186G40229 Striga asiatica HOM05D004250 ORTHO05D005264 3.1e-19 99.0 59 79.7
TWI38G1388 Tripterygium wilfordii HOM05D004250 ORTHO05D005264 3.1e-19 99.0 60 78.3
Lsat_1_v5_gn_4_100601 Lactuca sativa HOM05D004250 ORTHO05D005264 4.1e-19 98.6 59 78.0
Migut.M01574 Erythranthe guttata HOM05D004250 ORTHO05D005264 5.3e-19 98.2 60 75.0
Carub.0007s1450 Capsella rubella HOM05D004250 ORTHO05D005264 6.9e-19 97.8 60 78.3
Gohir.A08G026400 Gossypium hirsutum HOM05D004250 ORTHO05D005264 6.9e-19 97.8 60 75.0
Gohir.D08G036800 Gossypium hirsutum HOM05D004250 ORTHO05D005264 6.9e-19 97.8 60 75.0
Gorai.004G034800 Gossypium raimondii HOM05D004250 ORTHO05D005264 6.9e-19 97.8 60 75.0
AL7G26520 Arabidopsis lyrata HOM05D004250 ORTHO05D005264 1.2e-18 97.1 60 76.7
Sp7g24340 Schrenkiella parvula HOM05D004250 ORTHO05D005264 1.2e-18 97.1 60 76.7
Aa31LG5G11770 Aethionema arabicum HOM05D004250 ORTHO05D005264 1.5e-18 96.7 60 76.7
BcaNung02419 Brassica carinata HOM05D004250 ORTHO05D005264 1.5e-18 96.7 60 78.3
Thhalv10025688m.g Eutrema salsugineum HOM05D004250 ORTHO05D005264 1.5e-18 96.7 60 76.7
PSO063G3722 Papaver somniferum HOM05D004250 ORTHO05D005264 1.5e-18 96.7 60 76.7
PSO782G2166 Papaver somniferum HOM05D004250 ORTHO05D005264 1.5e-18 96.7 60 76.7
Aqoxy3G04043 Aquilegia oxysepala HOM05D004250 ORTHO05D005264 3.4e-18 95.5 60 76.7
BcaC09g50705 Brassica carinata HOM05D004250 ORTHO05D005264 3.4e-18 95.5 60 76.7
A01p17650 Brassica napus HOM05D004250 ORTHO05D005264 3.4e-18 95.5 60 76.7
C01p22290 Brassica napus HOM05D004250 ORTHO05D005264 3.4e-18 95.5 60 76.7
BolC1t02162H Brassica oleracea HOM05D004250 ORTHO05D005264 3.4e-18 95.5 60 76.7
BraA01t01720Z Brassica rapa HOM05D004250 ORTHO05D005264 3.4e-18 95.5 60 76.7
DCAR_016810 Daucus carota HOM05D004250 ORTHO05D005264 3.4e-18 95.5 60 75.0
Ah.09g236430 Amaranthus hybridus HOM05D004250 ORTHO05D005264 5.9e-18 94.7 60 73.3
AT4G26430 Arabidopsis thaliana HOM05D004250 ORTHO05D005264 1.0e-17 94.0 60 73.3
A03p56690 Brassica napus HOM05D004250 ORTHO05D005264 1.7e-17 93.2 60 73.3
BraA03t14739Z Brassica rapa HOM05D004250 ORTHO05D005264 1.7e-17 93.2 60 73.3
CARHR233990 Cardamine hirsuta HOM05D004250 ORTHO05D005264 1.7e-17 93.2 60 73.3
BcaC06g32749 Brassica carinata HOM05D004250 ORTHO05D005264 6.5e-17 91.3 60 73.3
BcaNung02422 Brassica carinata HOM05D004250 ORTHO05D005264 6.5e-17 91.3 60 70.0
C07p54890 Brassica napus HOM05D004250 ORTHO05D005264 1.4e-16 90.1 60 70.0
BolC7t45977H Brassica oleracea HOM05D004250 ORTHO05D005264 1.4e-16 90.1 60 70.0
Os08g0500000 Oryza sativa ssp. japonica HOM05D004250 ORTHO05D005264 1.9e-16 89.7 60 68.3
SHI16643 Sapria himalayana HOM05D004250 ORTHO05D005264 1.9e-16 89.7 60 73.3
Zm00001eb034040 Zea mays HOM05D004250 ORTHO05D005264 1.9e-16 89.7 60 66.7
Zm00001eb199540 Zea mays HOM05D004250 ORTHO05D005264 1.9e-16 89.7 60 68.3
Rhsim04G0006600 Rhododendron simsii HOM05D004250 ORTHO05D005264 4.2e-16 88.6 68 67.6
Pp3c14_22830 Physcomitrium patens HOM05D004250 ORTHO05D005264 1.6e-15 86.7 60 66.7
Mapoly0151s0043 Marchantia polymorpha HOM05D004250 ORTHO05D005264 4.7e-15 85.1 60 66.7
SEGI_37935 Sequoiadendron giganteum HOM05D004250 ORTHO05D005264 1.4e-14 83.6 60 65.0
ATR0751G160 Amborella trichopoda HOM05D004250 ORTHO05D005264 2.3e-14 82.8 60 63.3
vmacro09793 Vaccinium macrocarpon HOM05D004250 ORTHO05D005264 3.0e-14 82.4 76 59.2
SMO367G0766 Selaginella moellendorffii HOM05D004250 ORTHO05D005264 6.7e-14 81.3 59 66.1
AagrBONN_evm.TU.Sc2ySwM_362.2287 Anthoceros agrestis HOM05D004250 ORTHO05D005264 8.8e-14 80.9 60 65.0
Sed0022093 Sechium edule HOM05D004250 ORTHO05D005264 3.3e-13 79.0 60 66.7
HanXRQChr08g0231591 Helianthus annuus HOM05D031617 ORTHO05D227726 6.3e-12 74.7 37 97.3
HanXRQChr15g0495081 Helianthus annuus HOM05D031617 ORTHO05D221881 6.3e-12 74.7 37 97.3
CBR_g38485 Chara braunii HOM05D004250 ORTHO05D005264 5.0e-09 65.1 61 57.4
Peaxi162Scf00232g00910 Petunia axillaris HOM05D004250 ORTHO05D005264 1.5e-08 63.5 60 55.0
Pp3c17_21990 Physcomitrium patens HOM05D004250 ORTHO05D005264 9.4e-08 60.8 66 53.0
Eucgr.F03640 Eucalyptus grandis HOM05D004250 ORTHO05D005264 2.7e-07 59.3 47 63.8
Os12g0622900 Oryza sativa ssp. japonica HOM05D004250 ORTHO05D005264 8.0e-07 57.8 58 44.8
Nitab4.5_0000294g0190 Nicotiana tabacum HOM05D004250 ORTHO05D005264 2.3e-06 56.2 33 72.7
Actinidia37105 Actinidia chinensis HOM05D004250 ORTHO05D005264 6.7e-06 54.7 29 82.8


User provided reference genes

Program Settings