Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0010651 Helianthus annuus HOM05D006744 ORTHO05D008730 8.9e-274 946.4 512 100.0
HanXRQChr11g0340641 Helianthus annuus HOM05D006744 ORTHO05D008730 1.8e-189 666.4 516 73.4
ECA248G1499 Erigeron canadensis HOM05D006744 ORTHO05D008730 7.5e-188 661.0 507 75.1
Lsat_1_v5_gn_5_169660 Lactuca sativa HOM05D006744 ORTHO05D008730 1.3e-179 633.6 515 72.8
DCAR_005941 Daucus carota HOM05D006744 ORTHO05D008730 1.1e-135 487.6 535 57.2
TAR636G2563 Trochodendron aralioides HOM05D006744 ORTHO05D008730 1.7e-131 473.8 545 55.2
RcHm_v2.0_Chr5g0066371 Rosa chinensis HOM05D006744 ORTHO05D008730 3.8e-131 472.6 548 54.7
FvH4_3g36950 Fragaria vesca HOM05D006744 ORTHO05D008730 3.5e-129 466.1 546 54.8
Lalb_Chr01g0003461 Lupinus albus HOM05D006744 ORTHO05D008730 1.0e-128 464.5 548 54.6
Manes.02G128600 Manihot esculenta HOM05D006744 ORTHO05D008730 1.3e-128 464.2 526 55.7
TWI79G0292 Tripterygium wilfordii HOM05D006744 ORTHO05D008730 1.3e-128 464.2 538 56.7
VMungo1127G1123 Vigna mungo HOM05D006744 ORTHO05D008730 1.3e-128 464.2 547 55.4
CANSAT54G0933 Cannabis sativa HOM05D006744 ORTHO05D008730 8.7e-128 461.5 546 55.3
Nn2g11215 Nelumbo nucifera HOM05D006744 ORTHO05D008730 1.1e-127 461.1 543 53.8
Migut.D00876 Erythranthe guttata HOM05D006744 ORTHO05D008730 1.9e-127 460.3 541 54.3
Glyma.11G135900 Glycine max HOM05D006744 ORTHO05D008730 9.6e-127 458.0 542 53.3
TAR636G3279 Trochodendron aralioides HOM05D006744 ORTHO05D008730 9.6e-127 458.0 545 54.3
vmacro03026 Vaccinium macrocarpon HOM05D006744 ORTHO05D008730 1.3e-126 457.6 528 56.4
Ca_20615_v3 Cicer arietinum L. HOM05D006744 ORTHO05D008730 3.6e-126 456.1 539 54.9
CSS0020219 Camellia sinensis var. sinensis HOM05D006744 ORTHO05D008730 6.2e-126 455.3 550 52.9
Atru.chr3.3995 Acer truncatum HOM05D006744 ORTHO05D008730 8.1e-126 454.9 543 54.3
CSS0019879 Camellia sinensis var. sinensis HOM05D006744 ORTHO05D008730 1.1e-125 454.5 550 52.9
Potri.001G244800 Populus trichocarpa HOM05D006744 ORTHO05D008730 1.4e-125 454.1 532 55.6
Prupe.6G070200 Prunus persica HOM05D006744 ORTHO05D008730 1.4e-125 454.1 533 55.7
DCAR_007429 Daucus carota HOM05D006744 ORTHO05D008730 2.4e-125 453.4 522 54.0
Potri.009G037000 Populus trichocarpa HOM05D006744 ORTHO05D008730 3.1e-125 453.0 526 56.1
Lj3g0003575 Lotus japonicus HOM05D006744 ORTHO05D008730 9.0e-125 451.4 550 53.1
QL01p029218 Quercus lobata HOM05D006744 ORTHO05D008730 2.6e-124 449.9 551 52.8
Solyc06g005710.3 Solanum lycopersicum HOM05D006744 ORTHO05D008730 2.6e-124 449.9 521 56.4
MSTRG.21220 Avicennia marina HOM05D006744 ORTHO05D008730 3.4e-124 449.5 524 56.3
Sopen06g001690 Solanum pennellii HOM05D006744 ORTHO05D008730 4.5e-124 449.1 521 56.2
Thecc.09G315400 Theobroma cacao HOM05D006744 ORTHO05D008730 4.5e-124 449.1 526 55.7
Psat7g210440 Pisum sativum HOM05D006744 ORTHO05D008730 5.8e-124 448.7 536 53.2
MBI14_g11597_MAGBIO Magnolia biondii HOM05D006744 ORTHO05D008730 9.9e-124 448.0 540 52.0
arahy.Tifrunner.gnm1.ann1.6RB142 Arachis hypogaea HOM05D006744 ORTHO05D008730 2.2e-123 446.8 550 51.8
PGSC0003DMG400002146 Solanum tuberosum HOM05D006744 ORTHO05D008730 3.8e-123 446.0 520 56.5
Duzib168G0134 Durio zibethinus HOM05D006744 ORTHO05D008730 1.1e-122 444.5 533 54.2
Eucgr.B02306 Eucalyptus grandis HOM05D006744 ORTHO05D008730 1.1e-122 444.5 560 52.0
Gohir.D07G104700 Gossypium hirsutum HOM05D006744 ORTHO05D008730 1.4e-122 444.1 553 53.3
Phvul.011G061600 Phaseolus vulgaris HOM05D006744 ORTHO05D008730 1.4e-122 444.1 529 54.6
Glyma.12G059600 Glycine max HOM05D006744 ORTHO05D008730 2.4e-122 443.4 529 53.7
MD03G1086000 Malus domestica HOM05D006744 ORTHO05D008730 2.4e-122 443.4 552 52.4
CAN.G141.11 Capsicum annuum HOM05D006744 ORTHO05D008730 1.6e-121 440.7 521 56.4
CiPaw.13G089100 Carya illinoinensis HOM05D006744 ORTHO05D008730 1.6e-121 440.7 526 53.4
Peaxi162Scf00265g00210 Petunia axillaris HOM05D006744 ORTHO05D008730 1.6e-121 440.7 546 54.0
arahy.Tifrunner.gnm1.ann1.5LUI7K Arachis hypogaea HOM05D006744 ORTHO05D008730 3.5e-121 439.5 558 51.1
MELO3C025888.2 Cucumis melo HOM05D006744 ORTHO05D008730 1.0e-120 438.0 591 51.9
Cc01_g13360 Coffea canephora HOM05D006744 ORTHO05D008730 5.1e-120 435.6 589 49.9
Gorai.001G112600 Gossypium raimondii HOM05D006744 ORTHO05D008730 5.1e-120 435.6 551 53.0
EL10Ac7g16071 Beta vulgaris HOM05D006744 ORTHO05D008730 1.1e-119 434.5 560 50.5
Oeu004177.1 Olea europaea HOM05D006744 ORTHO05D008730 1.5e-119 434.1 536 53.2
BcaB05g23514 Brassica carinata HOM05D006744 ORTHO05D008730 1.9e-119 433.7 538 52.0
AUR62020042 Chenopodium quinoa HOM05D006744 ORTHO05D008730 1.9e-119 433.7 543 50.1
Gohir.A07G100500 Gossypium hirsutum HOM05D006744 ORTHO05D008730 1.9e-119 433.7 550 52.7
CsaV3_6G016590 Cucumis sativus L. HOM05D006744 ORTHO05D008730 2.5e-119 433.3 586 50.7
CsaV3_7G010020 Cucumis sativus L. HOM05D006744 ORTHO05D008730 2.5e-119 433.3 586 50.7
Lj2C1069T8 Lonicera japonica HOM05D006744 ORTHO05D008730 7.4e-119 431.8 560 51.8
THA.LOC104810751 Tarenaya hassleriana HOM05D006744 ORTHO05D008730 6.2e-118 428.7 542 51.7
TPR.G23627 Trifolium pratense HOM05D006744 ORTHO05D008730 1.1e-117 427.9 551 51.9
A01p26030 Brassica napus HOM05D006744 ORTHO05D008730 1.4e-117 427.6 538 51.5
Carub.0005s1303 Capsella rubella HOM05D006744 ORTHO05D008730 1.4e-117 427.6 578 49.5
BolC1t03248H Brassica oleracea HOM05D006744 ORTHO05D008730 1.8e-117 427.2 540 51.1
BraA01t02520Z Brassica rapa HOM05D006744 ORTHO05D008730 1.8e-117 427.2 538 51.5
Haze_24176 Corylus avellana HOM05D006744 ORTHO05D008730 1.8e-117 427.2 582 51.4
Manes.01G169200 Manihot esculenta HOM05D006744 ORTHO05D008730 9.0e-117 424.9 547 51.6
Thhalv10002484m.g Eutrema salsugineum HOM05D006744 ORTHO05D008730 4.5e-116 422.5 532 52.6
PSO513G0104 Papaver somniferum HOM05D006744 ORTHO05D008730 4.5e-116 422.5 536 53.0
PGR102G0876 Punica granatum HOM05D006744 ORTHO05D008730 5.8e-116 422.2 553 52.3
Ah.08g220080 Amaranthus hybridus HOM05D006744 ORTHO05D008730 7.6e-116 421.8 551 50.1
AT3G46780 Arabidopsis thaliana HOM05D006744 ORTHO05D008730 1.3e-115 421.0 536 49.3
Sed0004789 Sechium edule HOM05D006744 ORTHO05D008730 6.5e-115 418.7 568 49.3
Aa31LG4G15710 Aethionema arabicum HOM05D006744 ORTHO05D008730 8.4e-115 418.3 517 52.4
C01p33110 Brassica napus HOM05D006744 ORTHO05D008730 1.4e-114 417.5 540 50.6
BcaC09g49774 Brassica carinata HOM05D006744 ORTHO05D008730 1.9e-114 417.2 540 50.4
AL5G25790 Arabidopsis lyrata HOM05D006744 ORTHO05D008730 9.3e-114 414.8 522 50.8
SGA_v2.0_scaffold20G09292 Striga asiatica HOM05D006744 ORTHO05D008730 9.3e-114 414.8 537 53.1
Haze_24171 Corylus avellana HOM05D006744 ORTHO05D008730 2.7e-113 413.3 507 54.8
ClCG02G019880 Citrullus lanatus HOM05D006744 ORTHO05D008730 4.6e-113 412.5 587 49.9
Ciclev10030042m.g Citrus clementina HOM05D006744 ORTHO05D008730 4.6e-113 412.5 555 51.4
Hund04920 Selenicereus undatus HOM05D006744 ORTHO05D008730 3.3e-111 406.4 527 49.9
Sp5g14930 Schrenkiella parvula HOM05D006744 ORTHO05D008730 5.7e-111 405.6 603 46.4
Medtr4g064750 Medicago truncatula HOM05D006744 ORTHO05D008730 5.3e-109 399.1 558 49.1
ATR0559G062 Amborella trichopoda HOM05D006744 ORTHO05D008730 4.5e-108 396.0 533 48.4
CDE02G4503 Ceratophyllum demersum HOM05D006744 ORTHO05D008730 5.9e-108 395.6 501 48.3
COL.COLO4_18579 Corchorus olitorius HOM05D006744 ORTHO05D008730 1.4e-106 391.0 562 49.1
Cpa.g.sc81.95 Carica papaya HOM05D006744 ORTHO05D008730 3.2e-106 389.8 440 54.5
Nitab4.5_0000102g0310 Nicotiana tabacum HOM05D006744 ORTHO05D008730 7.2e-106 388.7 528 50.8
Dinv17049 Davidia involucrata HOM05D006744 ORTHO05D008730 1.0e-104 384.8 526 50.6
Dinv42993 Davidia involucrata HOM05D006744 ORTHO05D008730 1.0e-104 384.8 526 50.6
Dinv43104 Davidia involucrata HOM05D006744 ORTHO05D008730 1.0e-104 384.8 526 50.6
Aqoxy2G02327 Aquilegia oxysepala HOM05D006744 ORTHO05D008730 3.9e-104 382.9 529 49.1
unitig_746.g26716 Utricularia gibba HOM05D006744 ORTHO05D008730 1.1e-103 381.3 515 50.5
Os05g0291700 Oryza sativa ssp. japonica HOM05D006744 ORTHO05D008730 5.3e-101 372.5 530 48.3
GSVIVG01024905001 Vitis vinifera HOM05D006744 ORTHO05D008730 2.0e-100 370.5 373 60.3
CDE09G0068 Ceratophyllum demersum HOM05D006744 ORTHO05D008730 8.5e-99 365.2 516 46.9
Dinv34288 Davidia involucrata HOM05D006744 ORTHO05D008730 1.9e-98 364.0 322 66.5
Actinidia08543 Actinidia chinensis HOM05D006744 ORTHO05D008730 1.3e-94 351.3 536 49.6
HPP92_012610 Vanilla planifolia HOM05D006744 ORTHO05D008730 5.0e-91 339.3 491 47.3
Sc21g0006010 Simmondsia chinensis HOM05D006744 ORTHO05D008730 6.7e-88 328.9 328 57.0
Zm00001eb346280 Zea mays HOM05D006744 ORTHO05D008730 4.4e-87 326.2 544 46.1
Actinidia33767 Actinidia chinensis HOM05D006744 ORTHO05D008730 8.0e-81 305.4 250 68.4
CARHR154880 Cardamine hirsuta HOM05D006744 ORTHO05D008730 7.5e-79 298.9 279 60.2
Nitab4.5_0004892g0030 Nicotiana tabacum HOM05D006744 ORTHO05D010418 1.0e-75 288.5 523 43.4
Duzib170G1039 Durio zibethinus HOM05D006744 ORTHO05D008730 8.0e-73 278.9 281 56.2
SEGI_15287 Sequoiadendron giganteum HOM05D006744 ORTHO05D008730 1.1e-66 258.5 453 41.5
Mapoly0154s0018 Marchantia polymorpha HOM05D006744 ORTHO05D008730 7.3e-58 229.2 259 50.6
AagrBONN_evm.TU.Sc2ySwM_117.3415 Anthoceros agrestis HOM05D006744 ORTHO05D008730 3.0e-51 207.2 275 45.1
Pp3c1_14800 Physcomitrium patens HOM05D006744 ORTHO05D008730 1.2e-49 201.8 481 34.9
CBR_g39489 Chara braunii HOM05D006744 ORTHO05D008730 2.4e-37 161.0 496 30.8
SMO145G0221 Selaginella moellendorffii HOM05D006744 ORTHO05D008730 6.0e-36 156.4 196 44.4
Actinidia01965 Actinidia chinensis HOM05D006744 ORTHO05D008730 3.2e-21 107.5 93 65.6
CAN.G624.26 Capsicum annuum HOM05D006744 ORTHO05D008730 1.9e-18 98.2 81 64.2
CAN.G84.41 Capsicum annuum HOM05D002560 ORTHO05D000293 1.3e-17 95.5 93 55.9
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 1.1e-13 82.4 90 55.6
CAN.G399.7 Capsicum annuum HOM05D006744 ORTHO05D008730 1.4e-13 82.0 74 63.5
Cre06.g269050 Chlamydomonas reinhardtii HOM05D005785 ORTHO05D007962 3.2e-13 80.9 265 27.9
Potri.009G111323 Populus trichocarpa HOM05D005785 ORTHO05D007962 2.1e-12 78.2 289 28.7
Potri.T124404 Populus trichocarpa HOM05D005785 ORTHO05D007962 2.1e-12 78.2 289 28.7
CBR_g23485 Chara braunii HOM05D005785 ORTHO05D007962 3.5e-12 77.4 201 30.8
TPR.G28051 Trifolium pratense HOM05D005785 ORTHO05D007962 1.8e-11 75.1 262 27.9
Sabra09G0085100 Salix brachista HOM05D005785 ORTHO05D007962 2.3e-11 74.7 289 28.7
SMO146G0207 Selaginella moellendorffii HOM05D005785 ORTHO05D007962 2.3e-11 74.7 264 26.1
Manes.15G147600 Manihot esculenta HOM05D005785 ORTHO05D007962 3.9e-11 73.9 327 28.1
Potri.004G150300 Populus trichocarpa HOM05D005785 ORTHO05D007962 3.9e-11 73.9 283 28.3
Prupe.8G106300 Prunus persica HOM05D005785 ORTHO05D007962 5.1e-11 73.6 260 28.5
Hma1.2p1_0615F.1_g189650 Hydrangea macrophylla HOM05D006744 ORTHO05D008730 1.5e-10 72.0 164 38.4
MD10G1083200 Malus domestica HOM05D005785 ORTHO05D007962 1.5e-10 72.0 262 28.2
VMungo1127G1831 Vigna mungo HOM05D005785 ORTHO05D007962 1.5e-10 72.0 264 27.3
PGSC0003DMG400008269 Solanum tuberosum HOM05D005785 ORTHO05D007962 1.9e-10 71.6 264 28.0
CSS0035207 Camellia sinensis var. sinensis HOM05D005785 ORTHO05D007962 3.3e-10 70.9 264 28.8
Ca_20841_v3 Cicer arietinum L. HOM05D005785 ORTHO05D007962 4.3e-10 70.5 363 25.9
Haze_02424 Corylus avellana HOM05D005785 ORTHO05D007962 5.6e-10 70.1 264 28.0
Aqoxy6G00992 Aquilegia oxysepala HOM05D005785 ORTHO05D007962 9.6e-10 69.3 268 29.1
Lj3g0001588 Lotus japonicus HOM05D005785 ORTHO05D007962 9.6e-10 69.3 262 27.1
Lalb_Chr03g0025851 Lupinus albus HOM05D005785 ORTHO05D007962 1.3e-09 68.9 264 27.3
Nn5g29471 Nelumbo nucifera HOM05D005785 ORTHO05D007962 1.3e-09 68.9 264 27.3
Pp3c10_3330 Physcomitrium patens HOM05D005785 ORTHO05D000513 1.3e-09 68.9 257 27.6
Duzib132G1036 Durio zibethinus HOM05D005785 ORTHO05D007962 1.6e-09 68.6 260 29.2
CSS0030803 Camellia sinensis var. sinensis HOM05D005785 ORTHO05D007962 2.8e-09 67.8 264 28.4
Thecc.02G121200 Theobroma cacao HOM05D005785 ORTHO05D007962 2.8e-09 67.8 390 27.4
Hma1.2p1_2724F.1_g327500 Hydrangea macrophylla HOM05D005785 ORTHO05D007962 4.8e-09 67.0 260 27.7
Glyma.11G121100 Glycine max HOM05D005785 ORTHO05D007962 6.2e-09 66.6 262 26.7
CAN.G1.48 Capsicum annuum HOM05D005785 ORTHO05D007962 8.1e-09 66.2 264 27.3
THA.LOC104800353 Tarenaya hassleriana HOM05D005785 ORTHO05D007962 1.1e-08 65.9 300 26.3
SEGI_40956 Sequoiadendron giganteum HOM05D005785 ORTHO05D007962 1.8e-08 65.1 348 25.6
Aa31LG8G5730 Aethionema arabicum HOM05D005785 ORTHO05D007962 2.4e-08 64.7 262 26.0
CiPaw.06G138100 Carya illinoinensis HOM05D005785 ORTHO05D007962 2.4e-08 64.7 264 26.9
Nn5g31359 Nelumbo nucifera HOM05D005785 ORTHO05D007962 3.1e-08 64.3 337 26.1
PSO675G5886 Papaver somniferum HOM05D005785 ORTHO05D007962 4.0e-08 63.9 329 26.7
AT3G18890 Arabidopsis thaliana HOM05D005785 ORTHO05D007962 9.0e-08 62.8 262 26.0
BcaB06g25943 Brassica carinata HOM05D005785 ORTHO05D007962 9.0e-08 62.8 259 25.1
QL11p040109 Quercus lobata HOM05D005785 ORTHO05D007962 9.0e-08 62.8 393 25.7
unitig_0.g71 Utricularia gibba HOM05D005785 ORTHO05D007962 9.0e-08 62.8 285 26.3
GSVIVG01031907001 Vitis vinifera HOM05D005785 ORTHO05D007962 9.0e-08 62.8 264 27.3
Carub.0003s1872 Capsella rubella HOM05D005785 ORTHO05D007962 1.2e-07 62.4 262 26.0
Migut.B00273 Erythranthe guttata HOM05D005785 ORTHO05D007962 1.2e-07 62.4 424 23.1
HanXRQChr16g0505051 Helianthus annuus HOM05D005785 ORTHO05D007962 1.2e-07 62.4 262 27.5
Sp3g16990 Schrenkiella parvula HOM05D005785 ORTHO05D007962 1.2e-07 62.4 261 26.1
Zm00001eb118450 Zea mays HOM05D005785 ORTHO05D007962 1.5e-07 62.0 309 28.2
arahy.Tifrunner.gnm1.ann1.T05FEK Arachis hypogaea HOM05D005785 ORTHO05D007962 2.0e-07 61.6 335 24.8
A05p30660 Brassica napus HOM05D005785 ORTHO05D007962 2.6e-07 61.2 262 26.3
BraA05t21908Z Brassica rapa HOM05D005785 ORTHO05D007962 2.6e-07 61.2 262 26.3
ECA236G5032 Erigeron canadensis HOM05D005785 ORTHO05D007962 2.6e-07 61.2 263 26.2
Medtr4g068970 Medicago truncatula HOM05D005785 ORTHO05D007962 2.6e-07 61.2 435 23.7
C05p46540 Brassica napus HOM05D005785 ORTHO05D007962 3.4e-07 60.8 262 26.0
Dinv25495 Davidia involucrata HOM05D006744 ORTHO05D008730 3.4e-07 60.8 79 50.6
Sed0026918 Sechium edule HOM05D005785 ORTHO05D007962 3.4e-07 60.8 312 26.0
SGA_v2.0_scaffold58G20578 Striga asiatica HOM05D005785 ORTHO05D007962 3.4e-07 60.8 97 39.2
FvH4_2g07870 Fragaria vesca HOM05D005785 ORTHO05D007962 5.8e-07 60.1 369 23.8
CANSAT80G1909 Cannabis sativa HOM05D005785 ORTHO05D007962 7.6e-07 59.7 334 24.6
SalBow6G0785 Salvia bowleyana HOM05D005785 ORTHO05D007962 7.6e-07 59.7 312 26.0
ATR0733G035 Amborella trichopoda HOM05D005785 ORTHO05D007962 9.9e-07 59.3 390 25.1
Glyma.12G046200 Glycine max HOM05D005785 ORTHO05D007962 9.9e-07 59.3 388 23.5
Cc02_g17970 Coffea canephora HOM05D005785 ORTHO05D007962 1.7e-06 58.5 349 24.9
Peaxi162Scf00003g01433 Petunia axillaris HOM05D005785 ORTHO05D007962 1.7e-06 58.5 390 25.4
Aa31LG10G6920 Aethionema arabicum HOM05D005455 ORTHO05D007017 2.2e-06 58.2 256 26.6
BolC4t27845H Brassica oleracea HOM05D005455 ORTHO05D007017 2.2e-06 58.2 271 25.5
Ciclev10016957m.g Citrus clementina HOM05D006744 ORTHO05D008730 2.2e-06 58.2 120 44.2
Os10g0100300 Oryza sativa ssp. japonica HOM05D005785 ORTHO05D007962 3.8e-06 57.4 309 28.2
Atru.chr5.2923 Acer truncatum HOM05D005785 ORTHO05D007962 6.4e-06 56.6 347 23.9
MELO3C018409.2 Cucumis melo HOM05D005785 ORTHO05D007962 6.4e-06 56.6 298 25.5
Phvul.011G048000 Phaseolus vulgaris HOM05D005785 ORTHO05D007962 6.4e-06 56.6 423 23.2
TAR628G1306 Trochodendron aralioides HOM05D005785 ORTHO05D007962 6.4e-06 56.6 425 24.0
AagrBONN_evm.TU.Sc2ySwM_344.5105 Anthoceros agrestis HOM05D005455 ORTHO05D007017 8.4e-06 56.2 250 25.2


User provided reference genes

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