Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 1.6e-67 259.2 128 100.0
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 2.3e-61 238.8 127 92.1
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 1.6e-43 179.5 97 91.8
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 7.7e-25 117.5 65 89.2
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 4.4e-20 101.7 158 39.9
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 9.7e-20 100.5 168 41.1
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 3.1e-18 95.5 168 38.7
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 3.1e-18 95.5 168 38.7
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 4.1e-18 95.1 168 38.7
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 5.3e-18 94.7 142 40.8
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 7.0e-18 94.4 168 38.1
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 7.0e-18 94.4 168 38.1
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.6e-17 93.2 142 39.4
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 3.5e-17 92.0 168 37.5
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 3.5e-17 92.0 168 36.9
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 5.9e-17 91.3 168 37.5
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 5.9e-17 91.3 164 37.8
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 7.7e-17 90.9 168 36.3
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 7.7e-17 90.9 168 36.9
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 7.7e-17 90.9 168 36.9
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 7.7e-17 90.9 170 35.3
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 7.7e-17 90.9 168 36.9
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 1.0e-16 90.5 168 36.9
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 1.3e-16 90.1 168 36.3
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 1.3e-16 90.1 168 36.3
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 1.3e-16 90.1 168 36.3
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.3e-16 90.1 168 36.3
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.3e-16 90.1 168 36.3
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 1.3e-16 90.1 168 36.3
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 1.3e-16 90.1 168 36.3
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 1.7e-16 89.7 168 36.9
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 1.7e-16 89.7 168 35.7
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.7e-16 89.7 168 36.3
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.7e-16 89.7 168 36.3
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 1.7e-16 89.7 168 36.3
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 1.7e-16 89.7 177 36.2
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 2.2e-16 89.4 169 34.9
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 2.2e-16 89.4 168 35.7
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 2.2e-16 89.4 168 36.3
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 2.9e-16 89.0 168 35.7
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 2.9e-16 89.0 168 35.7
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 2.9e-16 89.0 168 35.7
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 2.9e-16 89.0 168 35.7
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 2.9e-16 89.0 168 36.3
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 3.8e-16 88.6 168 35.1
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 5.0e-16 88.2 168 36.3
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 5.0e-16 88.2 168 35.7
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 5.0e-16 88.2 168 36.3
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 5.0e-16 88.2 168 35.7
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 5.0e-16 88.2 168 35.7
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 5.0e-16 88.2 168 35.7
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 5.0e-16 88.2 168 35.1
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 6.5e-16 87.8 186 33.3
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 6.5e-16 87.8 165 37.0
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 6.5e-16 87.8 168 35.1
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 6.5e-16 87.8 168 35.7
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 8.5e-16 87.4 168 35.1
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 8.5e-16 87.4 168 35.1
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 8.5e-16 87.4 168 35.1
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 8.5e-16 87.4 168 35.7
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 8.5e-16 87.4 168 35.1
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 1.1e-15 87.0 168 35.1
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.1e-15 87.0 175 34.9
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 1.1e-15 87.0 168 35.1
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.5e-15 86.7 168 35.7
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 1.5e-15 86.7 168 35.1
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 1.5e-15 86.7 168 34.5
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.9e-15 86.3 168 35.7
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 1.9e-15 86.3 168 35.1
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 2.5e-15 85.9 168 35.1
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 2.5e-15 85.9 168 35.1
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 2.5e-15 85.9 168 34.5
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.5e-15 85.9 168 34.5
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.5e-15 85.9 168 34.5
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 2.5e-15 85.9 168 35.1
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 3.2e-15 85.5 170 34.1
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 3.2e-15 85.5 168 34.5
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 3.2e-15 85.5 168 35.1
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 4.2e-15 85.1 168 34.5
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 4.2e-15 85.1 163 36.8
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 5.5e-15 84.7 168 34.5
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 5.5e-15 84.7 50 82.0
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 7.2e-15 84.3 168 33.9
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 7.2e-15 84.3 172 36.0
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 9.4e-15 84.0 168 35.1
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 9.4e-15 84.0 168 35.1
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 9.4e-15 84.0 168 34.5
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 1.2e-14 83.6 168 33.9
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 1.2e-14 83.6 164 34.1
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 1.6e-14 83.2 168 36.3
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 2.1e-14 82.8 168 33.9
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 4.7e-14 81.6 168 33.9
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 6.1e-14 81.3 168 33.3
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 6.1e-14 81.3 168 34.5
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.0e-13 80.5 164 34.8
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 1.0e-13 80.5 168 33.3
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 1.8e-13 79.7 168 33.3
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.8e-13 79.7 168 33.9
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 2.3e-13 79.3 59 64.4
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 4.0e-13 78.6 168 33.3
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 5.2e-13 78.2 41 85.4
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 1.2e-12 77.0 42 83.3
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.5e-12 76.6 168 33.9
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 1.5e-12 76.6 168 33.9
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 1.5e-12 76.6 168 32.1
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 7.5e-12 74.3 41 82.9
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.7e-11 73.2 42 83.3
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 4.8e-11 71.6 41 80.5
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 6.3e-11 71.2 42 78.6
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 1.8e-10 69.7 68 48.5
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 4.1e-10 68.6 164 29.9
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 5.4e-10 68.2 41 75.6
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 9.1e-10 67.4 57 56.1
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 1.6e-09 66.6 41 73.2
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.0e-09 66.2 168 30.4
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.3e-08 63.5 41 65.9
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 5.0e-08 61.6 41 65.9
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 8.5e-08 60.8 32 84.4
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 9.4e-07 57.4 33 78.8
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.2e-06 57.0 44 63.6
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.6e-06 56.6 32 81.2
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 4.7e-06 55.1 36 72.2


User provided reference genes

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