Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 1.3e-237 826.6 598 100.0
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 4.5e-230 801.6 598 98.8
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 9.6e-164 581.3 667 79.6
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 5.3e-146 522.3 703 72.7
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 2.9e-144 516.5 640 78.3
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 5.9e-137 492.3 683 71.9
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 2.9e-136 490.0 678 72.1
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 1.8e-133 480.7 691 70.5
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 2.3e-133 480.3 678 70.6
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.5e-132 477.6 656 72.3
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 3.3e-132 476.5 657 72.1
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 4.8e-131 472.6 699 51.6
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 3.1e-130 469.9 645 72.9
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.6e-126 457.6 683 71.4
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 2.1e-126 457.2 691 69.8
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 1.8e-125 454.1 689 68.8
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.8e-125 454.1 679 69.4
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 2.3e-125 453.8 683 69.8
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 3.0e-125 453.4 663 70.9
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 6.8e-125 452.2 683 71.2
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 1.2e-124 451.4 672 70.4
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 1.2e-124 451.4 681 70.5
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.3e-123 448.0 669 69.7
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 1.7e-123 447.6 676 69.2
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 4.8e-123 446.0 684 70.0
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 8.3e-123 445.3 676 69.5
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 8.3e-123 445.3 664 65.1
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 8.3e-123 445.3 683 70.9
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 1.8e-122 444.1 689 59.8
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 4.1e-122 443.0 651 71.3
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 9.1e-122 441.8 671 69.0
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 1.6e-121 441.0 687 69.1
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 2.0e-121 440.7 650 71.1
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 5.9e-121 439.1 648 71.5
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 1.0e-117 428.3 682 68.6
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 4.0e-117 426.4 625 72.8
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 8.8e-117 425.2 685 58.7
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 1.2e-116 424.9 596 73.8
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 4.4e-116 422.9 632 72.5
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 7.5e-116 422.2 652 69.8
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 9.8e-116 421.8 685 58.7
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 1.7e-115 421.0 632 72.3
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 2.8e-115 420.2 805 44.7
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 2.8e-115 420.2 507 71.4
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 6.3e-115 419.1 637 71.0
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 8.3e-115 418.7 627 71.6
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 3.1e-114 416.8 675 53.5
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.1e-114 416.4 671 69.2
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 1.6e-113 414.5 643 70.6
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 1.6e-113 414.5 671 69.2
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 1.6e-113 414.5 659 69.2
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 2.7e-113 413.7 644 70.3
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 2.7e-113 413.7 600 72.8
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 2.7e-113 413.7 652 68.9
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 2.7e-113 413.7 651 69.7
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 1.7e-112 411.0 680 68.7
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 2.9e-112 410.2 680 68.2
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 3.8e-112 409.8 681 68.1
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.1e-111 408.3 652 68.6
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 1.6e-110 404.4 651 67.9
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 2.8e-110 403.7 669 68.0
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 1.4e-109 401.4 601 72.9
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 2.3e-109 400.6 778 53.2
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 2.3e-109 400.6 641 70.2
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 3.0e-109 400.2 666 68.6
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 2.0e-108 397.5 631 70.5
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 2.6e-108 397.1 641 69.3
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 2.6e-108 397.1 662 67.2
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 3.4e-108 396.7 651 68.8
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-106 391.7 719 52.4
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 1.1e-106 391.7 526 79.3
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 2.4e-106 390.6 604 72.7
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 2.4e-106 390.6 824 45.1
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 1.2e-105 388.3 609 71.6
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 2.7e-105 387.1 619 71.7
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 2.7e-105 387.1 651 68.8
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 5.9e-105 386.0 627 69.5
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 7.8e-105 385.6 669 57.1
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 1.3e-104 384.8 638 69.6
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 1.7e-104 384.4 672 66.8
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 2.9e-104 383.6 629 69.8
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 8.6e-104 382.1 608 71.5
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 7.3e-103 379.0 652 66.0
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 2.8e-102 377.1 608 70.9
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 2.8e-102 377.1 676 49.6
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 6.1e-102 375.9 644 58.5
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 6.1e-102 375.9 595 71.9
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 1.4e-101 374.8 633 69.7
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 2.0e-100 370.9 531 77.0
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.2e-99 367.5 661 61.1
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 6.4e-99 365.9 672 40.0
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 1.2e-97 361.7 652 66.3
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 1.2e-97 361.7 489 77.3
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 4.3e-95 353.2 490 78.8
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 2.3e-93 347.4 630 67.9
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 2.3e-93 347.4 626 68.2
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 3.1e-93 347.1 626 67.7
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 1.2e-92 345.1 628 67.4
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 3.4e-92 343.6 637 66.9
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 4.9e-91 339.7 590 70.0
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 2.7e-89 334.0 684 43.6
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 1.9e-87 327.8 675 64.4
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 4.7e-78 296.6 375 77.1
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 8.9e-77 292.4 559 68.7
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 3.5e-73 280.4 576 66.0
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 3.5e-73 280.4 601 62.6
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 6.2e-70 269.6 419 47.3
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 5.8e-68 263.1 428 77.3
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 8.4e-67 259.2 546 53.3
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 1.6e-65 255.0 151 85.4
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 4.3e-63 246.9 447 74.5
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 7.3e-63 246.1 612 61.4
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 6.2e-62 243.0 318 50.0
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 7.6e-60 236.1 356 46.3
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.9e-57 226.1 427 74.5
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 1.0e-56 225.7 321 49.2
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.0e-56 224.2 423 75.2
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 3.9e-56 223.8 593 60.7
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 7.4e-55 219.5 577 60.8
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 1.3e-54 218.8 154 70.8
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.1e-54 216.1 423 68.8
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.4e-50 205.3 127 76.4
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 1.2e-49 202.2 220 56.4
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 3.3e-47 194.1 542 38.6
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 2.1e-46 191.4 356 40.7
DCAR_031833 Daucus carota HOM05D003406 ORTHO05D004026 4.8e-46 190.3 282 49.3
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.6e-44 184.5 337 41.8
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 1.1e-39 169.1 116 71.6
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 2.4e-37 161.4 381 32.3
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 1.7e-35 155.2 365 45.8
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 1.6e-33 148.7 97 75.3
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 6.1e-33 146.7 78 87.2
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 3.9e-32 144.1 79 84.8
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.8e-32 142.9 132 56.8
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 4.3e-31 140.6 383 73.6
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 7.4e-31 139.8 386 73.3
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 1.2e-28 132.5 225 42.7
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 2.9e-27 127.9 420 55.2
PGSC0003DMG400023151 Solanum tuberosum HOM05D003406 ORTHO05D004026 1.1e-26 125.9 281 42.0
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 7.2e-26 123.2 134 49.3
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.2e-26 123.2 133 48.1
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 4.7e-25 120.6 140 47.9
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.3e-24 118.2 134 47.8
PSO782G3453 Papaver somniferum HOM05D003406 ORTHO05D004026 2.0e-23 115.2 223 42.6
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.7e-23 113.6 133 44.4
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 7.4e-23 113.2 88 58.0
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 9.7e-23 112.8 389 31.6
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.8e-22 111.3 133 42.9
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 1.4e-21 109.0 133 42.1
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 1.4e-21 109.0 133 42.1
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 1.2e-20 105.9 429 39.9
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 1.0e-19 102.8 92 56.5
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 5.5e-18 97.1 53 73.6
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 9.4e-18 96.3 62 69.4
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 2.7e-17 94.7 96 50.0
BcaC05g28071 Brassica carinata HOM05D003406 ORTHO05D004026 8.0e-17 93.2 56 80.4
Hma1.2p1_1396F.1_g280660 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 1.5e-15 89.0 121 51.2
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 9.7e-15 86.3 164 31.1
C07p49630 Brassica napus HOM05D003406 ORTHO05D004026 1.3e-14 85.9 92 53.3
PSO561G0005 Papaver somniferum HOM05D003406 ORTHO05D004026 1.3e-14 85.9 198 38.4
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.3e-14 85.9 140 46.4
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 2.8e-14 84.7 47 87.2
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 2.8e-14 84.7 47 87.2
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 4.8e-14 84.0 159 44.7
TPR.G20465 Trifolium pratense HOM05D003406 ORTHO05D004026 4.1e-13 80.9 52 76.9
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-11 76.3 54 61.1
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-11 76.3 54 61.1
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-11 76.3 54 61.1
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-11 76.3 54 61.1
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-11 76.3 54 61.1
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-11 76.3 54 61.1
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-11 76.3 54 61.1
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.2e-11 75.1 54 59.3
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.0e-11 73.9 80 58.8
Gohir.D10G058700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 6.5e-11 73.6 49 77.6
Gorai.011G062800 Gossypium raimondii HOM05D003406 ORTHO05D004026 2.5e-10 71.6 61 65.6
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.2e-10 71.2 80 57.5
Actinidia10171 Actinidia chinensis HOM05D003406 ORTHO05D004026 8.0e-09 66.6 121 43.0
C05p40950 Brassica napus HOM05D003406 ORTHO05D004026 2.6e-07 61.6 39 71.8
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.3e-06 59.3 37 67.6
Actinidia10170 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.8e-06 58.2 68 57.4
DCAR_025391 Daucus carota HOM05D003406 ORTHO05D004026 3.7e-06 57.8 47 63.8
Prupe.2G034000 Prunus persica HOM05D003614 ORTHO05D004156 3.7e-06 57.8 34 85.3
Gohir.D04G052700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 4.8e-06 57.4 34 82.4
Gorai.012G058900 Gossypium raimondii HOM05D003406 ORTHO05D004026 4.8e-06 57.4 34 82.4


User provided reference genes

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