Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 2424.8 1201 100.0
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1963.7 1184 82.1
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1932.1 1174 81.2
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1770.7 1208 72.1
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1742.2 1199 71.1
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1738.4 1209 70.8
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1734.5 1208 69.9
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1733.4 1203 71.3
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1731.5 1195 70.2
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1696.4 1197 68.9
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1688.7 1186 69.1
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1683.3 1194 68.8
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1680.2 1172 70.1
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1678.3 1195 68.3
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1672.9 1199 68.1
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1669.1 1207 67.9
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1666.7 1196 68.4
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1665.2 1195 67.4
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1659.4 1198 68.0
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1658.3 1196 67.7
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1657.9 1202 67.5
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1657.1 1189 68.0
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1656.3 1197 68.4
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1653.3 1198 67.8
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1651.3 1237 66.9
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1647.9 1197 67.6
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1645.6 1196 67.3
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1641.7 1195 67.2
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1640.6 1178 66.6
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1639.8 1195 67.4
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1636.7 1200 67.1
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1636.7 1196 67.1
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1633.2 1200 66.8
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1632.8 1201 65.9
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1627.5 1205 65.7
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1626.7 1195 66.3
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1624.4 1197 65.3
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1619.0 1194 65.6
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1616.7 1198 65.9
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1613.6 1203 65.8
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1613.6 1194 65.4
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1610.5 1197 65.9
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1609.3 1200 66.0
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1607.4 1194 66.1
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1606.7 1194 66.1
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1605.1 1195 65.4
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1602.4 1199 64.7
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1601.3 1190 65.8
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1598.2 1218 64.8
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1595.1 1195 65.3
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1594.7 1196 64.8
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1592.4 1222 64.1
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1592.0 1188 65.5
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1589.7 1197 65.8
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1587.8 1196 65.2
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1586.6 1197 65.7
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1585.1 1197 65.6
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1583.5 1155 66.7
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1579.7 1279 61.7
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1577.0 1183 65.8
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1576.2 1195 63.8
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1572.8 1205 63.1
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1569.3 1319 60.4
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1568.5 1199 63.7
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1563.1 1195 65.0
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1553.9 1193 63.6
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1552.3 1190 63.4
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1546.2 1239 61.3
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1546.2 1137 65.3
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1545.0 1211 61.4
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1542.7 1194 63.3
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1540.4 1217 61.7
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1539.2 1186 63.7
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1539.2 1190 62.7
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1536.5 1197 63.9
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1535.0 1192 62.9
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1535.0 1188 62.5
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1531.5 1190 63.5
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1527.3 1196 62.9
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1525.8 1196 62.5
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1525.8 1186 63.1
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1524.2 1210 62.3
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1523.8 1187 62.8
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1521.1 1190 63.1
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1509.6 1255 59.8
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1499.6 1180 61.9
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1479.2 1287 58.7
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1469.5 1188 59.8
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1467.6 1186 61.6
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1467.2 1001 70.8
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1461.8 1023 70.4
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1461.0 1230 58.9
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1424.5 1190 58.8
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1406.7 1179 58.4
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1396.7 1205 57.5
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1385.5 988 69.6
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1385.2 971 70.5
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1335.1 1193 57.8
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1241.1 1193 55.2
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1241.1 1202 52.4
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1241.1 1184 52.4
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1224.2 1197 55.1
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1178.7 1217 50.4
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1166.0 1210 51.7
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1161.4 1172 50.0
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1109.0 837 64.9
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.3e-296 1023.5 867 60.8
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 1.0e-283 980.7 761 62.3
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 6.1e-281 971.5 718 67.1
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 1.6e-265 920.2 713 64.8
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 2.3e-264 916.4 1083 45.2
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.2e-247 860.9 1184 43.9
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 9.8e-247 857.8 1099 43.0
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 1.5e-223 780.8 583 65.0
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 2.4e-213 746.9 489 73.0
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 2.1e-209 733.8 564 67.0
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 1.8e-208 730.7 755 52.2
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.0e-203 714.9 496 70.6
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.0e-150 538.9 387 68.7
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 2.0e-138 498.0 407 61.4
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 3.1e-128 464.2 720 40.0
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 9.1e-128 462.6 587 46.7
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 6.6e-94 350.1 259 63.7
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 2.0e-82 312.0 376 44.4
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 1.0e-65 256.5 274 50.7
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 1.6e-63 249.2 175 70.3
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 5.1e-62 244.2 303 43.6
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 5.7e-61 240.7 202 60.9
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 7.6e-58 230.3 307 41.4
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 3.6e-47 194.9 235 47.7
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 7.2e-40 170.6 140 60.7
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 1.0e-25 123.6 156 42.9
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 1.7e-25 122.9 150 47.3
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 3.4e-21 108.6 72 65.3
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 1.6e-15 89.7 203 33.0
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 8.3e-12 77.4 128 34.4
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 1.4e-11 76.6 64 59.4
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 1.8e-11 76.3 75 50.7
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 5.4e-11 74.7 53 62.3
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 5.9e-10 71.2 65 55.4
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 2.9e-09 68.9 47 70.2
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 1.5e-08 66.6 93 46.2
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 1.2e-07 63.5 58 58.6
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 5.2e-06 58.2 45 60.0
CDE12G0049 Ceratophyllum demersum HOM05D005254 ORTHO05D130362 6.8e-06 57.8 49 49.0


User provided reference genes

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