Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019874 Vanilla planifolia HOM05D058214 ORTHO05D003935 2.3e-117 426.0 294 100.0
HPP92_019882 Vanilla planifolia HOM05D003809 ORTHO05D003935 1.1e-58 231.1 170 75.9
HPP92_019883 Vanilla planifolia HOM05D058214 ORTHO05D428821 1.9e-50 203.8 98 99.0
AUR62001660 Chenopodium quinoa HOM05D000001 ORTHO05D000003 6.3e-14 82.4 134 39.6
ClCG10G022040 Citrullus lanatus HOM05D003809 ORTHO05D003935 5.3e-13 79.3 64 48.4
CsaV3_3G033890 Cucumis sativus L. HOM05D003809 ORTHO05D003935 5.3e-13 79.3 64 48.4
MELO3C009176.2 Cucumis melo HOM05D003809 ORTHO05D003935 7.0e-13 79.0 64 48.4
Actinidia20726 Actinidia chinensis HOM05D003809 ORTHO05D003935 1.2e-12 78.2 122 39.3
DCAR_015432 Daucus carota HOM05D003809 ORTHO05D003935 4.5e-12 76.3 108 38.0
Duzib128G0737 Durio zibethinus HOM05D003809 ORTHO05D003935 4.5e-12 76.3 97 38.1
TAR369G0780 Trochodendron aralioides HOM05D003809 ORTHO05D003935 4.5e-12 76.3 79 43.0
TAR369G1072 Trochodendron aralioides HOM05D003809 ORTHO05D003935 4.5e-12 76.3 79 43.0
Thecc.05G018100 Theobroma cacao HOM05D003809 ORTHO05D003935 5.9e-12 75.9 110 37.3
GSVIVG01033976001 Vitis vinifera HOM05D003809 ORTHO05D003935 5.9e-12 75.9 142 32.4
AT5G01260 Arabidopsis thaliana HOM05D003809 ORTHO05D003935 7.7e-12 75.5 143 37.1
Manes.08G091100 Manihot esculenta HOM05D003809 ORTHO05D003935 7.7e-12 75.5 57 54.4
COL.COLO4_14553 Corchorus olitorius HOM05D003809 ORTHO05D003935 1.0e-11 75.1 71 43.7
TAR623G0913 Trochodendron aralioides HOM05D003809 ORTHO05D003935 1.3e-11 74.7 68 44.1
TWI74G0880 Tripterygium wilfordii HOM05D003809 ORTHO05D003935 1.7e-11 74.3 64 43.8
Dinv03585 Davidia involucrata HOM05D003809 ORTHO05D003935 2.2e-11 73.9 110 40.0
Potri.016G114500 Populus trichocarpa HOM05D003809 ORTHO05D003935 2.2e-11 73.9 109 39.4
COL.COLO4_19141 Corchorus olitorius HOM05D000001 ORTHO05D000003 3.8e-11 73.2 131 35.1
CiPaw.09G207900 Carya illinoinensis HOM05D003809 ORTHO05D003935 5.0e-11 72.8 57 52.6
MD12G1164600 Malus domestica HOM05D003809 ORTHO05D003935 5.0e-11 72.8 115 34.8
RcHm_v2.0_Chr3g0463311 Rosa chinensis HOM05D003809 ORTHO05D003935 5.0e-11 72.8 109 40.4
Cpa.g.sc112.34 Carica papaya HOM05D003809 ORTHO05D003935 8.5e-11 72.0 151 32.5
Cpa.g.sc163.14 Carica papaya HOM05D003809 ORTHO05D003935 8.5e-11 72.0 103 35.0
Hma1.2p1_0362F.1_g136090 Hydrangea macrophylla HOM05D003809 ORTHO05D003935 8.5e-11 72.0 57 50.9
Manes.09G104500 Manihot esculenta HOM05D003809 ORTHO05D003935 8.5e-11 72.0 92 35.9
Nn2g13682 Nelumbo nucifera HOM05D003809 ORTHO05D003935 8.5e-11 72.0 111 32.4
Potri.006G099200 Populus trichocarpa HOM05D003809 ORTHO05D003935 1.1e-10 71.6 109 41.3
Prupe.6G275300 Prunus persica HOM05D003809 ORTHO05D003935 1.1e-10 71.6 106 39.6
Ciclev10011409m.g Citrus clementina HOM05D003809 ORTHO05D003935 1.5e-10 71.2 101 36.6
Oeu055170.1 Olea europaea HOM05D003809 ORTHO05D003935 1.9e-10 70.9 109 35.8
Atru.chr8.2220 Acer truncatum HOM05D003809 ORTHO05D003935 2.5e-10 70.5 56 50.0
Carub.0006s0062 Capsella rubella HOM05D003809 ORTHO05D003935 2.5e-10 70.5 57 49.1
Cfa017221 Carpinus fangiana HOM05D003809 ORTHO05D003935 2.5e-10 70.5 97 35.1
Cfa017222 Carpinus fangiana HOM05D003809 ORTHO05D003935 2.5e-10 70.5 97 35.1
Dinv14451 Davidia involucrata HOM05D003809 ORTHO05D003935 2.5e-10 70.5 57 47.4
Gohir.D11G348800 Gossypium hirsutum HOM05D003809 ORTHO05D003935 2.5e-10 70.5 113 38.1
Gorai.007G379100 Gossypium raimondii HOM05D003809 ORTHO05D003935 2.5e-10 70.5 113 38.1
HanXRQChr01g0007011 Helianthus annuus HOM05D003809 ORTHO05D003935 2.5e-10 70.5 117 34.2
PSO339G2972 Papaver somniferum HOM05D003809 ORTHO05D003935 2.5e-10 70.5 85 37.6
AL6G10910 Arabidopsis lyrata HOM05D003809 ORTHO05D003935 3.2e-10 70.1 57 49.1
BraA03t09429Z Brassica rapa HOM05D003809 ORTHO05D003935 3.2e-10 70.1 57 49.1
Nn2g11447 Nelumbo nucifera HOM05D003809 ORTHO05D003935 3.2e-10 70.1 92 37.0
Aqoxy4G02610 Aquilegia oxysepala HOM05D003809 ORTHO05D003935 4.2e-10 69.7 57 49.1
FAN05G1413 Fragaria x ananassa HOM05D003809 ORTHO05D003935 5.5e-10 69.3 110 40.0
PGR004G1101 Punica granatum HOM05D003809 ORTHO05D003935 7.2e-10 68.9 56 48.2
SEGI_38034 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 7.2e-10 68.9 114 36.0
Solyc09g014400.3 Solanum lycopersicum HOM05D003809 ORTHO05D003935 7.2e-10 68.9 157 31.2
vmacro08854 Vaccinium macrocarpon HOM05D003809 ORTHO05D003935 7.2e-10 68.9 59 45.8
FAN09G2283 Fragaria x ananassa HOM05D003809 ORTHO05D003935 9.4e-10 68.6 109 39.4
MD04G1150500 Malus domestica HOM05D003809 ORTHO05D003935 9.4e-10 68.6 115 36.5
CANSAT35G1529 Cannabis sativa HOM05D003809 ORTHO05D003935 1.2e-09 68.2 101 34.7
Gohir.A11G329600 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.2e-09 68.2 100 40.0
Lj2A76T85 Lonicera japonica HOM05D003809 ORTHO05D003935 1.2e-09 68.2 143 35.0
Sed0014073 Sechium edule HOM05D003809 ORTHO05D003935 1.2e-09 68.2 64 39.1
CSS0024242 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 1.6e-09 67.8 64 42.2
Dinv28631 Davidia involucrata HOM05D003809 ORTHO05D003935 1.6e-09 67.8 105 37.1
FAN02G0645 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.6e-09 67.8 104 40.4
Gohir.A09G164500 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.6e-09 67.8 101 37.6
Sed0009856 Sechium edule HOM05D003809 ORTHO05D003935 1.6e-09 67.8 56 46.4
VMungo0331G1847 Vigna mungo HOM05D003809 ORTHO05D003935 1.6e-09 67.8 57 47.4
Aa31LG1G22880 Aethionema arabicum HOM05D003809 ORTHO05D003935 2.1e-09 67.4 93 38.7
BcaNung06532 Brassica carinata HOM05D003809 ORTHO05D003935 2.1e-09 67.4 57 45.6
C03p00540 Brassica napus HOM05D003809 ORTHO05D003935 2.1e-09 67.4 57 45.6
BolC3t12620H Brassica oleracea HOM05D003809 ORTHO05D003935 2.1e-09 67.4 57 45.6
Gorai.006G181700 Gossypium raimondii HOM05D003809 ORTHO05D003935 2.1e-09 67.4 102 38.2
Rhsim13G0070300 Rhododendron simsii HOM05D003809 ORTHO05D003935 2.1e-09 67.4 57 47.4
Sabra06G0076000 Salix brachista HOM05D003809 ORTHO05D003935 2.1e-09 67.4 109 33.9
Sp6g40590 Schrenkiella parvula HOM05D003809 ORTHO05D003935 2.1e-09 67.4 165 29.7
Duzib106G1511 Durio zibethinus HOM05D003809 ORTHO05D003935 2.7e-09 67.0 98 33.7
FvH4_6g11650 Fragaria vesca HOM05D003809 ORTHO05D003935 2.7e-09 67.0 109 39.4
FAN14G0248 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.7e-09 67.0 109 39.4
A03p00380 Brassica napus HOM05D003809 ORTHO05D003935 3.6e-09 66.6 100 34.0
FAN14G4099 Fragaria x ananassa HOM05D003809 ORTHO05D003935 3.6e-09 66.6 109 39.4
Os01g0856900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 3.6e-09 66.6 101 38.6
Gohir.D09G160100 Gossypium hirsutum HOM05D003809 ORTHO05D003935 4.7e-09 66.2 102 38.2
MBI05_g34490_MAGBIO Magnolia biondii HOM05D003809 ORTHO05D003935 4.7e-09 66.2 52 44.2
Manes.01G162300 Manihot esculenta HOM05D003809 ORTHO05D003935 4.7e-09 66.2 57 42.1
PGR004G0704 Punica granatum HOM05D003809 ORTHO05D003935 4.7e-09 66.2 59 49.2
Ca_20297_v3 Cicer arietinum L. HOM05D003809 ORTHO05D003935 6.1e-09 65.9 108 33.3
Lj3g0017704 Lotus japonicus HOM05D003809 ORTHO05D003935 6.1e-09 65.9 57 47.4
Nn2g11448 Nelumbo nucifera HOM05D003809 ORTHO05D003935 6.1e-09 65.9 59 45.8
SalBow4G1747 Salvia bowleyana HOM05D003809 ORTHO05D003935 6.1e-09 65.9 107 32.7
FvH4_3g38430 Fragaria vesca HOM05D003809 ORTHO05D003935 8.0e-09 65.5 64 39.1
FAN11G1208 Fragaria x ananassa HOM05D003809 ORTHO05D003935 8.0e-09 65.5 64 39.1
FAN21G3156 Fragaria x ananassa HOM05D003809 ORTHO05D003935 8.0e-09 65.5 64 39.1
FAN25G1218 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.0e-09 65.5 64 39.1
Lalb_Chr01g0022961 Lupinus albus HOM05D003809 ORTHO05D003935 8.0e-09 65.5 57 40.4
Sopen09g007230 Solanum pennellii HOM05D003809 ORTHO05D003935 8.0e-09 65.5 91 37.4
arahy.Tifrunner.gnm1.ann1.TSB66L Arachis hypogaea HOM05D003809 ORTHO05D003935 1.0e-08 65.1 106 33.0
Lj3A954G70 Lonicera japonica HOM05D003809 ORTHO05D003935 1.0e-08 65.1 61 41.0
Sc06g0006210 Simmondsia chinensis HOM05D003809 ORTHO05D003935 1.0e-08 65.1 79 38.0
TPR.G13325 Trifolium pratense HOM05D003809 ORTHO05D003935 1.0e-08 65.1 99 34.3
Lalb_Chr19g0124721 Lupinus albus HOM05D003809 ORTHO05D003935 1.4e-08 64.7 89 33.7
Ah.08g221090 Amaranthus hybridus HOM05D003809 ORTHO05D003935 1.8e-08 64.3 112 33.9
ATR0618G237 Amborella trichopoda HOM05D003809 ORTHO05D003935 1.8e-08 64.3 58 43.1
Lsat_1_v5_gn_5_155280 Lactuca sativa HOM05D003809 ORTHO05D003935 1.8e-08 64.3 128 33.6
Prupe.6G058700 Prunus persica HOM05D003809 ORTHO05D003935 1.8e-08 64.3 111 36.9
Eucgr.K02988 Eucalyptus grandis HOM05D003809 ORTHO05D003935 2.3e-08 63.9 111 36.0
DCAR_018710 Daucus carota HOM05D003809 ORTHO05D003935 3.0e-08 63.5 110 30.0
ECA246G4062 Erigeron canadensis HOM05D000041 ORTHO05D000452 3.0e-08 63.5 56 41.1
FAN16G0765 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.0e-08 63.2 64 37.5
Glyma.03G062500 Glycine max HOM05D003809 ORTHO05D003935 4.0e-08 63.2 57 45.6
Phvul.010G002900 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 4.0e-08 63.2 111 28.8
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 4.0e-08 63.2 78 39.7
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 4.0e-08 63.2 57 43.9
CDE03G0216 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 5.2e-08 62.8 120 37.5
Cc01_g20760 Coffea canephora HOM05D003809 ORTHO05D003935 5.2e-08 62.8 64 42.2
Cc06_g01490 Coffea canephora HOM05D003809 ORTHO05D003935 5.2e-08 62.8 64 42.2
Medtr4g015550 Medicago truncatula HOM05D003809 ORTHO05D003935 5.2e-08 62.8 120 31.7
Zm00001eb367050 Zea mays HOM05D003809 ORTHO05D003935 5.2e-08 62.8 58 50.0
Lj1g0000205 Lotus japonicus HOM05D003809 ORTHO05D003935 6.7e-08 62.4 67 37.3
Thhalv10013736m.g Eutrema salsugineum HOM05D003809 ORTHO05D003935 8.8e-08 62.0 117 32.5
Glyma.03G061700 Glycine max HOM05D003809 ORTHO05D003935 8.8e-08 62.0 57 45.6
Glyma.03G061802 Glycine max HOM05D003809 ORTHO05D003935 8.8e-08 62.0 57 45.6
Glyma.03G061852 Glycine max HOM05D003809 ORTHO05D003935 8.8e-08 62.0 57 45.6
Glyma.03G062100 Glycine max HOM05D003809 ORTHO05D003935 8.8e-08 62.0 57 45.6
Glyma.03G062300 Glycine max HOM05D003809 ORTHO05D003935 8.8e-08 62.0 57 45.6
Glyma.U024600 Glycine max HOM05D003809 ORTHO05D003935 8.8e-08 62.0 57 45.6
Psat7g246040 Pisum sativum HOM05D003809 ORTHO05D003935 8.8e-08 62.0 86 33.7
arahy.Tifrunner.gnm1.ann1.31N575 Arachis hypogaea HOM05D003809 ORTHO05D003935 1.2e-07 61.6 106 31.1
arahy.Tifrunner.gnm1.ann1.3JQR8Y Arachis hypogaea HOM05D003809 ORTHO05D003935 1.2e-07 61.6 106 31.1
MSTRG.10226 Avicennia marina HOM05D003809 ORTHO05D003935 1.2e-07 61.6 88 37.5
ECA248G2658 Erigeron canadensis HOM05D003809 ORTHO05D003935 1.5e-07 61.2 121 33.1
Manes.02G120500 Manihot esculenta HOM05D003809 ORTHO05D003935 1.5e-07 61.2 57 40.4
Nitab4.5_0000335g0110 Nicotiana tabacum HOM05D003809 ORTHO05D003935 1.5e-07 61.2 105 32.4
CDE04G0185 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 2.0e-07 60.8 52 50.0
Glyma.07G148000 Glycine max HOM05D003809 ORTHO05D003935 2.0e-07 60.8 56 42.9
THA.LOC104816652 Tarenaya hassleriana HOM05D003809 ORTHO05D003935 2.0e-07 60.8 107 32.7
Glyma.01G115000 Glycine max HOM05D003809 ORTHO05D003935 3.3e-07 60.1 108 35.2
Peaxi162Scf00141g00342 Petunia axillaris HOM05D003809 ORTHO05D003935 3.3e-07 60.1 120 28.3
CARHR211600 Cardamine hirsuta HOM05D003809 ORTHO05D003935 4.4e-07 59.7 157 31.2
Glyma.03G062800 Glycine max HOM05D003809 ORTHO05D003935 4.4e-07 59.7 108 32.4
CSS0006268 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 5.7e-07 59.3 86 34.9
Zm00001eb289050 Zea mays HOM05D003809 ORTHO05D003935 5.7e-07 59.3 101 33.7
Glyma.03G063000 Glycine max HOM05D003809 ORTHO05D003935 7.5e-07 58.9 108 31.5
SGA_v2.0_scaffold240G44100 Striga asiatica HOM05D003809 ORTHO05D003935 7.5e-07 58.9 109 34.9
Nitab4.5_0008420g0020 Nicotiana tabacum HOM05D003809 ORTHO05D003935 1.3e-06 58.2 105 31.4
VMungo1383G0216 Vigna mungo HOM05D003809 ORTHO05D003935 1.3e-06 58.2 62 33.9
Glyma.18G199300 Glycine max HOM05D003809 ORTHO05D003935 1.7e-06 57.8 56 41.1
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 2.2e-06 57.4 128 25.0
Os05g0446900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 2.2e-06 57.4 57 36.8
CAN.G772.1 Capsicum annuum HOM05D003809 ORTHO05D003935 2.8e-06 57.0 103 31.1
Phvul.008G105500 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 2.8e-06 57.0 101 31.7
Potri.009G044800 Populus trichocarpa HOM05D003809 ORTHO05D003935 2.8e-06 57.0 57 35.1
Sabra09G0032300 Salix brachista HOM05D000001 ORTHO05D000003 3.7e-06 56.6 57 35.1


User provided reference genes

Program Settings