Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019331 Vanilla planifolia HOM05D001470 ORTHO05D429922 3.7e-63 244.6 115 100.0
Glyma.04G248900 Glycine max HOM05D001470 ORTHO05D006756 7.7e-08 60.8 72 52.8
Glyma.06G114100 Glycine max HOM05D001470 ORTHO05D006756 7.7e-08 60.8 72 52.8
Pp3c13_4510 Physcomitrium patens HOM05D001470 ORTHO05D006756 7.7e-08 60.8 73 49.3
CiPaw.16G026200 Carya illinoinensis HOM05D001470 ORTHO05D006756 1.3e-07 60.1 72 52.8
Gohir.D05G238900 Gossypium hirsutum HOM05D001470 ORTHO05D006756 2.2e-07 59.3 72 51.4
Gorai.009G247600 Gossypium raimondii HOM05D001470 ORTHO05D006756 2.2e-07 59.3 72 51.4
PGR044G0286 Punica granatum HOM05D001470 ORTHO05D006756 2.2e-07 59.3 69 50.7
Atru.chr13.1511 Acer truncatum HOM05D001470 ORTHO05D006756 2.9e-07 58.9 72 51.4
Ca_16563_v3 Cicer arietinum L. HOM05D001470 ORTHO05D006756 2.9e-07 58.9 72 51.4
Ciclev10001597m.g Citrus clementina HOM05D001470 ORTHO05D006756 2.9e-07 58.9 72 51.4
Duzib093G0261 Durio zibethinus HOM05D001470 ORTHO05D006756 2.9e-07 58.9 72 51.4
Duzib116G0621 Durio zibethinus HOM05D001470 ORTHO05D006756 2.9e-07 58.9 72 51.4
Eucgr.F04342 Eucalyptus grandis HOM05D001470 ORTHO05D006756 2.9e-07 58.9 72 51.4
Gohir.A05G236800 Gossypium hirsutum HOM05D001470 ORTHO05D006756 2.9e-07 58.9 69 50.7
Lj1g0008455 Lotus japonicus HOM05D001470 ORTHO05D006756 2.9e-07 58.9 72 50.0
Lalb_Chr11g0065951 Lupinus albus HOM05D001470 ORTHO05D006756 2.9e-07 58.9 72 51.4
MBI06_g04545_MAGBIO Magnolia biondii HOM05D001470 ORTHO05D006756 2.9e-07 58.9 72 51.4
Manes.18G079501 Manihot esculenta HOM05D001470 ORTHO05D006756 2.9e-07 58.9 72 51.4
Medtr3g088120 Medicago truncatula HOM05D001470 ORTHO05D006756 2.9e-07 58.9 72 51.4
Prupe.1G493300 Prunus persica HOM05D001470 ORTHO05D006756 2.9e-07 58.9 72 51.4
SMO329G0082 Selaginella moellendorffii HOM05D001470 ORTHO05D006756 2.9e-07 58.9 73 47.9
SEGI_11240 Sequoiadendron giganteum HOM05D001470 ORTHO05D006756 2.9e-07 58.9 69 50.7
THA.LOC104800207 Tarenaya hassleriana HOM05D001470 ORTHO05D006756 2.9e-07 58.9 69 50.7
TPR.G21071 Trifolium pratense HOM05D001470 ORTHO05D006756 2.9e-07 58.9 72 51.4
AagrBONN_evm.TU.Sc2ySwM_344.153 Anthoceros agrestis HOM05D001470 ORTHO05D006756 3.8e-07 58.5 76 47.4
Cpa.g.sc64.112 Carica papaya HOM05D001470 ORTHO05D006756 3.8e-07 58.5 69 50.7
MD00G1028800 Malus domestica HOM05D001470 ORTHO05D006756 5.0e-07 58.2 72 51.4
Os02g0775200 Oryza sativa ssp. japonica HOM05D001470 ORTHO05D006756 5.0e-07 58.2 73 50.7
SHI31507 Sapria himalayana HOM05D001470 ORTHO05D006756 5.0e-07 58.2 59 55.9
Sabra02G0063600 Salix brachista HOM05D001470 ORTHO05D006756 6.5e-07 57.8 69 50.7
SalBow7G2997 Salvia bowleyana HOM05D001470 ORTHO05D006756 6.5e-07 57.8 85 41.2
Solyc06g060150.3 Solanum lycopersicum HOM05D001470 ORTHO05D006756 6.5e-07 57.8 63 50.8
CANSAT25G1662 Cannabis sativa HOM05D001470 ORTHO05D006756 8.5e-07 57.4 72 50.0
MD15G1345300 Malus domestica HOM05D001470 ORTHO05D006756 8.5e-07 57.4 72 50.0
Mapoly0024s0100 Marchantia polymorpha HOM05D001470 ORTHO05D006756 8.5e-07 57.4 72 50.0
PSO170G0410 Papaver somniferum HOM05D001470 ORTHO05D006756 8.5e-07 57.4 72 50.0
PSO528G0178 Papaver somniferum HOM05D001470 ORTHO05D006756 8.5e-07 57.4 72 50.0
Psat5g086560 Pisum sativum HOM05D001470 ORTHO05D006756 8.5e-07 57.4 59 55.9
QL09p033894 Quercus lobata HOM05D001470 ORTHO05D006756 8.5e-07 57.4 72 50.0
Zm00001eb256550 Zea mays HOM05D001470 ORTHO05D006756 8.5e-07 57.4 73 49.3
Aa31LG4G7480 Aethionema arabicum HOM05D001470 ORTHO05D006756 1.1e-06 57.0 69 49.3
AL2G37670 Arabidopsis lyrata HOM05D001470 ORTHO05D006756 1.1e-06 57.0 69 49.3
AT1G77470 Arabidopsis thaliana HOM05D001470 ORTHO05D006756 1.1e-06 57.0 69 49.3
BcaB02g07107 Brassica carinata HOM05D001470 ORTHO05D006756 1.1e-06 57.0 72 50.0
BcaB05g25051 Brassica carinata HOM05D001470 ORTHO05D006756 1.1e-06 57.0 72 50.0
BcaC03g15740 Brassica carinata HOM05D001470 ORTHO05D006756 1.1e-06 57.0 69 49.3
BcaC08g45476 Brassica carinata HOM05D001470 ORTHO05D006756 1.1e-06 57.0 72 50.0
A07p27990 Brassica napus HOM05D001470 ORTHO05D006756 1.1e-06 57.0 72 50.0
C02p34610 Brassica napus HOM05D001470 ORTHO05D006756 1.1e-06 57.0 69 49.3
C06p31240 Brassica napus HOM05D001470 ORTHO05D006756 1.1e-06 57.0 72 50.0
BolC2t09486H Brassica oleracea HOM05D001470 ORTHO05D006756 1.1e-06 57.0 69 49.3
BolC6t38263H Brassica oleracea HOM05D001470 ORTHO05D006756 1.1e-06 57.0 72 50.0
BraA02t07148Z Brassica rapa HOM05D001470 ORTHO05D006756 1.1e-06 57.0 72 50.0
BraA07t30444Z Brassica rapa HOM05D001470 ORTHO05D006756 1.1e-06 57.0 72 50.0
CARHR070990 Cardamine hirsuta HOM05D001470 ORTHO05D006756 1.1e-06 57.0 69 49.3
CDE06G1142 Ceratophyllum demersum HOM05D001470 ORTHO05D006756 1.1e-06 57.0 72 50.0
Thhalv10018756m.g Eutrema salsugineum HOM05D001470 ORTHO05D006756 1.1e-06 57.0 69 49.3
Potri.002G081200 Populus trichocarpa HOM05D001470 ORTHO05D006756 1.1e-06 57.0 69 49.3
RcHm_v2.0_Chr6g0296261 Rosa chinensis HOM05D001470 ORTHO05D006756 1.1e-06 57.0 72 50.0
Sp5g32630 Schrenkiella parvula HOM05D001470 ORTHO05D006756 1.1e-06 57.0 69 49.3
Hund17307 Selenicereus undatus HOM05D001470 ORTHO05D006756 1.1e-06 57.0 69 49.3
Sc07g0004500 Simmondsia chinensis HOM05D001470 ORTHO05D006756 1.1e-06 57.0 72 50.0
TWI60G1154 Tripterygium wilfordii HOM05D001470 ORTHO05D006756 1.1e-06 57.0 69 49.3
ATR0709G002 Amborella trichopoda HOM05D001470 ORTHO05D006756 1.4e-06 56.6 69 50.7
COL.COLO4_37946 Corchorus olitorius HOM05D001470 ORTHO05D006756 1.4e-06 56.6 72 50.0
Nn5g28359 Nelumbo nucifera HOM05D001470 ORTHO05D006756 1.4e-06 56.6 72 50.0
SGA_v2.0_scaffold52G18953 Striga asiatica HOM05D001470 ORTHO05D006756 1.4e-06 56.6 59 54.2
TWI32G1289 Tripterygium wilfordii HOM05D001470 ORTHO05D006756 1.4e-06 56.6 59 54.2
GSVIVG01008841001 Vitis vinifera HOM05D001470 ORTHO05D006756 1.4e-06 56.6 72 50.0
arahy.Tifrunner.gnm1.ann1.0P0L33 Arachis hypogaea HOM05D001470 ORTHO05D006756 1.9e-06 56.2 69 49.3
TAR628G0775 Trochodendron aralioides HOM05D001470 ORTHO05D006756 1.9e-06 56.2 72 48.6
Ah.05g170940 Amaranthus hybridus HOM05D001470 ORTHO05D006756 2.5e-06 55.8 72 48.6
Aqoxy6G00254 Aquilegia oxysepala HOM05D001470 ORTHO05D006756 2.5e-06 55.8 69 47.8
MSTRG.25372 Avicennia marina HOM05D001470 ORTHO05D006756 2.5e-06 55.8 63 49.2
CAN.G643.3 Capsicum annuum HOM05D001470 ORTHO05D006756 2.5e-06 55.8 63 49.2
Hma1.2p1_0129F.1_g060420 Hydrangea macrophylla HOM05D001470 ORTHO05D006756 2.5e-06 55.8 69 47.8
Hma1.2p1_0129F.1_g060430 Hydrangea macrophylla HOM05D001470 ORTHO05D006756 2.5e-06 55.8 69 47.8
Nitab4.5_0000322g0050 Nicotiana tabacum HOM05D001470 ORTHO05D006756 2.5e-06 55.8 63 49.2
Nitab4.5_0005296g0020 Nicotiana tabacum HOM05D001470 ORTHO05D006756 2.5e-06 55.8 63 49.2
Peaxi162Scf00051g01416 Petunia axillaris HOM05D001470 ORTHO05D006756 2.5e-06 55.8 63 49.2
Sopen06g020270 Solanum pennellii HOM05D001470 ORTHO05D006756 2.5e-06 55.8 63 49.2
TAR376G0409 Trochodendron aralioides HOM05D001470 ORTHO05D006756 2.5e-06 55.8 72 48.6
EL10Ac1g01041 Beta vulgaris HOM05D001470 ORTHO05D006756 3.2e-06 55.5 69 47.8
A02p21300 Brassica napus HOM05D001470 ORTHO05D006756 3.2e-06 55.5 72 48.6
CSS0038151 Camellia sinensis var. sinensis HOM05D001470 ORTHO05D006756 3.2e-06 55.5 72 48.6
CSS0043529 Camellia sinensis var. sinensis HOM05D001470 ORTHO05D006756 3.2e-06 55.5 72 48.6
AUR62014313 Chenopodium quinoa HOM05D001470 ORTHO05D006756 3.2e-06 55.5 69 47.8
ClCG00G002270 Citrullus lanatus HOM05D001470 ORTHO05D006756 3.2e-06 55.5 59 54.2
ClCG08G005860 Citrullus lanatus HOM05D001470 ORTHO05D006756 3.2e-06 55.5 59 54.2
Cc10_g12180 Coffea canephora HOM05D001470 ORTHO05D006756 3.2e-06 55.5 63 49.2
MELO3C010631.2 Cucumis melo HOM05D001470 ORTHO05D006756 3.2e-06 55.5 59 54.2
CsaV3_6G034260 Cucumis sativus L. HOM05D001470 ORTHO05D006756 3.2e-06 55.5 59 54.2
Phvul.009G126000 Phaseolus vulgaris HOM05D001470 ORTHO05D006756 3.2e-06 55.5 59 52.5
Sed0023365 Sechium edule HOM05D001470 ORTHO05D006756 3.2e-06 55.5 59 54.2
Thecc.08G128800 Theobroma cacao HOM05D001470 ORTHO05D006756 3.2e-06 55.5 72 48.6
Carub.0002s2436 Capsella rubella HOM05D001470 ORTHO05D006756 4.2e-06 55.1 69 47.8
Migut.C01109 Erythranthe guttata HOM05D001470 ORTHO05D006756 4.2e-06 55.1 63 49.2
FvH4_2g27410 Fragaria vesca HOM05D001470 ORTHO05D006756 4.2e-06 55.1 78 44.9
FAN15G1146 Fragaria x ananassa HOM05D001470 ORTHO05D006756 4.2e-06 55.1 78 44.9
FAN20G1865 Fragaria x ananassa HOM05D001470 ORTHO05D006756 4.2e-06 55.1 78 44.9
FAN24G1004 Fragaria x ananassa HOM05D001470 ORTHO05D006756 4.2e-06 55.1 78 44.9
Lj4A633G16 Lonicera japonica HOM05D001470 ORTHO05D006756 4.2e-06 55.1 72 48.6
Oeu037225.1 Olea europaea HOM05D001470 ORTHO05D006756 4.2e-06 55.1 63 49.2
Cfa018570 Carpinus fangiana HOM05D001470 ORTHO05D006756 5.5e-06 54.7 72 50.0
Haze_17510 Corylus avellana HOM05D001470 ORTHO05D006756 5.5e-06 54.7 72 50.0
Hma1.2p1_0054F.1_g031130 Hydrangea macrophylla HOM05D001470 ORTHO05D006756 5.5e-06 54.7 72 48.6
SGA_v2.0_scaffold24G10439 Striga asiatica HOM05D001470 ORTHO05D006756 5.5e-06 54.7 59 52.5
Dinv27288 Davidia involucrata HOM05D001470 ORTHO05D006756 7.2e-06 54.3 69 46.4
FAN27G0086 Fragaria x ananassa HOM05D001470 ORTHO05D006756 7.2e-06 54.3 78 43.6
arahy.Tifrunner.gnm1.ann1.D58UPY Arachis hypogaea HOM05D001470 ORTHO05D006756 9.4e-06 53.9 69 47.8
AUR62019054 Chenopodium quinoa HOM05D001470 ORTHO05D006756 9.4e-06 53.9 69 46.4
PRCOL_00000131 Prasinoderma coloniale HOM05D001470 ORTHO05D006756 9.4e-06 53.9 63 49.2


User provided reference genes

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