Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 0.0e+00 1568.1 950 100.0
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 0.0e+00 1471.1 950 95.8
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 5.1e-190 669.1 997 54.7
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 1.4e-179 634.4 903 54.4
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 5.1e-174 615.9 999 52.4
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 7.4e-173 612.1 923 52.7
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 7.4e-173 612.1 902 54.4
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 8.4e-169 598.6 904 53.9
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 3.2e-168 596.7 921 52.8
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.5e-165 587.0 782 58.2
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.5e-165 587.0 904 52.8
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 2.8e-164 583.6 849 57.1
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 4.8e-164 582.8 971 50.4
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 9.0e-163 578.6 924 51.8
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 7.7e-162 575.5 899 53.8
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.7e-161 574.3 896 53.5
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.7e-161 574.3 966 52.8
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 9.4e-160 568.5 902 51.8
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.8e-158 564.3 942 51.4
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 5.1e-158 562.8 888 52.3
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 5.7e-157 559.3 959 50.9
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 2.2e-156 557.4 817 49.7
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 2.2e-156 557.4 909 50.4
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.2e-156 557.4 910 53.8
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 3.7e-156 556.6 897 53.6
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 3.1e-155 553.5 985 48.6
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 5.3e-155 552.7 797 53.5
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 9.1e-155 552.0 794 55.8
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 3.4e-154 550.1 797 56.0
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 5.9e-154 549.3 807 53.4
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 7.7e-154 548.9 984 48.7
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 3.6e-151 540.0 946 51.0
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 3.6e-151 540.0 844 50.0
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 4.7e-151 539.7 954 48.2
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 3.3e-149 533.5 827 52.4
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 5.7e-149 532.7 768 56.6
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 2.0e-146 524.2 799 53.6
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 2.0e-146 524.2 928 49.6
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 3.5e-146 523.5 799 53.7
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 1.0e-145 521.9 896 50.4
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 3.8e-145 520.0 916 49.8
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 8.5e-145 518.8 1015 49.0
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 1.1e-144 518.5 801 54.4
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 1.1e-144 518.5 790 52.9
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 1.1e-144 518.5 796 53.0
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 1.9e-144 517.7 809 52.2
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 2.7e-143 513.8 931 46.5
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 8.0e-143 512.3 923 49.3
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.8e-142 511.1 923 46.3
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 2.3e-142 510.8 788 52.5
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 4.0e-142 510.0 781 51.3
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 5.2e-142 509.6 955 49.7
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 5.2e-142 509.6 960 46.8
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 6.7e-142 509.2 974 49.2
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 4.4e-141 506.5 917 50.2
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 7.5e-141 505.8 976 48.6
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 9.7e-141 505.4 751 55.9
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 1.3e-140 505.0 973 49.6
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 1.3e-140 505.0 782 53.1
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 8.2e-140 502.3 916 47.7
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 1.1e-139 501.9 955 45.7
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 9.1e-139 498.8 940 50.1
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 1.2e-138 498.4 785 54.8
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 2.0e-138 497.7 982 47.9
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 2.2e-137 494.2 800 52.0
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 8.5e-137 492.3 1012 46.7
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 2.7e-135 487.3 796 51.8
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 8.0e-135 485.7 787 51.1
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.4e-134 485.0 784 52.0
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 3.4e-133 480.3 770 49.9
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 5.7e-133 479.6 912 49.0
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 2.8e-132 477.2 792 53.0
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 3.7e-132 476.9 931 46.5
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 4.8e-132 476.5 957 46.9
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 1.4e-131 474.9 954 47.1
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 2.4e-131 474.2 923 46.4
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 1.2e-130 471.9 793 53.1
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 2.0e-130 471.1 843 48.2
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 2.2e-129 467.6 948 47.5
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 5.5e-128 463.0 794 50.0
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 5.5e-128 463.0 810 49.9
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 9.4e-128 462.2 992 39.5
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 1.2e-127 461.8 799 48.8
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 1.6e-127 461.5 906 49.2
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 2.1e-127 461.1 898 48.2
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 8.0e-127 459.1 909 46.2
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 9.8e-125 452.2 843 46.3
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 6.3e-124 449.5 794 52.0
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 4.1e-123 446.8 907 48.6
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 7.0e-123 446.0 863 47.9
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 4.5e-122 443.4 908 48.7
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 3.8e-121 440.3 889 48.4
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 8.6e-121 439.1 943 46.3
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 2.5e-120 437.6 847 49.2
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 3.3e-120 437.2 744 47.2
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 7.3e-120 436.0 945 44.7
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 7.3e-120 436.0 739 46.4
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 1.6e-119 434.9 968 44.6
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 2.8e-119 434.1 718 51.8
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 8.0e-119 432.6 920 44.1
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 1.8e-118 431.4 808 47.2
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 4.0e-118 430.3 900 43.0
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 1.8e-115 421.4 920 45.2
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 1.2e-114 418.7 925 45.2
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 1.2e-114 418.7 925 45.2
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 1.6e-114 418.3 836 47.2
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 1.7e-113 414.8 851 47.5
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 3.0e-113 414.1 830 48.6
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 1.5e-112 411.8 793 50.1
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 1.0e-110 405.6 941 44.7
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 1.2e-109 402.1 976 40.6
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 1.5e-109 401.7 783 48.1
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.2e-106 392.1 836 46.3
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 6.0e-106 389.8 990 43.1
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 6.0e-106 389.8 844 46.2
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.0e-105 389.0 978 43.1
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 3.9e-97 360.5 848 45.6
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 3.9e-97 360.5 843 43.3
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 3.3e-96 357.5 784 46.8
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 5.6e-80 303.5 774 40.4
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 7.3e-80 303.1 281 62.3
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 3.0e-73 281.2 282 61.0
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 1.8e-70 271.9 584 49.1
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 2.0e-69 268.5 526 43.7
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 1.1e-67 262.7 289 54.3
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.9e-67 261.9 636 46.9
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.0e-65 256.1 268 54.9
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.8e-65 255.4 792 39.6
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 6.9e-62 243.4 426 42.3
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 6.5e-60 236.9 464 43.8
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 9.0e-54 216.5 221 59.7
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.7e-52 212.2 230 53.5
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-44 184.9 265 46.8
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 9.7e-40 169.9 196 54.6
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 3.8e-36 157.9 130 63.1
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.1e-27 129.8 71 91.5
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 8.2e-23 113.6 77 75.3
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 6.1e-18 97.4 165 44.8
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 1.2e-16 93.2 85 50.6
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 2.8e-15 88.6 134 44.8
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 3.7e-15 88.2 133 45.1
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 7.0e-14 84.0 128 44.5
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 5.9e-13 80.9 117 39.3
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 2.5e-11 75.5 146 34.2
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.0e-09 68.6 91 46.2
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 2.0e-08 65.9 765 24.3
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 3.7e-07 61.6 72 52.8
PSO339G2267 Papaver somniferum HOM05D004266 ORTHO05D005151 1.8e-06 59.3 114 28.9
PSO339G5784 Papaver somniferum HOM05D004266 ORTHO05D005151 1.8e-06 59.3 114 28.9
TWI34G1000 Tripterygium wilfordii HOM05D004266 ORTHO05D005151 3.1e-06 58.5 73 38.4
Lalb_Chr06g0161861 Lupinus albus HOM05D004266 ORTHO05D005151 4.1e-06 58.2 74 37.8
TWI60G1440 Tripterygium wilfordii HOM05D004266 ORTHO05D005151 4.1e-06 58.2 73 38.4
Ciclev10000749m.g Citrus clementina HOM05D004266 ORTHO05D005151 5.4e-06 57.8 73 38.4
Duzib116G0903 Durio zibethinus HOM05D004266 ORTHO05D005151 5.4e-06 57.8 73 38.4
Duzib211G0120 Durio zibethinus HOM05D004266 ORTHO05D005151 5.4e-06 57.8 73 38.4
Gohir.A05G247600 Gossypium hirsutum HOM05D004266 ORTHO05D005151 5.4e-06 57.8 73 38.4
Gohir.D05G249100 Gossypium hirsutum HOM05D004266 ORTHO05D005151 5.4e-06 57.8 73 38.4
Gohir.D06G114601 Gossypium hirsutum HOM05D004266 ORTHO05D005151 5.4e-06 57.8 73 38.4
Gorai.009G260200 Gossypium raimondii HOM05D004266 ORTHO05D005151 5.4e-06 57.8 73 38.4
Gorai.010G131000 Gossypium raimondii HOM05D004266 ORTHO05D005151 5.4e-06 57.8 73 38.4
Manes.02G186700 Manihot esculenta HOM05D004266 ORTHO05D005151 5.4e-06 57.8 73 38.4
Medtr1g097280 Medicago truncatula HOM05D004266 ORTHO05D005151 5.4e-06 57.8 74 39.2
Potri.002G061200 Populus trichocarpa HOM05D004266 ORTHO05D005151 5.4e-06 57.8 73 38.4
PGSC0003DMG400010340 Solanum tuberosum HOM05D004266 ORTHO05D005151 5.4e-06 57.8 80 33.8
THA.LOC104800099 Tarenaya hassleriana HOM05D004266 ORTHO05D005151 5.4e-06 57.8 73 38.4
THA.LOC104800222 Tarenaya hassleriana HOM05D004266 ORTHO05D005151 5.4e-06 57.8 73 38.4
Thecc.08G196800 Theobroma cacao HOM05D004266 ORTHO05D005151 5.4e-06 57.8 73 38.4
Cpa.g.sc26.136 Carica papaya HOM05D004266 ORTHO05D005151 7.0e-06 57.4 74 36.5
CBR_g33965 Chara braunii HOM05D004266 ORTHO05D005151 7.0e-06 57.4 81 34.6
Sed0023525 Sechium edule HOM05D004266 ORTHO05D005151 7.0e-06 57.4 76 36.8
AagrBONN_evm.TU.Sc2ySwM_228.143 Anthoceros agrestis HOM05D004266 ORTHO05D005151 9.2e-06 57.0 82 36.6
CDE07G0240 Ceratophyllum demersum HOM05D004266 ORTHO05D005151 9.2e-06 57.0 76 36.8
Zm00001eb201080 Zea mays HOM05D004266 ORTHO05D005151 9.2e-06 57.0 87 33.3


User provided reference genes

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