Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 0.0e+00 1080.5 623 100.0
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 5.4e-172 608.6 555 66.5
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 7.0e-164 581.6 633 59.9
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 6.8e-159 565.1 634 58.2
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 8.9e-159 564.7 651 58.2
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.4e-156 556.6 636 60.2
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 5.4e-156 555.4 529 63.7
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 7.0e-156 555.1 523 63.7
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 2.0e-155 553.5 633 58.1
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 9.5e-153 544.7 509 65.0
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 1.6e-152 543.9 637 57.3
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 4.7e-152 542.3 533 62.5
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 1.5e-150 537.3 509 62.5
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 2.0e-150 537.0 523 62.0
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 2.0e-150 537.0 632 54.9
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.7e-149 533.9 629 60.1
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 8.3e-149 531.6 628 56.2
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 1.4e-148 530.8 527 60.3
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 1.4e-148 530.8 546 61.0
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.4e-148 530.0 643 55.4
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 3.2e-148 529.6 638 56.0
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 4.1e-148 529.3 642 55.0
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 7.0e-148 528.5 642 55.0
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 9.2e-148 528.1 557 58.0
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 1.2e-147 527.7 655 55.7
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 4.6e-147 525.8 643 56.6
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 1.0e-146 524.6 626 57.8
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 5.0e-146 522.3 526 57.2
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 1.1e-145 521.2 641 55.9
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.9e-145 520.4 632 55.7
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 3.6e-144 516.2 526 58.2
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 3.6e-144 516.2 630 54.9
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 4.7e-144 515.8 638 54.5
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 4.7e-144 515.8 633 52.0
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 8.1e-144 515.0 540 58.1
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 1.4e-143 514.2 636 54.7
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 4.0e-143 512.7 574 55.1
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 5.2e-143 512.3 651 54.4
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 6.8e-143 511.9 532 59.4
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 1.2e-142 511.1 530 60.4
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 1.2e-142 511.1 579 56.5
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 2.0e-142 510.4 635 60.0
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 1.3e-141 507.7 464 62.3
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 1.7e-141 507.3 530 60.0
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 3.7e-141 506.1 519 58.2
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 6.4e-141 505.4 627 58.4
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 5.4e-140 502.3 638 59.1
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 5.4e-140 502.3 634 54.4
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 7.1e-140 501.9 632 55.2
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 7.1e-140 501.9 642 58.6
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 9.2e-140 501.5 522 58.4
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 7.8e-139 498.4 646 55.1
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 5.1e-138 495.7 637 53.7
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 6.6e-138 495.4 614 55.9
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 3.3e-137 493.0 638 58.8
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 9.5e-137 491.5 525 58.3
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 9.5e-137 491.5 651 49.0
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 3.6e-136 489.6 700 49.9
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 3.6e-136 489.6 533 58.3
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 6.2e-136 488.8 653 56.0
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 6.8e-135 485.3 464 61.0
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.2e-134 484.6 530 56.2
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 4.4e-134 482.6 453 61.4
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 5.8e-134 482.3 563 54.2
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 9.9e-134 481.5 574 55.6
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.7e-133 480.7 439 63.1
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 4.9e-133 479.2 436 63.1
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 6.4e-133 478.8 630 58.3
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 8.4e-133 478.4 551 57.9
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 3.2e-132 476.5 521 57.8
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 7.1e-132 475.3 534 57.7
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 7.1e-132 475.3 544 60.1
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 7.1e-132 475.3 603 55.1
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 2.7e-131 473.4 460 60.2
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 3.5e-131 473.0 465 61.9
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 2.3e-130 470.3 519 57.4
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 2.3e-130 470.3 636 57.4
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 3.0e-130 469.9 633 57.0
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 1.1e-129 468.0 671 47.4
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 5.6e-129 465.7 433 61.7
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 7.3e-129 465.3 650 48.9
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 1.8e-127 460.7 416 62.7
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 5.2e-127 459.1 635 54.8
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 9.9e-126 454.9 398 63.8
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 7.1e-124 448.7 337 71.2
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 3.5e-123 446.4 532 54.9
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 7.3e-121 438.7 629 53.7
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 3.6e-120 436.4 485 53.6
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 1.4e-119 434.5 597 48.4
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 1.8e-119 434.1 629 53.7
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 6.9e-119 432.2 564 50.5
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.4e-116 423.7 373 67.8
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 6.0e-115 419.1 536 52.1
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 8.7e-114 415.2 556 50.9
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 9.6e-113 411.8 546 50.0
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 1.1e-111 408.3 433 57.5
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 2.6e-110 403.7 531 51.8
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 9.9e-110 401.7 530 51.5
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 1.3e-106 391.3 527 50.1
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.5e-105 387.9 477 57.7
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 1.9e-105 387.5 429 53.6
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 1.3e-104 384.8 640 45.6
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 1.8e-103 380.9 560 48.4
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 4.5e-102 376.3 560 47.9
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 3.8e-101 373.2 347 57.9
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 1.4e-100 371.3 562 47.9
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 3.2e-100 370.2 562 47.9
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 5.5e-100 369.4 569 47.3
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 5.5e-100 369.4 339 59.3
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 1.2e-99 368.2 636 46.7
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 5.7e-97 359.4 315 71.7
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 2.1e-96 357.5 531 45.2
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 2.7e-91 340.5 348 54.3
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 3.0e-90 337.0 321 58.6
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 2.5e-89 334.0 353 54.7
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 9.7e-89 332.0 483 50.1
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.0e-82 310.5 370 53.0
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.9e-82 310.1 370 53.0
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.9e-82 310.1 370 53.0
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 5.1e-82 309.7 369 52.8
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 8.5e-69 265.8 486 43.2
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 5.2e-66 256.5 401 42.9
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 2.0e-65 254.6 469 39.9
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.6e-65 254.2 524 38.0
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 3.2e-60 237.3 316 48.7
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 5.4e-55 219.9 546 38.6
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 9.5e-52 209.1 326 43.6
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 5.6e-44 183.3 273 53.1
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 1.8e-39 168.3 203 48.3
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 6.6e-37 159.8 100 77.0
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 2.5e-36 157.9 136 66.2
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 5.4e-31 140.2 333 45.9
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 5.6e-28 130.2 181 44.8
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 5.6e-28 130.2 279 34.1
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 2.6e-25 121.3 360 30.3
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 2.6e-25 121.3 322 32.9
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 4.6e-22 110.5 328 29.9
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 6.8e-18 96.7 89 49.4
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 4.4e-17 94.0 60 78.3
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 2.7e-14 84.7 151 41.1
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 2.7e-14 84.7 53 73.6
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 3.1e-10 71.2 41 80.5
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 9.0e-10 69.7 141 42.6
Cpa.g.sc94.29 Carica papaya HOM05D004839 ORTHO05D006012 4.6e-06 57.4 48 62.5
Actinidia21317 Actinidia chinensis HOM05D004839 ORTHO05D006012 7.8e-06 56.6 39 66.7


User provided reference genes

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