Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018200 Vanilla planifolia HOM05D004103 ORTHO05D005242 4.5e-200 701.0 352 100.0
Nn1g07514 Nelumbo nucifera HOM05D004103 ORTHO05D005242 2.9e-90 336.3 343 54.5
Dinv21305 Davidia involucrata HOM05D004103 ORTHO05D005242 3.5e-88 329.3 352 53.1
MBI14_g08099_MAGBIO Magnolia biondii HOM05D004103 ORTHO05D005242 1.8e-87 327.0 329 54.4
Os04g0271000 Oryza sativa ssp. japonica HOM05D004103 ORTHO05D005242 1.5e-86 323.9 339 50.4
Zm00001eb425070 Zea mays HOM05D004103 ORTHO05D005242 2.5e-86 323.2 343 50.4
Aqoxy4G02289 Aquilegia oxysepala HOM05D004103 ORTHO05D005242 1.3e-85 320.9 342 54.4
Dinv40861 Davidia involucrata HOM05D004103 ORTHO05D005242 1.2e-83 314.3 341 53.4
CDE10G0035 Ceratophyllum demersum HOM05D004103 ORTHO05D005242 5.9e-83 312.0 304 53.0
Glyma.18G076300 Glycine max HOM05D004103 ORTHO05D005242 7.6e-83 311.6 307 55.0
Phvul.006G057700 Phaseolus vulgaris HOM05D004103 ORTHO05D005242 1.0e-82 311.2 307 55.4
Lj1A797G65 Lonicera japonica HOM05D004103 ORTHO05D005242 1.3e-82 310.8 303 53.1
Actinidia07861 Actinidia chinensis HOM05D004103 ORTHO05D005242 2.2e-82 310.1 342 50.6
GSVIVG01014688001 Vitis vinifera HOM05D004103 ORTHO05D005242 2.9e-82 309.7 301 55.5
Sc03g0011390 Simmondsia chinensis HOM05D004103 ORTHO05D005242 5.0e-82 308.9 304 56.2
MD03G1179400 Malus domestica HOM05D004103 ORTHO05D005242 8.4e-82 308.1 344 51.7
MD11G1199100 Malus domestica HOM05D004103 ORTHO05D005242 1.1e-81 307.8 343 51.6
Prupe.4G243700 Prunus persica HOM05D004103 ORTHO05D005242 1.4e-81 307.4 343 51.0
Haze_09826 Corylus avellana HOM05D004103 ORTHO05D005242 1.9e-81 307.0 340 52.4
Lj6g0015560 Lotus japonicus HOM05D004103 ORTHO05D005242 5.5e-81 305.4 348 48.3
Psat5g167680 Pisum sativum HOM05D004103 ORTHO05D005242 9.3e-81 304.7 310 52.6
Hma1.2p1_1402F.1_g281120 Hydrangea macrophylla HOM05D004103 ORTHO05D005242 1.2e-80 304.3 311 54.3
arahy.Tifrunner.gnm1.ann1.V7V5NB Arachis hypogaea HOM05D004103 ORTHO05D005242 2.1e-80 303.5 311 53.1
CiPaw.11G204100 Carya illinoinensis HOM05D004103 ORTHO05D005242 3.5e-80 302.8 340 51.2
Sed0001626 Sechium edule HOM05D004103 ORTHO05D005242 3.5e-80 302.8 301 55.1
Solyc07g065550.3 Solanum lycopersicum HOM05D004103 ORTHO05D005242 4.6e-80 302.4 312 52.2
ATR0691G219 Amborella trichopoda HOM05D004103 ORTHO05D005242 7.9e-80 301.6 301 53.2
CSS0030605 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 7.9e-80 301.6 341 50.1
Nitab4.5_0002736g0050 Nicotiana tabacum HOM05D004103 ORTHO05D005242 7.9e-80 301.6 301 54.2
Oeu005958.1 Olea europaea HOM05D004103 ORTHO05D005242 7.9e-80 301.6 346 49.7
DCAR_019676 Daucus carota HOM05D004103 ORTHO05D005242 1.0e-79 301.2 299 52.2
Duzib170G0622 Durio zibethinus HOM05D004103 ORTHO05D005242 1.0e-79 301.2 340 49.4
arahy.Tifrunner.gnm1.ann1.PC7QSD Arachis hypogaea HOM05D004103 ORTHO05D005242 1.3e-79 300.8 311 52.4
PGSC0003DMG400022278 Solanum tuberosum HOM05D004103 ORTHO05D005242 1.3e-79 300.8 301 53.2
CiPaw.12G138300 Carya illinoinensis HOM05D004103 ORTHO05D005242 3.9e-79 299.3 328 53.0
Ciclev10008206m.g Citrus clementina HOM05D004103 ORTHO05D005242 3.9e-79 299.3 346 50.3
Sopen07g033750 Solanum pennellii HOM05D004103 ORTHO05D005242 3.9e-79 299.3 312 51.6
CSS0020645 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 5.1e-79 298.9 347 50.7
Cfa020190 Carpinus fangiana HOM05D004103 ORTHO05D005242 8.7e-79 298.1 340 51.5
Duzib213G0942 Durio zibethinus HOM05D004103 ORTHO05D005242 8.7e-79 298.1 330 50.6
EL10Ac4g07564 Beta vulgaris HOM05D004103 ORTHO05D005242 1.9e-78 297.0 337 52.2
MELO3C024942.2 Cucumis melo HOM05D004103 ORTHO05D005242 2.5e-78 296.6 342 48.8
PSO675G6166 Papaver somniferum HOM05D004103 ORTHO05D005242 3.3e-78 296.2 343 48.4
CsaV3_7G011360 Cucumis sativus L. HOM05D004103 ORTHO05D005242 4.3e-78 295.8 340 47.9
Actinidia05004 Actinidia chinensis HOM05D004103 ORTHO05D005242 5.7e-78 295.4 301 54.5
CANSAT11G1558 Cannabis sativa HOM05D004103 ORTHO05D005242 5.7e-78 295.4 328 51.2
QL08p004112 Quercus lobata HOM05D004103 ORTHO05D005242 5.7e-78 295.4 343 50.1
Atru.chr2.3690 Acer truncatum HOM05D004103 ORTHO05D005242 9.7e-78 294.7 300 54.3
ClCG09G021370 Citrullus lanatus HOM05D004103 ORTHO05D005242 9.7e-78 294.7 300 53.0
Migut.M01651 Erythranthe guttata HOM05D004103 ORTHO05D005242 1.3e-77 294.3 341 49.9
Eucgr.F02047 Eucalyptus grandis HOM05D004103 ORTHO05D005242 1.3e-77 294.3 347 49.6
Medtr3g460800 Medicago truncatula HOM05D004103 ORTHO05D005242 1.3e-77 294.3 314 50.3
HanXRQChr03g0075041 Helianthus annuus HOM05D004103 ORTHO05D005242 1.6e-77 293.9 348 47.1
PSO541G4137 Papaver somniferum HOM05D004103 ORTHO05D005242 1.6e-77 293.9 343 47.8
Nitab4.5_0009777g0010 Nicotiana tabacum HOM05D004103 ORTHO05D005242 2.8e-77 293.1 311 52.1
Lsat_1_v5_gn_5_1860 Lactuca sativa HOM05D004103 ORTHO05D005242 3.7e-77 292.7 345 49.0
unitig_747.g21638 Utricularia gibba HOM05D004103 ORTHO05D005242 3.7e-77 292.7 308 51.0
CAN.G623.3 Capsicum annuum HOM05D004103 ORTHO05D005242 8.2e-77 291.6 300 51.3
Hund06463 Selenicereus undatus HOM05D004103 ORTHO05D005242 1.1e-76 291.2 341 49.6
PGR083G2215 Punica granatum HOM05D004103 ORTHO05D005242 2.4e-76 290.0 301 52.8
AUR62017106 Chenopodium quinoa HOM05D004103 ORTHO05D005242 3.1e-76 289.7 338 49.1
RcHm_v2.0_Chr5g0053471 Rosa chinensis HOM05D004103 ORTHO05D005242 3.1e-76 289.7 343 49.6
AUR62036459 Chenopodium quinoa HOM05D004103 ORTHO05D005242 4.1e-76 289.3 319 51.4
Gorai.013G152600 Gossypium raimondii HOM05D004103 ORTHO05D005242 4.1e-76 289.3 318 50.0
MSTRG.15796 Avicennia marina HOM05D004103 ORTHO05D005242 5.3e-76 288.9 301 52.2
Thecc.07G013500 Theobroma cacao HOM05D004103 ORTHO05D005242 5.3e-76 288.9 326 49.1
Peaxi162Scf00139g01322 Petunia axillaris HOM05D004103 ORTHO05D005242 6.9e-76 288.5 310 51.3
COL.COLO4_09834 Corchorus olitorius HOM05D004103 ORTHO05D005242 9.0e-76 288.1 311 50.5
Potri.001G368100 Populus trichocarpa HOM05D004103 ORTHO05D005242 1.5e-75 287.3 304 51.6
Cc00_g16050 Coffea canephora HOM05D004103 ORTHO05D005242 2.0e-75 287.0 301 51.2
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 2.0e-75 287.0 310 48.7
Gohir.A13G132700 Gossypium hirsutum HOM05D004103 ORTHO05D005242 4.5e-75 285.8 318 49.4
Sabra16G0241200 Salix brachista HOM05D004103 ORTHO05D005242 5.9e-75 285.4 301 52.8
FvH4_3g29170 Fragaria vesca HOM05D004103 ORTHO05D005242 1.3e-74 284.3 343 48.1
FAN11G2140 Fragaria x ananassa HOM05D004103 ORTHO05D005242 1.3e-74 284.3 343 48.1
Ciclev10017468m.g Citrus clementina HOM05D004103 ORTHO05D005242 3.8e-74 282.7 303 52.5
AT5G55760 Arabidopsis thaliana HOM05D004103 ORTHO05D005242 8.5e-74 281.6 313 48.6
SGA_v2.0_scaffold171G38864 Striga asiatica HOM05D004103 ORTHO05D005242 8.5e-74 281.6 329 48.0
THA.LOC104811666 Tarenaya hassleriana HOM05D004103 ORTHO05D005242 8.5e-74 281.6 299 51.8
A03p13830 Brassica napus HOM05D004103 ORTHO05D005242 1.1e-73 281.2 314 49.0
BolC3t14049H Brassica oleracea HOM05D004103 ORTHO05D005242 1.4e-73 280.8 314 49.0
BraA03t10686Z Brassica rapa HOM05D004103 ORTHO05D005242 1.4e-73 280.8 314 49.0
QL04p068062 Quercus lobata HOM05D004103 ORTHO05D005242 2.5e-73 280.0 343 47.5
TWI38G1679 Tripterygium wilfordii HOM05D004103 ORTHO05D005242 2.5e-73 280.0 309 49.5
Aa31LG3G11690 Aethionema arabicum HOM05D004103 ORTHO05D005242 3.2e-73 279.6 298 50.0
AL77U10010 Arabidopsis lyrata HOM05D004103 ORTHO05D005242 3.2e-73 279.6 313 48.2
Sc21g0000570 Simmondsia chinensis HOM05D004103 ORTHO05D005242 3.2e-73 279.6 312 49.0
AL8G31340 Arabidopsis lyrata HOM05D004103 ORTHO05D005242 4.2e-73 279.3 312 48.7
CSS0037338 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 5.5e-73 278.9 363 46.8
FAN25G3398 Fragaria x ananassa HOM05D004103 ORTHO05D005242 7.2e-73 278.5 343 46.9
SalBow8G0562 Salvia bowleyana HOM05D004103 ORTHO05D005242 7.2e-73 278.5 319 48.6
vmacro11590 Vaccinium macrocarpon HOM05D004103 ORTHO05D005242 7.2e-73 278.5 343 49.9
BcaC01g06391 Brassica carinata HOM05D004103 ORTHO05D005242 9.4e-73 278.1 314 48.7
C03p16270 Brassica napus HOM05D004103 ORTHO05D005242 9.4e-73 278.1 314 48.7
Manes.03G141400 Manihot esculenta HOM05D004103 ORTHO05D005242 1.6e-72 277.3 314 49.7
Thhalv10013461m.g Eutrema salsugineum HOM05D004103 ORTHO05D005242 2.1e-72 276.9 313 48.6
BcaB01g04374 Brassica carinata HOM05D004103 ORTHO05D005242 2.7e-72 276.6 313 48.2
Sp6g17670 Schrenkiella parvula HOM05D004103 ORTHO05D005242 2.7e-72 276.6 313 48.2
ECA246G0435 Erigeron canadensis HOM05D004103 ORTHO05D005242 3.6e-72 276.2 351 45.9
Carub.0008s1614 Capsella rubella HOM05D004103 ORTHO05D005242 1.4e-71 274.2 314 47.8
FAN21G3724 Fragaria x ananassa HOM05D004103 ORTHO05D005242 1.4e-71 274.2 338 47.6
Sc03g0011310 Simmondsia chinensis HOM05D004103 ORTHO05D005242 1.4e-71 274.2 245 60.8
Actinidia30403 Actinidia chinensis HOM05D004103 ORTHO05D005242 5.1e-71 272.3 339 49.3
Lsat_1_v5_gn_9_103601 Lactuca sativa HOM05D004103 ORTHO05D005242 5.1e-71 272.3 310 47.1
HanXRQChr05g0160111 Helianthus annuus HOM05D004103 ORTHO05D005242 6.7e-71 271.9 349 46.4
Rhsim06G0229800 Rhododendron simsii HOM05D004103 ORTHO05D005242 2.5e-70 270.0 354 48.3
Rhsim06G0177100 Rhododendron simsii HOM05D004103 ORTHO05D005242 7.9e-64 248.4 348 43.1
Lj1A890G48 Lonicera japonica HOM05D004103 ORTHO05D005242 2.0e-62 243.8 358 43.0
Gohir.D13G136100 Gossypium hirsutum HOM05D004103 ORTHO05D005242 1.7e-58 230.7 216 56.9
Ca_22143_v3 Cicer arietinum L. HOM05D004103 ORTHO05D005242 1.9e-57 227.3 413 37.0
Cpa.g.sc12.142 Carica papaya HOM05D004103 ORTHO05D005242 2.5e-57 226.9 208 59.6
Glyma.08G330200 Glycine max HOM05D004103 ORTHO05D005242 5.5e-57 225.7 216 55.6
Pp3c19_11620 Physcomitrium patens HOM05D004103 ORTHO05D005242 3.6e-56 223.0 315 41.9
TAR629G0286 Trochodendron aralioides HOM05D004103 ORTHO05D005242 3.6e-56 223.0 188 63.8
EL10Ac9g22672 Beta vulgaris HOM05D004103 ORTHO05D005242 3.0e-55 219.9 326 42.6
CDE10G0306 Ceratophyllum demersum HOM05D004103 ORTHO05D005242 9.1e-52 208.4 206 49.5
VMungo0540G0291 Vigna mungo HOM05D004103 ORTHO05D005242 1.3e-50 204.5 213 53.1
TPR.G24129 Trifolium pratense HOM05D004103 ORTHO05D005242 3.2e-49 199.9 194 53.6
vmacro12077 Vaccinium macrocarpon HOM05D004103 ORTHO05D005242 4.4e-46 189.5 495 31.3
Lalb_Chr15g0082141 Lupinus albus HOM05D004103 ORTHO05D005242 3.5e-43 179.9 162 59.3
BcaB01g04371 Brassica carinata HOM05D004103 ORTHO05D005242 1.0e-42 178.3 226 44.2
SMO234G0037 Selaginella moellendorffii HOM05D004103 ORTHO05D005242 8.3e-37 158.7 189 46.6
SHI10165 Sapria himalayana HOM05D004103 ORTHO05D005242 7.3e-33 145.6 341 33.7
SEGI_18003 Sequoiadendron giganteum HOM05D004103 ORTHO05D005242 2.9e-29 133.7 142 44.4
Lalb_Chr15g0082151 Lupinus albus HOM05D004103 ORTHO05D005242 1.6e-27 127.9 181 42.0
PRCOL_00006128 Prasinoderma coloniale HOM05D004103 ORTHO05D005242 1.5e-25 121.3 167 44.3
MCO09G505 Micromonas commoda HOM05D004103 ORTHO05D005242 7.0e-20 102.4 151 42.4
TPR.G796 Trifolium pratense HOM05D004103 ORTHO05D005242 7.8e-19 99.0 128 44.5
Cre10.g462200 Chlamydomonas reinhardtii HOM05D004103 ORTHO05D005242 1.3e-18 98.2 200 32.5
Atru.chr6.3401 Acer truncatum HOM05D004103 ORTHO05D005242 6.6e-18 95.9 134 42.5
CBR_g46413 Chara braunii HOM05D004103 ORTHO05D005242 4.9e-13 79.7 86 47.7
HPP92_018246 Vanilla planifolia HOM05D004103 ORTHO05D432150 4.9e-13 79.7 62 71.0
CBR_g41560 Chara braunii HOM05D000019 ORTHO05D000002 8.3e-13 79.0 62 61.3
Mapoly0037s0047 Marchantia polymorpha HOM05D004103 ORTHO05D005242 1.6e-11 74.7 79 44.3
Atru.chr5.3346 Acer truncatum HOM05D004103 ORTHO05D005242 1.3e-10 71.6 92 42.4
CBR_g70742 Chara braunii HOM05D004103 ORTHO05D005242 2.3e-10 70.9 108 38.9
Pp3c3_24240 Physcomitrium patens HOM05D004103 ORTHO05D005242 3.0e-10 70.5 82 43.9
Oeu037219.1 Olea europaea HOM05D004103 ORTHO05D005242 5.1e-10 69.7 88 39.8
AagrBONN_evm.TU.Sc2ySwM_362.1427 Anthoceros agrestis HOM05D004103 ORTHO05D005242 1.9e-09 67.8 66 51.5
CARHR269070 Cardamine hirsuta HOM05D004103 ORTHO05D005242 1.6e-08 64.7 81 45.7
Cpa.g.sc12.139 Carica papaya HOM05D004103 ORTHO05D005242 8.1e-08 62.4 87 43.7
AagrBONN_evm.TU.Sc2ySwM_228.570 Anthoceros agrestis HOM05D004103 ORTHO05D005242 4.0e-07 60.1 174 27.6
Zm00001eb425080 Zea mays HOM05D004103 ORTHO05D005242 1.2e-06 58.5 102 36.3
FAN16G2423 Fragaria x ananassa HOM05D004103 ORTHO05D005242 9.9e-06 55.5 125 33.6
FAN16G2922 Fragaria x ananassa HOM05D004103 ORTHO05D005242 9.9e-06 55.5 125 33.6


User provided reference genes

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