Gene: PGSC0003DMG400022278

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400022278
  • Transcript Identifier PGSC0003DMT400057382
  • Gene Type Coding gene
  • Location ST4.03ch07 : 55518228-55527066 : positive

Gene Family Information

  • ID HOM05D004103
  • #Genes/#Species 172/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37431412
  • id PGSC0003DMG400022278.v4.03
  • uniprot M1C0X8

Descriptions

  • Description Histone deacetylase
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070932
IBA
GOA Databasehistone H3 deacetylation
GO:0000122
IBA
GOA Databasenegative regulation of transcription by RNA polymerase II
GO:0043970
IEA
GOA Databasehistone H3-K9 acetylation
GO:0009873
IEA
GOA Databaseethylene-activated signaling pathway

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070403
IEA
GOA DatabaseNAD+ binding
GO:0070403
IEA
InterProNAD+ binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0003714
IBA
GOA Databasetranscription corepressor activity
GO:0004407
IBA
GOA Databasehistone deacetylase activity
GO:0019213
IBA
GOA Databasedeacetylase activity
GO:0031490
IEA
GOA Databasechromatin DNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G55760

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003000 Sirtuin family
IPR029035 DHS-like NAD/FAD-binding domain superfamily
Mapman id Description
12.3.2.3 Chromatin organisation.post-translational histone modification.histone deacetylation.SIRTUIN histone deacetylase