Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018143 Vanilla planifolia HOM05D002112 ORTHO05D005830 3.2e-190 668.3 345 100.0
GSVIVG01010853001 Vitis vinifera HOM05D002112 ORTHO05D005830 3.1e-113 412.5 351 59.5
Nn2g10363 Nelumbo nucifera HOM05D002112 ORTHO05D005830 4.5e-112 408.7 350 62.0
Atru.chr4.1269 Acer truncatum HOM05D002112 ORTHO05D005830 4.2e-110 402.1 351 57.5
MBI14_g20102_MAGBIO Magnolia biondii HOM05D002112 ORTHO05D005830 1.2e-109 400.6 377 56.0
Haze_01451 Corylus avellana HOM05D002112 ORTHO05D005830 1.4e-108 397.1 375 55.2
Ciclev10020598m.g Citrus clementina HOM05D002112 ORTHO05D005830 3.0e-108 396.0 361 56.2
Ca_04336_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 3.9e-108 395.6 374 55.6
TAR369G0031 Trochodendron aralioides HOM05D002112 ORTHO05D005830 1.5e-107 393.7 383 53.5
Manes.04G047300 Manihot esculenta HOM05D002112 ORTHO05D005830 2.6e-107 392.9 351 58.4
CiPaw.01G095700 Carya illinoinensis HOM05D002112 ORTHO05D005830 3.3e-107 392.5 374 54.3
Sc19g0002800 Simmondsia chinensis HOM05D002112 ORTHO05D005830 4.4e-107 392.1 382 54.5
Dinv17874 Davidia involucrata HOM05D002112 ORTHO05D005830 9.7e-107 391.0 352 57.4
Lj2A342T117 Lonicera japonica HOM05D002112 ORTHO05D005830 2.8e-106 389.4 351 57.8
Sabra17G0015800 Salix brachista HOM05D002112 ORTHO05D005830 3.7e-106 389.0 352 58.2
ATR0559G336 Amborella trichopoda HOM05D002112 ORTHO05D005830 1.8e-105 386.7 344 58.7
Peaxi162Scf00036g02120 Petunia axillaris HOM05D002112 ORTHO05D005830 1.8e-105 386.7 357 56.3
Lj6g0007258 Lotus japonicus HOM05D002112 ORTHO05D005830 3.1e-105 386.0 351 55.8
Sabra17G0000800 Salix brachista HOM05D002112 ORTHO05D005830 3.1e-105 386.0 352 57.7
Actinidia22156 Actinidia chinensis HOM05D002112 ORTHO05D005830 5.3e-105 385.2 375 54.4
AUR62031652 Chenopodium quinoa HOM05D002112 ORTHO05D005830 5.3e-105 385.2 373 55.2
Solyc02g082030.3 Solanum lycopersicum HOM05D002112 ORTHO05D005830 1.2e-104 384.0 359 56.3
Sopen02g026670 Solanum pennellii HOM05D002112 ORTHO05D005830 1.2e-104 384.0 359 56.3
QL10p051275 Quercus lobata HOM05D002112 ORTHO05D005830 1.6e-104 383.6 372 54.3
DCAR_007772 Daucus carota HOM05D002112 ORTHO05D005830 2.0e-104 383.3 345 56.2
CANSAT78G1637 Cannabis sativa HOM05D002112 ORTHO05D005830 3.5e-104 382.5 346 57.5
Glyma.13G074600 Glycine max HOM05D002112 ORTHO05D005830 3.5e-104 382.5 352 54.8
Lalb_Chr17g0347631 Lupinus albus HOM05D002112 ORTHO05D005830 4.5e-104 382.1 341 56.0
RcHm_v2.0_Chr2g0118821 Rosa chinensis HOM05D002112 ORTHO05D005830 5.9e-104 381.7 344 56.7
PGSC0003DMG400007324 Solanum tuberosum HOM05D002112 ORTHO05D005830 5.9e-104 381.7 359 55.7
CAN.G809.29 Capsicum annuum HOM05D002112 ORTHO05D005830 1.0e-103 380.9 323 58.8
arahy.Tifrunner.gnm1.ann1.PNXW1P Arachis hypogaea HOM05D002112 ORTHO05D005830 2.9e-103 379.4 323 57.6
Nitab4.5_0000632g0010 Nicotiana tabacum HOM05D002112 ORTHO05D005830 2.9e-103 379.4 344 57.0
HanXRQChr02g0033051 Helianthus annuus HOM05D002112 ORTHO05D005830 5.0e-103 378.6 346 54.9
arahy.Tifrunner.gnm1.ann1.9N9T88 Arachis hypogaea HOM05D002112 ORTHO05D005830 6.5e-103 378.3 323 57.6
Thhalv10020922m.g Eutrema salsugineum HOM05D002112 ORTHO05D005830 6.5e-103 378.3 333 58.0
Potri.017G026100 Populus trichocarpa HOM05D002112 ORTHO05D005830 6.5e-103 378.3 351 57.0
Prupe.1G198700 Prunus persica HOM05D002112 ORTHO05D005830 6.5e-103 378.3 351 55.3
VMungo0540G0891 Vigna mungo HOM05D002112 ORTHO05D005830 1.1e-102 377.5 351 54.7
Medtr3g040090 Medicago truncatula HOM05D002112 ORTHO05D005830 1.9e-102 376.7 373 52.8
ECA246G0582 Erigeron canadensis HOM05D002112 ORTHO05D005830 2.5e-102 376.3 326 57.4
Glyma.20G048400 Glycine max HOM05D002112 ORTHO05D005830 2.5e-102 376.3 352 54.5
Aqoxy7G04120 Aquilegia oxysepala HOM05D002112 ORTHO05D005830 3.2e-102 375.9 314 60.2
TPR.G11324 Trifolium pratense HOM05D002112 ORTHO05D005830 7.2e-102 374.8 382 51.8
vmacro13897 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 7.2e-102 374.8 350 57.1
Duzib151G0469 Durio zibethinus HOM05D002112 ORTHO05D005830 1.2e-101 374.0 347 55.9
TWI38G0996 Tripterygium wilfordii HOM05D002112 ORTHO05D005830 1.6e-101 373.6 374 52.7
Migut.M02025 Erythranthe guttata HOM05D002112 ORTHO05D005830 2.1e-101 373.2 368 54.1
Sp3g18350 Schrenkiella parvula HOM05D002112 ORTHO05D005830 2.7e-101 372.9 343 56.6
CARHR095970 Cardamine hirsuta HOM05D002112 ORTHO05D005830 3.6e-101 372.5 345 56.2
HanXRQChr12g0380031 Helianthus annuus HOM05D002112 ORTHO05D005830 3.6e-101 372.5 385 51.9
QL11p031638 Quercus lobata HOM05D002112 ORTHO05D005830 4.7e-101 372.1 368 51.9
Gohir.D10G126900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 6.1e-101 371.7 351 56.1
MD04G1045800 Malus domestica HOM05D002112 ORTHO05D005830 6.1e-101 371.7 351 54.7
Duzib212G0454 Durio zibethinus HOM05D002112 ORTHO05D005830 8.0e-101 371.3 338 58.3
Gohir.A10G139900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 8.0e-101 371.3 351 55.8
PSO339G3553 Papaver somniferum HOM05D002112 ORTHO05D005830 8.0e-101 371.3 392 51.0
unitig_748.g7486 Utricularia gibba HOM05D002112 ORTHO05D005830 8.0e-101 371.3 335 57.0
Carub.0003s2027 Capsella rubella HOM05D002112 ORTHO05D005830 1.4e-100 370.5 343 56.3
Lalb_Chr04g0249531 Lupinus albus HOM05D002112 ORTHO05D005830 1.4e-100 370.5 341 55.1
FAN23G2661 Fragaria x ananassa HOM05D002112 ORTHO05D005830 1.8e-100 370.2 344 56.7
FAN26G0200 Fragaria x ananassa HOM05D002112 ORTHO05D005830 1.8e-100 370.2 344 56.7
Zm00001eb362140 Zea mays HOM05D002112 ORTHO05D005830 1.8e-100 370.2 332 58.7
Thecc.04G174100 Theobroma cacao HOM05D002112 ORTHO05D005830 3.0e-100 369.4 375 53.3
FvH4_1g23450 Fragaria vesca HOM05D002112 ORTHO05D005830 6.7e-100 368.2 350 55.7
FAN19G2557 Fragaria x ananassa HOM05D002112 ORTHO05D005830 6.7e-100 368.2 350 55.7
Gorai.011G139800 Gossypium raimondii HOM05D002112 ORTHO05D005830 6.7e-100 368.2 351 55.8
Os01g0974000 Oryza sativa ssp. japonica HOM05D002112 ORTHO05D005830 1.2e-99 367.5 321 59.2
Phvul.006G021000 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 1.2e-99 367.5 344 54.7
THA.LOC104817851 Tarenaya hassleriana HOM05D002112 ORTHO05D005830 2.0e-99 366.7 352 53.7
A05p28600 Brassica napus HOM05D002112 ORTHO05D005377 3.3e-99 365.9 331 56.2
BraA05t21737Z Brassica rapa HOM05D002112 ORTHO05D005377 3.3e-99 365.9 331 56.2
Potri.007G131700 Populus trichocarpa HOM05D002112 ORTHO05D005830 7.5e-99 364.8 376 54.8
Rhsim07G0082300 Rhododendron simsii HOM05D002112 ORTHO05D005830 1.7e-98 363.6 350 56.6
AL3G34040 Arabidopsis lyrata HOM05D002112 ORTHO05D005830 2.2e-98 363.2 333 55.9
C05p44010 Brassica napus HOM05D002112 ORTHO05D005377 2.8e-98 362.8 390 50.3
BolC5t33124H Brassica oleracea HOM05D002112 ORTHO05D005830 2.8e-98 362.8 375 52.0
Psat2g021160 Pisum sativum HOM05D002112 ORTHO05D005830 2.8e-98 362.8 383 50.9
COL.COLO4_08219 Corchorus olitorius HOM05D002112 ORTHO05D005830 4.8e-98 362.1 376 54.3
Sabra07G0106900 Salix brachista HOM05D002112 ORTHO05D005830 6.3e-98 361.7 376 53.7
Sabra07G0118800 Salix brachista HOM05D002112 ORTHO05D005830 6.3e-98 361.7 376 53.7
BcaC05g28317 Brassica carinata HOM05D002112 ORTHO05D005377 8.2e-98 361.3 390 50.5
Aa31LG8G7130 Aethionema arabicum HOM05D002112 ORTHO05D005830 1.1e-97 360.9 350 53.4
Ca_06168_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 1.4e-97 360.5 379 50.9
Ca_06185_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 1.4e-97 360.5 379 50.9
Cc09_g04780 Coffea canephora HOM05D002112 ORTHO05D005830 2.4e-97 359.8 356 53.7
MELO3C015704.2 Cucumis melo HOM05D002112 ORTHO05D005830 4.1e-97 359.0 374 52.9
Medtr5g088340 Medicago truncatula HOM05D002112 ORTHO05D005830 5.3e-97 358.6 383 50.1
Actinidia04201 Actinidia chinensis HOM05D002112 ORTHO05D005830 9.1e-97 357.8 407 49.4
BcaB04g20660 Brassica carinata HOM05D002112 ORTHO05D005830 9.1e-97 357.8 343 53.6
BolC1t04335H Brassica oleracea HOM05D002112 ORTHO05D005377 1.2e-96 357.5 370 53.0
Eucgr.I00215 Eucalyptus grandis HOM05D002112 ORTHO05D005830 5.0e-95 352.1 357 52.4
Phvul.008G205800 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 5.0e-95 352.1 335 54.3
BcaC09g48987 Brassica carinata HOM05D002112 ORTHO05D005377 6.5e-95 351.7 366 52.5
C01p43770 Brassica napus HOM05D002112 ORTHO05D005830 1.9e-94 350.1 367 52.6
VMungo0647G1998 Vigna mungo HOM05D002112 ORTHO05D005830 4.2e-94 349.0 373 49.6
CiPaw.06G167000 Carya illinoinensis HOM05D002112 ORTHO05D005830 9.4e-94 347.8 374 51.1
Nitab4.5_0003902g0080 Nicotiana tabacum HOM05D002112 ORTHO05D005830 9.4e-94 347.8 323 55.1
Glyma.14G040300 Glycine max HOM05D002112 ORTHO05D005830 6.1e-93 345.1 357 50.7
CDE08G1601 Ceratophyllum demersum HOM05D002112 ORTHO05D005830 4.0e-92 342.4 383 52.0
SalBow5G0693 Salvia bowleyana HOM05D002112 ORTHO05D005830 1.2e-91 340.9 347 52.7
Peaxi162Scf00276g01115 Petunia axillaris HOM05D002112 ORTHO05D005830 3.4e-91 339.3 384 49.5
EL10Ac2g03438 Beta vulgaris HOM05D002112 ORTHO05D005830 4.8e-90 335.5 377 49.1
Haze_10243 Corylus avellana HOM05D002112 ORTHO05D005830 1.4e-89 334.0 345 53.6
SGA_v2.0_scaffold16G07839 Striga asiatica HOM05D002112 ORTHO05D005830 1.8e-89 333.6 451 43.5
Dinv21066 Davidia involucrata HOM05D002112 ORTHO05D005830 4.1e-89 332.4 354 50.3
SEGI_07155 Sequoiadendron giganteum HOM05D002112 ORTHO05D005830 5.9e-88 328.6 314 54.5
DCAR_003742 Daucus carota HOM05D002112 ORTHO05D005830 4.2e-86 322.4 336 51.5
ClCG09G018870 Citrullus lanatus HOM05D002112 ORTHO05D005830 1.8e-84 317.0 423 44.9
Hma1.2p1_2907F.1_g330140 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 6.8e-84 315.1 291 56.4
Pp3c3_12480 Physcomitrium patens HOM05D002112 ORTHO05D005830 2.6e-83 313.2 338 47.9
Ah.14g085620 Amaranthus hybridus HOM05D002112 ORTHO05D005830 6.3e-82 308.5 354 48.6
Pp3c12_4060 Physcomitrium patens HOM05D002112 ORTHO05D005830 8.3e-82 308.1 336 48.2
BraA01t03533Z Brassica rapa HOM05D002112 ORTHO05D005830 2.4e-81 306.6 370 48.4
Mapoly0038s0049 Marchantia polymorpha HOM05D002112 ORTHO05D005830 3.1e-81 306.2 321 50.5
CBR_g24153 Chara braunii HOM05D002112 ORTHO05D005830 1.3e-79 300.8 309 51.1
Lsat_1_v5_gn_3_102740 Lactuca sativa HOM05D002112 ORTHO05D005830 5.0e-79 298.9 339 48.7
SMO356G0377 Selaginella moellendorffii HOM05D002112 ORTHO05D005830 9.5e-78 294.7 306 51.0
TAR623G0168 Trochodendron aralioides HOM05D002112 ORTHO05D005830 4.7e-77 292.4 235 60.9
CsaV3_7G002030 Cucumis sativus L. HOM05D002112 ORTHO05D005830 1.4e-76 290.8 209 67.9
Gohir.A02G114100 Gossypium hirsutum HOM05D002112 ORTHO05D005830 4.0e-76 289.3 290 53.4
vmacro12410 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 4.0e-76 289.3 272 57.0
BcaB06g26098 Brassica carinata HOM05D002112 ORTHO05D005377 2.9e-74 283.1 274 52.9
AagrBONN_evm.TU.Sc2ySwM_362.2463 Anthoceros agrestis HOM05D002112 ORTHO05D005830 1.8e-73 280.4 337 47.2
Sed0017575 Sechium edule HOM05D002112 ORTHO05D005830 2.4e-73 280.0 198 68.2
Gohir.A08G075500 Gossypium hirsutum HOM05D002112 ORTHO05D005830 3.2e-73 279.6 257 57.6
Lj1A1151T82 Lonicera japonica HOM05D002112 ORTHO05D005830 3.2e-73 279.6 283 53.7
PSO151G0006 Papaver somniferum HOM05D002112 ORTHO05D005830 3.5e-72 276.2 325 46.8
ClCG02G003310 Citrullus lanatus HOM05D002112 ORTHO05D005830 7.8e-72 275.0 263 55.1
Zm00001eb139760 Zea mays HOM05D002112 ORTHO05D005830 2.8e-69 266.5 263 55.1
MSTRG.24953 Avicennia marina HOM05D002112 ORTHO05D005830 3.6e-69 266.2 216 63.9
Oeu010462.1 Olea europaea HOM05D002112 ORTHO05D005830 4.7e-69 265.8 202 64.4
Cfa004646 Carpinus fangiana HOM05D002112 ORTHO05D005830 6.2e-69 265.4 314 49.0
AT3G20320 Arabidopsis thaliana HOM05D002112 ORTHO05D005830 3.4e-67 259.6 198 64.6
QL02p069440 Quercus lobata HOM05D002112 ORTHO05D005830 3.4e-67 259.6 221 57.0
Psat5g187680 Pisum sativum HOM05D002112 ORTHO05D005830 9.8e-67 258.1 249 55.0
A01p34360 Brassica napus HOM05D002112 ORTHO05D005830 3.7e-66 256.1 271 52.8
SHI29120 Sapria himalayana HOM05D002112 ORTHO05D005830 1.9e-65 253.8 339 45.1
MD13G1257900 Malus domestica HOM05D002112 ORTHO05D005830 2.0e-64 250.4 268 51.9
MCO07G431 Micromonas commoda HOM05D002112 ORTHO05D005830 3.3e-62 243.0 314 40.1
Peaxi162Scf00580g00069 Petunia axillaris HOM05D002112 ORTHO05D005830 8.9e-60 235.0 207 58.9
Hund03181 Selenicereus undatus HOM05D002112 ORTHO05D005830 1.1e-57 228.0 277 46.6
Cre16.g694400 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D005830 4.3e-54 216.1 298 41.3
PRCOL_00002736 Prasinoderma coloniale HOM05D002112 ORTHO05D005830 1.9e-49 200.7 302 38.7
Sc07g0004100 Simmondsia chinensis HOM05D002112 ORTHO05D005830 2.0e-43 180.6 173 55.5
Glyma.02G275800 Glycine max HOM05D002112 ORTHO05D005830 1.4e-41 174.5 166 54.8
TAR623G1172 Trochodendron aralioides HOM05D002112 ORTHO05D005830 2.1e-29 134.0 108 61.1
Oeu010464.1 Olea europaea HOM05D002112 ORTHO05D005830 2.9e-26 123.6 119 52.1
Lj1A1151T83 Lonicera japonica HOM05D002112 ORTHO05D005830 3.8e-26 123.2 97 61.9
AUR62038882 Chenopodium quinoa HOM05D002112 ORTHO05D005830 1.9e-25 120.9 97 60.8
FAN28G2322 Fragaria x ananassa HOM05D002112 ORTHO05D005830 9.3e-25 118.6 103 54.4
Oeu037772.1 Olea europaea HOM05D002112 ORTHO05D005830 1.2e-24 118.2 103 54.4
Cpa.g.c39485 Carica papaya HOM05D002112 ORTHO05D005830 1.9e-17 94.4 127 40.2
MD13G1258100 Malus domestica HOM05D002112 ORTHO05D005830 7.9e-16 89.0 77 55.8
Peaxi162Scf00036g02121 Petunia axillaris HOM05D002112 ORTHO05D005830 1.3e-13 81.6 61 65.6
A01p34370 Brassica napus HOM05D000233 ORTHO05D000020 1.6e-13 81.3 59 67.8
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 2.9e-10 70.5 51 64.7
Cre09.g395028 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D143200 1.2e-08 65.1 105 37.1


User provided reference genes

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